Basic Information

Insect: Gortyna flavago
Gene Symbol: -
Assembly: GCA_963669345.1
Location: OY770134.1:13680462-13696018[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.4e-05 0.0076 17.4 2.2 1 23 431 453 431 453 0.97

2 20 0.0049 0.4 12.0 0.6 1 20 459 478 459 481 0.94

3 20 2.5e-05 0.002 19.2 5.6 1 23 500 522 500 522 0.98

4 20 0.00011 0.0092 17.2 4.1 1 23 528 550 528 550 0.99

5 20 4.3e-05 0.0035 18.5 5.3 1 23 556 578 556 578 0.97

6 20 9.9e-06 0.0008 20.5 7.4 1 23 584 606 584 606 0.97

7 20 8.4e-07 6.8e-05 23.9 2.9 1 23 612 634 612 634 0.97

8 20 0.00012 0.0096 17.1 6.7 1 23 640 662 640 662 0.97

9 20 0.00012 0.0095 17.1 6.5 1 23 668 690 668 690 0.97

10 20 5.7e-07 4.6e-05 24.4 1.9 1 23 696 718 696 718 0.98

11 20 1.1e-05 0.00091 20.3 7.7 1 23 724 746 724 746 0.98

12 20 3e-05 0.0024 19.0 6.6 1 23 752 774 752 774 0.98

13 20 2.3e-06 0.00019 22.5 4.2 1 23 780 802 780 802 0.98

14 20 7.8e-06 0.00063 20.8 5.0 1 23 808 830 808 830 0.96

15 20 2.5e-06 0.0002 22.4 5.0 1 23 836 858 836 858 0.98

16 20 3.6e-06 0.00029 21.9 6.0 1 23 864 886 864 886 0.98

17 20 6.9e-05 0.0056 17.8 7.9 1 23 892 914 892 914 0.97

18 20 7.1e-06 0.00057 21.0 5.4 1 23 920 942 920 942 0.98

19 20 0.00085 0.069 14.4 0.3 1 23 949 971 949 971 0.96

20 20 0.37 30 6.1 4.9 1 23 983 1005 983 1005 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.4e-05	0.0076	17.4	2.2	1	23	431	453	431	453	0.97
2	20	0.0049	0.4	12.0	0.6	1	20	459	478	459	481	0.94
3	20	2.5e-05	0.002	19.2	5.6	1	23	500	522	500	522	0.98
4	20	0.00011	0.0092	17.2	4.1	1	23	528	550	528	550	0.99
5	20	4.3e-05	0.0035	18.5	5.3	1	23	556	578	556	578	0.97
6	20	9.9e-06	0.0008	20.5	7.4	1	23	584	606	584	606	0.97
7	20	8.4e-07	6.8e-05	23.9	2.9	1	23	612	634	612	634	0.97
8	20	0.00012	0.0096	17.1	6.7	1	23	640	662	640	662	0.97
9	20	0.00012	0.0095	17.1	6.5	1	23	668	690	668	690	0.97
10	20	5.7e-07	4.6e-05	24.4	1.9	1	23	696	718	696	718	0.98
11	20	1.1e-05	0.00091	20.3	7.7	1	23	724	746	724	746	0.98
12	20	3e-05	0.0024	19.0	6.6	1	23	752	774	752	774	0.98
13	20	2.3e-06	0.00019	22.5	4.2	1	23	780	802	780	802	0.98
14	20	7.8e-06	0.00063	20.8	5.0	1	23	808	830	808	830	0.96
15	20	2.5e-06	0.0002	22.4	5.0	1	23	836	858	836	858	0.98
16	20	3.6e-06	0.00029	21.9	6.0	1	23	864	886	864	886	0.98
17	20	6.9e-05	0.0056	17.8	7.9	1	23	892	914	892	914	0.97
18	20	7.1e-06	0.00057	21.0	5.4	1	23	920	942	920	942	0.98
19	20	0.00085	0.069	14.4	0.3	1	23	949	971	949	971	0.96
20	20	0.37	30	6.1	4.9	1	23	983	1005	983	1005	0.99

Sequence Information

Coding Sequence: ATGAATCAGGATCACCATAATATGAATACGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGTCACAAGGCCAAAGAGTTCAGGCCACCCAGCAGCAACAGCAGAATAACTTGCCTGCCACGACATCTGCCACTGATTTGCGAGTGAACTCAGCTGCAGTGAACGTTGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTGTTCCCCGGACCGATACCGCAAGTGTCTGTGTACGGATTGCCTGCCGGTGCCAGGATTGAAAATGGGAAGCCTGTCCAGGATCTTGGTCAAGCTCATGCCAGTATACTGAATGGGGATCCAAATATTATACTTGGGCATCATCCGGGCCAGTCCCAAGTTACGGTATCTGCTCCCGGTGGACAACAGATACCCGTCTCACAGATCATTGCCACACAGTCTGGACAAACTCATGAAGCACTTGTGGCCCATAGTCAGCAACAAGCCGAGTTGGCGGCGGCCCAGGGCGCTGGCAACAATGCTCAGGTGTCAGTTAGTGCCGGCCAGGCCACTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGGGCCACCATTCCCAACAACACATAATGCAACAGCAATTGATGGCGCAGGCACGGCCGGATCACAACAACCAACAGATTCAACTGACGGTAAGCGAGGATGGCATAGTGACAGTGGTGGAGCCAGCGGGCACAAAGATGGTTGACAAGGAGGAACTGCATGAGGCCATCAAGATGCCCAACGACCACACGCTCACCGTGCATCAGCTGCAGCAGATAGTGGGACAACAGGTATTAGACAGCGTAGTACGCATAGAGCAAGCGACCGGTGAGCCGGCGAACATCTTAGTGACCCACAATCCTGATGGTACGACCTCTATTGAAGCCAGTGCCGCCGACCCTCTGATTGTCAAGGATGAGAAGAGTGCTAACAAAATAGAGACCGCACAGTTCGCTATACCTGCTGAGATAAAGGATATAAAGGGGATTGACTTGAAGAGTGTAGGAGCCATGGGCATGGAAGGTGCAGTCGTCAAGATTTCAGCCGGCGCGTCAGAACACGATCTACACGCGATGTATAAAGTCAATGTAGAAGATCTGTCACAACTCCTTGCTTACCATGAAGTATTTGGAAAACTTAATTCGGAAGGCCAGCAACAACAAGCAAAGGTAATAAGCGATGTGGAAGTAGAAGTGGAAGCCGGCACAAGCGCAGCCATGTCTGAAGCAGAATCCTCGCCTGGCCACCACTCGTGTGACATCTGCGGGAAAATATTCCAGTTCCGATACCAACTTATTGTTCATAGGCGTTATCACGGAGAAAGTAAGCCATTCACGTGTCAAGTTTGCGGTTCCGCATTTGCAAATCCTGTTGAATTGTCGAGGCATGGAAAATGCCATCTTGCCGGAGACCCGAACGAAAGACACGCCAAGAGAATGGCGCAAGATAAGCCATACGCTTGCACAACTTGCCACAAAACCTTCTCCCGTAAAGAACATTTGGACAATCACGTTCGAAGTCATACTGGAGAAACTCCTTATAGATGCGAATTTTGCGCAAAGACTTTCACCCGCAAAGAGCACATGGTCAACCACGTACGAAAACATACGGGTGAAACTCCGCACCGATGTGATATTTGCAAGAAGAGCTTCACCAGGAAAGAGCATTTCATGAACCATGTTATGTGGCACACAGGTGAAACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAAACACCTCACCGCTGCGACTTCTGTTCTAAAACATTCACTCGTAAGGAGCATCTCCTGAACCACGTCCGTCAACACACGGGCGAGTCGCCTCACCGCTGCAACTTCTGCAGCAAGTCATTCACACGCCGGGAACACCTTGTTAACCACGTGCGACAACACACCGGGGAAACGCCCTTCCAGTGCGGATACTGCCCTAAAGCGTTCACAAGGAAGGATCACCTCGTGAACCACGTCCGTCAGCATACGGGCGAATCTCCGCACAAGTGCTCGTACTGCACGAAATCCTTCACTCGCAAGGAACACCTGACGAATCATGTGCGACAACACACGGGCGAGTCTCCGCACCGATGTACTTACTGCGCCAAGTCCTTCACGAGGAAGGAACACCTCACTAACCACGTTAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGAGGGCCTTCGCGCGCAAAGAGCATCTCAACAACCACATCCGACAGCACACCGGCATCACGCCACACGCCTGCTCCTACTGCAGCAAGAGTTTCACCAGGAAGGAACATCTCGTCAACCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCACGAACCACGTGAACCTTCACACTGGAGAAACGCCACACAAATGTCCCTTCTGCACAAAAACATTTTCCAGAAAGGAACATTTGACCAACCACGTcagGATTCACACGGGCGAGTCTCCGCACCGCTGCGACTTCTGCCAGAAGACGTTTACTCGTAAGGAGCACTTGACGAATCATCTGAAGCAGCATACCGGCGACACCGCACACGTTTGCAAAGTGTGCTCCAAGAACTTCACCAGGAAAGAACATCTTGTTACACATATGAGGTCGCACAGTTGTGGCGAGCGTCCATTCAGTTGCGGCGAGTGTGGCAAATCTTTCCCATTGAAAGGCAACCTACTATTCCATGAAAGATCCCATGCCAAGAACAATGCTAATGCTGCCAATAAGCCGTACCGATGTGAAGTCTGCTCCAAGGAATTCCTCTGTAAAGGCCATTTGGTGTCTCATCGGCGCACACACGCGGAGTGGGTGGAAGGTGCAACTACCGGCGAAGCACCCGCTGAAACAGAAGACTGTACTGATAATAAGTGTATCAAAGTCGAGCCAGAACGAACTGAAAGAAAACATGAAGTCAGgacGACAGTCGAAACGAGACCAGCTGAGACCAATGTCGCACAAAGTCAGCCAAATACAGCTACTGTGATGATAACCAATAATCAACAAGTGCGCGCGGCGACCGTGGGCGCGGTAGGCGCGGTAGGCGCGGTGGGCGCGGTAGGCGCggtgggcggcgcgggcggcgcgcccaCGTtcgcgcacgccgcgccgcaCCACGCCGGCGCCAACATCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNQDHHNMNTGGGQPPGSSESQGQRVQATQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHPGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQQAELAAAQGAGNNAQVSVSAGQATHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMAQARPDHNNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKSANKIETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKVISDVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGITPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKNFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHAKNNANAANKPYRCEVCSKEFLCKGHLVSHRRTHAEWVEGATTGEAPAETEDCTDNKCIKVEPERTERKHEVRTTVETRPAETNVAQSQPNTATVMITNNQQVRAATVGAVGAVGAVGAVGAVGGAGGAPTFAHAAPHHAGANIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_01030446;
80% Identity: -