Gfla026912.1
Basic Information
- Insect
- Gortyna flavago
- Gene Symbol
- -
- Assembly
- GCA_963669345.1
- Location
- OY770154.1:1908458-1928224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0076 0.62 11.4 0.7 1 23 234 256 234 256 0.97 2 12 0.01 0.83 11.0 0.6 1 23 263 286 263 286 0.94 3 12 0.032 2.6 9.5 2.0 1 23 290 312 290 312 0.96 4 12 0.00066 0.053 14.8 4.4 1 23 317 340 317 340 0.98 5 12 8.5e-05 0.0069 17.5 2.5 1 23 344 367 344 367 0.97 6 12 0.038 3.1 9.2 0.1 3 20 388 405 387 406 0.95 7 12 0.0027 0.22 12.8 0.2 2 23 420 441 419 441 0.96 8 12 0.00033 0.027 15.7 2.3 1 23 460 483 460 483 0.97 9 12 7.4e-06 0.0006 20.9 1.9 2 23 493 514 492 514 0.97 10 12 7.7e-05 0.0062 17.7 2.9 1 23 520 542 520 542 0.98 11 12 2e-06 0.00016 22.7 0.3 1 23 548 570 548 570 0.98 12 12 6.1e-06 0.00049 21.2 1.5 1 23 576 599 576 599 0.97
Sequence Information
- Coding Sequence
- atggaaaaacTACCAATGTGTAGGATATGTTTAGTGGAAAATGTTCGCTTTACTGTTGTGACTAACAAGAATCTACAGGAGATATATGAGAAGCTGACTGATATAccaTTTGTAACTGAAGACAGTAGACCTATGCTCGCTTGTTTCTTTTGCTACGCCAAACTGAAGCAAAGCTACCAACTGCAGAAAAAATGTCTGGAAGCCGAGGAGCTGTTGGCACAGATATTGAATGAGGACTATGAGATAAAGCCAGTACAATTTAAAGGAGAAGTAGATTATTTTGGTGGGTTCGTCAAAACATCAATACAGCATTTAAATATAGATGATGATGTTTGCCAAACGAAAAGCGACTCTGTCAAGGAAGAAATACCGGCTGTTTGTGAGGAACAAGATGATAATTTAGATCTGAAGGTGGAGCACCAAAGTGATGATGTAGAAGATACACGAGCACAACATTCTGAATCGGATTCAGAAGATGATGTACCTTTAATGAAGTTTAAAACTGAAGTGGAAGAACATGAAGTGGAAGAACATGAAGTGGAAGAACATGAAGTGGAAGAACATGAAGTGTCTAAGAAAAAAACCGGCATTAGGAAGAAaagTCGTAAGCCAGATTGTAGCGAAATCATTTTGAGTAAGGAGGAACAGCAAGAGAACTTGCAGGCTAGGTCGAGCTCGTCCAACTACATACACTCTCCGTTCAAGTGTAGTCTGTGTTATAAAGGGTTCGTCGACGCACGAGCTTATGATAATCATAAGATCAAGCATGAGTCGCGTAGCGGCGCGCATGTCTGCGACATATGCCAAATGCGCTATCGGTCTGTGCAGCTGTTGCGCACGCACGCAAACAACGCACATGTCcgcatatttaaatgtaataaatgtgGCTATGTATCTCACACGAGTAATCAAGCAAGGATTCACGAGAAATGGCACAACGGACATACATACGAATGTCAACTATGCAGTCACACGTTCAGGAAACCGACGTCATACCTGTCTCACATGCGCAAGAGACATCCCACGGAGCATGTCTGCAACATTTGTGGAGAAACGTTCGTCGGTAAACATGGTCTTCAAATGCATAAGAGGAAAACGCATATTAACGGCGAAAAGATGGTCGATGCTAACGACGCGAATGACCCAGCTTCTAAAAGATTCTGCGCTGAATGTAACATACAGTTTTACAATTCTGAAGCATGGAAACGACACATACTGTGCTCCGTGAAACATACGCTGAAGACTGAAGAAAGTAAGAGCTGCTCTATCTGCTCGTGGAAGTATGTCGGCAACGTGTCTCTGGAGACGCACATGAATGAGCACGCTAAAGCGTTGCGGCGCTCACGGAGACCGCCCGCCACGGCTAAGGAACGCATTTTTAGATGCAATCAGTGTGGCTCCAACTTCATGACGCGGTCTAAACTGCAGACACACGTCAACAGAACTCATTTAGGACTGAAGTACAACAAGAACATCGTCTGCGAAGTGTGCGGGAAGAAATGCACGTCAAACGCGACCCTGAAATACCACCAGCGCACGCACACAGGGGAGAAACCATACTCCTGTGGAAGTTGCACAAAGCACTTTGTGGACAGCAATCAGCTTCGCATACACACTCGTACGCACACCGGTGAGAAACCTTACGTCTGTGCGGCCTGCGGGAAAAGATTCACACAGAAACCGGCGCTGAACAGACATTACAGAGTACACACCGGATTGAAGCCCTACATTTGTCAATACTGTTCCAGAACATTCAGTCAGTCGAATTCTTTGAAACTGCACGTGAAGACTGTTCACCTAAAACAGCCCGCTAACAGTGGAAAAACTAAGACGAAAagcgaaaaaactaaaatggaGAAAAATTGTGAAGCTTTAGAGATTGGCTCATCAATAGAGGGCGTTAGGGTCTACATAAAATGA
- Protein Sequence
- MEKLPMCRICLVENVRFTVVTNKNLQEIYEKLTDIPFVTEDSRPMLACFFCYAKLKQSYQLQKKCLEAEELLAQILNEDYEIKPVQFKGEVDYFGGFVKTSIQHLNIDDDVCQTKSDSVKEEIPAVCEEQDDNLDLKVEHQSDDVEDTRAQHSESDSEDDVPLMKFKTEVEEHEVEEHEVEEHEVEEHEVSKKKTGIRKKSRKPDCSEIILSKEEQQENLQARSSSSNYIHSPFKCSLCYKGFVDARAYDNHKIKHESRSGAHVCDICQMRYRSVQLLRTHANNAHVRIFKCNKCGYVSHTSNQARIHEKWHNGHTYECQLCSHTFRKPTSYLSHMRKRHPTEHVCNICGETFVGKHGLQMHKRKTHINGEKMVDANDANDPASKRFCAECNIQFYNSEAWKRHILCSVKHTLKTEESKSCSICSWKYVGNVSLETHMNEHAKALRRSRRPPATAKERIFRCNQCGSNFMTRSKLQTHVNRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYSCGSCTKHFVDSNQLRIHTRTHTGEKPYVCAACGKRFTQKPALNRHYRVHTGLKPYICQYCSRTFSQSNSLKLHVKTVHLKQPANSGKTKTKSEKTKMEKNCEALEIGSSIEGVRVYIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527600;
- 90% Identity
- iTF_00925072;
- 80% Identity
- -