Basic Information

Insect: Gortyna flavago
Gene Symbol: -
Assembly: GCA_963669345.1
Location: OY770147.1:2315132-2341547[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6e-05 0.0048 18.0 2.0 1 23 316 339 316 339 0.96

2 9 3.5 2.8e+02 3.0 6.8 2 23 347 368 346 368 0.96

3 9 0.00031 0.025 15.8 4.6 2 23 400 421 400 421 0.98

4 9 0.026 2.1 9.7 0.3 1 23 425 448 425 448 0.94

5 9 0.85 69 5.0 0.5 2 20 463 481 462 483 0.91

6 9 0.086 6.9 8.1 5.6 3 23 522 543 520 543 0.91

7 9 0.27 22 6.5 0.0 3 23 557 576 555 576 0.96

8 9 6.3e-06 0.00051 21.1 1.7 1 23 582 604 582 604 0.99

9 9 2e-05 0.0016 19.5 2.4 3 23 612 633 611 633 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6e-05	0.0048	18.0	2.0	1	23	316	339	316	339	0.96
2	9	3.5	2.8e+02	3.0	6.8	2	23	347	368	346	368	0.96
3	9	0.00031	0.025	15.8	4.6	2	23	400	421	400	421	0.98
4	9	0.026	2.1	9.7	0.3	1	23	425	448	425	448	0.94
5	9	0.85	69	5.0	0.5	2	20	463	481	462	483	0.91
6	9	0.086	6.9	8.1	5.6	3	23	522	543	520	543	0.91
7	9	0.27	22	6.5	0.0	3	23	557	576	555	576	0.96
8	9	6.3e-06	0.00051	21.1	1.7	1	23	582	604	582	604	0.99
9	9	2e-05	0.0016	19.5	2.4	3	23	612	633	611	633	0.97

Sequence Information

Coding Sequence: ATGTCGAACCTGGAAATATGTCGAATATGTCTTTCCTATGATGTGAAAATGTATGAATACGGTCAATTTCAACTGAGGAGTTTCTACGAGGAGATTATGGCCACAAAAGTAAATGAAAGATCAGGACTGCCCAAATGTTTCTGTTACCAGTGTGCAGCACTACTGCATAAGTACCACAAGTTTAAAGAAAAGTGCTACACTGGACAGAACGCTCTCAAAGAAATTATTTGGAAAGGACAACTAACCAAAGAAGCAGTCCGAAGCATAGACAAAGCAAGCAAGAACATCCGTGTACCATTAAGCATAATAACTGTAAACAAAAGAGTACGGACCTGTATCGTTAAAACTGGAGCCAAACTAAAACTTAATGAAAGAAAGCCTGAAGAAGTAGACGTAGCCTCTTTAAATGATGACGGTGACGACAATAATGAACATAGCAAAGAACGTTTAGTTGAAGAAacagacataaaaaatatagacataaaagaaaagaaagaagacGAAGACCTAGAACCTGAAAAGATTGAAAAAGATATAGATGTTGTAGATATTATTCCAAAAATAGAACCAACAGAAAATTTAACTGTAGACATAGATAAAGTCTTCTCAGACAATAATAAGCCAAGTGACAGCGAAAAGTTTATCATTGATGACATTAAAATTGTCACAGACGACGACGAAGATTCTGAACCAAAAGAACCGGTCAAAAAGAATAGAACTAGAAACGGTGGtaacagtaaaaataataaaaaagctaaGGATACCATACCGAAAGAGAAGAAATTCGCCGTTAAGACTAATGAAAAGGCCGAAATAGATCCTAATAAGGCTACTAAAAAGGCCGAAATGGATCCTAATAACTGGCTGAAGATAACTTTAACGGAAGAGGAGGCGGATGCTGAATTTAAATCAAGGGGAACACATAAGAGGTATTTGAACGCTCAGTACAAATGTACTGATTGTCTCAAAGGATTTTCGAAAGAGGATATGTTGAAGAGGCATACCAAATTAAGACATAGTGAGTCTAACGGCCCAATAGAGTGTCGCTTCTGCCACATGCGGTTCAAATGGAAGTGTTTCCTCAGCCAACACATGAGACAGCACTATACCAAGTACAAATGTCTGCGCTGCGACCTCGTCTGTCCTTTAGAATCAACAGCACTTTTCCATGAAGACTACCATAATGGTGTTACCAGAAAATGCGATCATTGTGACAAAGTGTTCAAGCATGTATCAACATATTACACTCACTTGCGCGCACATCGCAGCGAACACGTGTGTACGTTGTGCGGCGCGTCGTTCGTCAGTGTCACCGGGCTCGGCCTACATAAGAAGATCAAACATGTTAATGCTGATTCTGAGTTACCTGCACAAGGCGAAGAACAGTACTGCCAGCGATGCGACGTCAAGTTCGAGACGCGGAAGGCTTACGATGAACATCTCATACATTCAGCCAATCACGTCGACGGAATTGAaGACTTAgaaataaatgtacctataacTTCTAACCCCGGAAAACGTCGGCAGAATCTCAAGAGGCTGACCAAAGGAATACCCACCGACTGTCATGTTTGCGGCAAACACTTCGCTACGCAGGCCGCATGTCGCAAGCATCACTTGGCGGAACACCCGCGCACTTCGTTCTTCCTGGCCGAAGAGAGACAAATCTGCGAGATCTGTGGCATGTCTCTAGGTCCGGGCAGCGTCTCAAGTCACATGAACACTCACACTCGCGAGAAGATGTACACGTGCAACACTTGCGGACGACAGTTTAACAGCAAAGGAGGCATGAAGAAACATCAGCTGACCCACACCAGTGAGAAGCCGGTGGCTTGCACTCTATGCGACAAACGGTTCAAGCAATCCAGCAGCATGAAGCTACACTACCGCACCTTCCATCTCAAAGAGCCGTATCCTAAGAGCCACGAAGATTCTGACGACAACATGATACTCGACAACTTTTACGCGCGAAAGTATTGA
Protein Sequence: MSNLEICRICLSYDVKMYEYGQFQLRSFYEEIMATKVNERSGLPKCFCYQCAALLHKYHKFKEKCYTGQNALKEIIWKGQLTKEAVRSIDKASKNIRVPLSIITVNKRVRTCIVKTGAKLKLNERKPEEVDVASLNDDGDDNNEHSKERLVEETDIKNIDIKEKKEDEDLEPEKIEKDIDVVDIIPKIEPTENLTVDIDKVFSDNNKPSDSEKFIIDDIKIVTDDDEDSEPKEPVKKNRTRNGGNSKNNKKAKDTIPKEKKFAVKTNEKAEIDPNKATKKAEMDPNNWLKITLTEEEADAEFKSRGTHKRYLNAQYKCTDCLKGFSKEDMLKRHTKLRHSESNGPIECRFCHMRFKWKCFLSQHMRQHYTKYKCLRCDLVCPLESTALFHEDYHNGVTRKCDHCDKVFKHVSTYYTHLRAHRSEHVCTLCGASFVSVTGLGLHKKIKHVNADSELPAQGEEQYCQRCDVKFETRKAYDEHLIHSANHVDGIEDLEINVPITSNPGKRRQNLKRLTKGIPTDCHVCGKHFATQAACRKHHLAEHPRTSFFLAEERQICEICGMSLGPGSVSSHMNTHTREKMYTCNTCGRQFNSKGGMKKHQLTHTSEKPVACTLCDKRFKQSSSMKLHYRTFHLKEPYPKSHEDSDDNMILDNFYARKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00177608;
90% Identity: -
80% Identity: -