Geve001097.1
Basic Information
- Insect
- Graphium evemon
- Gene Symbol
- PPM1L
- Assembly
- GCA_025774375.1
- Location
- JAOPJC010000001.1:844640-852171[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.032 5.6 7.2 0.5 2 23 395 416 394 416 0.96 2 13 4.9 8.7e+02 0.3 0.2 1 8 446 453 446 464 0.89 3 13 0.0026 0.46 10.6 0.7 3 23 502 522 500 522 0.96 4 13 0.027 4.8 7.5 0.4 1 23 530 552 530 552 0.95 5 13 0.016 2.8 8.2 3.6 1 23 584 606 584 606 0.95 6 13 1.2e-05 0.0021 18.0 4.2 1 23 614 636 614 636 0.99 7 13 0.017 3 8.1 4.3 1 23 719 741 719 741 0.99 8 13 7 1.2e+03 -0.1 1.6 1 17 797 813 797 819 0.87 9 13 0.035 6.2 7.1 0.1 1 23 825 847 825 847 0.95 10 13 0.0043 0.76 10.0 0.4 1 23 914 936 914 936 0.93 11 13 0.00064 0.11 12.6 0.4 1 23 942 964 942 964 0.96 12 13 0.0011 0.2 11.8 2.6 1 23 1053 1075 1053 1075 0.97 13 13 2.8e-05 0.005 16.8 1.4 1 23 1081 1103 1081 1103 0.99
Sequence Information
- Coding Sequence
- ATGGAAGACGAATTGGAGGATAAAGTCTTACACCAAACATATATGTCATTCATGAAAATTTTGTCTCGTTTCACTAATAGTGTAGCGTTTGATACTCCCGCGAGCTATTTATGGAAAATGGTGCGTCTGTATTTACTACGATCAGAGGTTCTCGTGTTCACTTTGGGTATTATTATATTTTTCATGTATCTGCAAACAATTGAATTATGGAGTCGAACATTACTCAGCAGATTGTCCCAAGCTATGAGCCCCCTTAGTGCTGTACAGCGCATGAAACTTATGGAAGGATCAGATTCGGATAAACAAAGCTGGGAATTGAAAGGTTCGCTAAGTGCAGCTTATGCAATCAAAGGACGTAGAATGCACATGGAAGACAAATTTATTATTAACGAAAACATAAATAATACAGGTATTTCACTTTTTGCCATATTTGACGGCCATGGTGGTGAATTTGCTGCAAATTATGCAAAGGATCATCTTATACAAAACCTGTATAATAAAGTAGTGGAATTGAATGCTTTCAAGGATGGAAAAGTAATTAATCCATCACCTCGAGACAGTCCAGACACACCAAAGAAAGATCAGGAAAGTTCCATTAGTGTTGAAAGAAAAACCAGTTTTAAAAAATCCATAAGTGCTGCGGATGATACATCTAAAAAAGAAATAACAGATCCTGAATTATTGGCCCAACTGTCAAAAGCTAGACCTATCACAAGGGAAGTAAGAACAACTGCCAAGCCTATTAAAAATTTTAATATACCTTTGTCAAGTTACTTAGACAAAGGAAAAATAAATTTTGGTAAACTGTTGACCGATGAAGTCCTTGCTGCTGACAGGCTACTAGTTGAAGCAGCCAAGAGGACATTAAATGTTGCTGGCACTACTGCATTGATAGCTGTATTAGAAGCAAATCATCTTATAGTTGCTAATGTAGGCGATTCTAGAGGTGTAATGTGTGACTCCCGTGGAAATGCTATACCTGTGTCATTTGATCATAAACCTCAACAAGTAAgtatatgcatatacaataaaatcccacgaaatattctagatctaccatatgataaatttaaaacACCGATGGATTTACAACCTCTTAACCTGCAAACCCAACAAAGTGAATACAAATATAACATAGACAATAGAAATCAAGACCATAAAAAACCTAAAAAGACATTATGGAAATGTAAAAAATGTAATTACAGGGATTCATCGAAAGAAGCATTACTCGAGCATGTACGGGAACATTCAAAGCCTAACCATATGGAAGAAACAAAACATCATAATGCTGGACCTAAAAAGCCAGAAAACGCACCAGATCCGGCAGACTTGGCGTACCGTTGCGGACATTGTAATCAATTATCAAATTGGAAACATGTAATTCAGAGACATTGCAGACTGAAACATGACGGCGTGATAAAAGTCATAACCACCGTGAAACCCAAATTAGGAGATCCTCCGGCTGCTGGAGCCAACCCGGCTGTCGAAATCACGGTCGATAATTGCACGAAGTGCCCATTTAGATCTAACGACAGAACTTCGCTTATTATACACATGCAACAACACCAGCCGTCGCCTCAATCTATATTTAAATGCTATTTCTGTCCTTATTTCGTCAAAGATGAGCAAGAGCTGGTGCAACATCTCGTTCTTCACGGCATTACGGACCCCGAAGATTATATTGCTAAGGCGATGGGCTGCAAATCTCCACTTCCAGATCAACAAGGGGGGCACACCTCAACAAAAAGGCACAAATGCACTGAGTGTCCTTATGAAACTAATAGTAAATCCCAGTTCATGTACCACGAACAATTTCATCGGCTACCCGCAGACACCCCATACAAATGCCCTGAATGTAACTACAGCGTATCTAAACGACATCTCCTTCATCAACATATGAGAGTTCACGGTATTACATCTAAAAAAATTGAATTAGATACCGATTTAGATGTAATCGCATCAAATTCATACTTGAATGAAAATAAACCAGATAGCAATCACCAAGAAATTCCTTATGTATGGGTATCGGCCAGGAATGAATTCCACAAAATGTATAAATGTCGCTACTGCTCATATGTTAATACTCAAAAATGCAAAATTCCGAATCACGAGAAAATCCATTGCATTATATTTGGTAATAATAAAATTTTAATTTATAAATGTTTAGATTGTAAGTTCACGTGTGATAGCTCTATGAAATTATCAGAACATTCGAGAACTCACGGCGAAGTTTACGGCCGTATTTATTTCCCTGTTGAGACTGACATTCCAGATGAGGAGCAGATAGCGAAGTTAAGAAGAGTAATAGAAAAGGAAAAACTAAATAGTGCAGATGATTTATATAGAGACGACGGAGTAATGGGTGAAAACAAAGTAATTAAAACTTTATACTTCTGCCAACAATGCCCAGCCAGATATTTTACAGAAACTGAACTAAAATTCCATGACAAATATCACAATGTAGCATTCGATTTCAAATGCCCTTATTGCGAATTTTCGGTTCTCCAAGAAAGCGAATTAGTGGCTCACTCCATTGTACACTCCGACGAATATCATACTAAAACGAAAATGCTTAAATTCATTCATAATATAGGCCCAGCACACAGTGAACCACGATTGGAGGTTTTACACAGTGAAGAATCTTTGGAAGCAACCTGGATTGTGCAAAATCCTGGTAAAAATTTTAATATTACAGATGTCTCCATCAAGAAAGCTCACGATGGAAAAAATATGCCAAAGTATTTATGTAGAGAGTGTCCTGCAAAGTTTTTCAAGAGCTCCGGTCTAAACTATCACATGGGGTTGCATAACGGTGATGGTGAATACAAATGCAAGAAATGTACTTACGCCGTTAAAAATATCGGAAATTTAGCAAAGCACGAATTGTTACATGAGAGCGAAGGTAAAGTTTCATGTGATTATGAATCTGGGGAGGATATGGATTACAAAAATATTCCACTATCGGGAACAGATCTATTTCAAAGAAAGACTGAAGCTCAGAAAAGGGTGATGAATGATAAAGATAAATTAGTTAAACCTAACGATCATTTTCCGCCAGTTCTTCAAGCGGATCCTCAGTTTGGATACCTCATGCATGGTAATCCGGAATTCATTTATCCAACTTATTTAAAAAATGGACGACAAAAAGAGAAACGTTACAAATGCCACAAATGTCCATCAGCTTTTGAAAAAAGGGAGCAATATAAAATTCACTTATCTTTACATGGTTCTAAACAAAGGTATAAATGTGAACTCTGTGACTACTCAGTTAAATATTATGCAAATTATGTTCAACATATGAGAAAGCACCAGAAAAATGATGAGGCTCAAGCCGAAAGAAGGAAAGGATCTAGTGGTTTTGCTGATTCAGAACCTGCAGAAGATAAACAAGACGATGGTACAGATAACATTAAATTGGCTATTAAAACCATGCCTAAGGGAATACCTAAAAGTGACTTCCAGCAGTTTTCTATTAGCGATCAGCAAACCCTCAGATTATTGCAACGCAGGTGTTCTTTGAATAATTCAACAAATGACGGTAATCAAGGTGATGCTACACCAATAAAAGATAGAAAACTGCATCCCTGCTATCTGTGCCCATATGCAAACCAGAGACAGGATGCTCTGAAACATTTAAAAACGCATTTTAATTACAATAAAACTCTAACACCAGAGTGCTATGTGGCTAATGAAGATGTAAGTTTTTCTATTACAAAATTAGACGAGGAAAATAACACCACTGATCTCAAATTTGATGTGCAAACAAAAATAGAAATGTGCAATGAAGACAAGATATTTGTTAAAATAAAAACAGGAGAATTATTGGTTGAa
- Protein Sequence
- MEDELEDKVLHQTYMSFMKILSRFTNSVAFDTPASYLWKMVRLYLLRSEVLVFTLGIIIFFMYLQTIELWSRTLLSRLSQAMSPLSAVQRMKLMEGSDSDKQSWELKGSLSAAYAIKGRRMHMEDKFIINENINNTGISLFAIFDGHGGEFAANYAKDHLIQNLYNKVVELNAFKDGKVINPSPRDSPDTPKKDQESSISVERKTSFKKSISAADDTSKKEITDPELLAQLSKARPITREVRTTAKPIKNFNIPLSSYLDKGKINFGKLLTDEVLAADRLLVEAAKRTLNVAGTTALIAVLEANHLIVANVGDSRGVMCDSRGNAIPVSFDHKPQQVSICIYNKIPRNILDLPYDKFKTPMDLQPLNLQTQQSEYKYNIDNRNQDHKKPKKTLWKCKKCNYRDSSKEALLEHVREHSKPNHMEETKHHNAGPKKPENAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKLGDPPAAGANPAVEITVDNCTKCPFRSNDRTSLIIHMQQHQPSPQSIFKCYFCPYFVKDEQELVQHLVLHGITDPEDYIAKAMGCKSPLPDQQGGHTSTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHMRVHGITSKKIELDTDLDVIASNSYLNENKPDSNHQEIPYVWVSARNEFHKMYKCRYCSYVNTQKCKIPNHEKIHCIIFGNNKILIYKCLDCKFTCDSSMKLSEHSRTHGEVYGRIYFPVETDIPDEEQIAKLRRVIEKEKLNSADDLYRDDGVMGENKVIKTLYFCQQCPARYFTETELKFHDKYHNVAFDFKCPYCEFSVLQESELVAHSIVHSDEYHTKTKMLKFIHNIGPAHSEPRLEVLHSEESLEATWIVQNPGKNFNITDVSIKKAHDGKNMPKYLCRECPAKFFKSSGLNYHMGLHNGDGEYKCKKCTYAVKNIGNLAKHELLHESEGKVSCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVMNDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQKNDEAQAERRKGSSGFADSEPAEDKQDDGTDNIKLAIKTMPKGIPKSDFQQFSISDQQTLRLLQRRCSLNNSTNDGNQGDATPIKDRKLHPCYLCPYANQRQDALKHLKTHFNYNKTLTPECYVANEDVSFSITKLDEENNTTDLKFDVQTKIEMCNEDKIFVKIKTGELLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -