Basic Information

Transcription Factor Domain

TF Family: SAND
Domain: SAND domain
PFAM: PF01342
TF Group: Other Alpha-Helix Group
Description: The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0014 19 4.6 0.0 28 48 34 54 20 60 0.79

2 6 0.0018 24 4.3 0.0 30 50 55 75 51 82 0.79

3 6 0.0015 20 4.5 0.2 29 49 92 112 79 120 0.76

4 6 0.0086 1.2e+02 2.1 0.0 30 45 112 127 110 132 0.84

5 6 0.0026 35 3.8 0.0 29 55 130 156 119 163 0.79

6 6 0.21 2.8e+03 -2.4 0.0 29 46 206 223 189 226 0.66

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0014	19	4.6	0.0	28	48	34	54	20	60	0.79
2	6	0.0018	24	4.3	0.0	30	50	55	75	51	82	0.79
3	6	0.0015	20	4.5	0.2	29	49	92	112	79	120	0.76
4	6	0.0086	1.2e+02	2.1	0.0	30	45	112	127	110	132	0.84
5	6	0.0026	35	3.8	0.0	29	55	130	156	119	163	0.79
6	6	0.21	2.8e+03	-2.4	0.0	29	46	206	223	189	226	0.66

Coding Sequence: ATGAGATTAGAGCAATTCATGACATCGTATCTTAGGACTTTTAAGAATTTAGCTATACGCAATACCACCTATAGGGTTACTTTAGCTCAATTCTCCTTGTTTGCTAGAGCTGTACGCAATACCACCCATTGGGTTACTTTAGTTCAATTCTCCTTGTTTGCTAGAGCTGTACGCAATACCACCCATTGGGTTACTTTAGCTCAATTCTCTTTGTTTGCTAGAGCTGTACGCAAAACCACCCATTGGGTTACTATAGCTCAATTCTCCTTGTTTGCTAGAGCTGTACGCAATACCACCCATTGGGTTACTATAGCTCAATTCTCCTTGTTTGCTAGAGCTGTACGCAATACCACCCATTGGGTTACTTTAGTTCAATTCCCCTTGTTTGCTAGAGCTGTACGCAATACCAACTATTGGGTTACTATAGCTCAATTCTCCTTGTTTGCTAGAGCTATACGCAATACTAACTACTCGGTTACTATAGCTCTATTCTCTTTGTTTGCTAGAGCTATACGCAATAGTAACTACTCGGTTACTATAGCTCCATTCTCCTTGTTTGCTAGAGCTGTACGCAATACTTACAACTCGGTTACCTTAGCTCAATTCTCCTTGTTGGCTAGAGCTATACGCAATACTACTTACTCGGTTACTTTAGCTCAATTCTCCATGTTTGCTAGAGCTGTAC
Protein Sequence: MRLEQFMTSYLRTFKNLAIRNTTYRVTLAQFSLFARAVRNTTHWVTLVQFSLFARAVRNTTHWVTLAQFSLFARAVRKTTHWVTIAQFSLFARAVRNTTHWVTIAQFSLFARAVRNTTHWVTLVQFPLFARAVRNTNYWVTIAQFSLFARAIRNTNYSVTIALFSLFARAIRNSNYSVTIAPFSLFARAVRNTYNSVTLAQFSLLARAIRNTTYSVTLAQFSMFARAV

Sequence clustering based on sequence similarity using MMseqs2