Gacu016671.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010000838.1:262441-276962[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.07 15 8.1 0.3 3 23 1330 1351 1328 1351 0.93 2 11 2.8 5.9e+02 3.1 0.2 3 23 1418 1438 1417 1439 0.95 3 11 0.14 30 7.2 0.1 2 23 1472 1494 1471 1494 0.96 4 11 0.29 61 6.2 0.1 2 23 1501 1523 1500 1523 0.92 5 11 0.32 66 6.1 0.2 3 23 1531 1552 1530 1552 0.96 6 11 0.0029 0.6 12.5 2.4 1 23 1557 1580 1557 1580 0.97 7 11 0.0016 0.33 13.3 1.5 1 23 1586 1609 1586 1609 0.97 8 11 0.00026 0.055 15.8 1.4 1 23 1615 1638 1615 1638 0.96 9 11 0.0007 0.14 14.4 1.2 1 23 1644 1667 1644 1667 0.97 10 11 0.046 9.6 8.7 1.6 1 23 1673 1696 1673 1696 0.93 11 11 0.00068 0.14 14.5 0.9 1 23 1702 1725 1702 1725 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGATCAGGACACTGGCACATAGAGCCCTGACTTTGTGCAGTAACCAGACACACTTAGAAAATGAACTGGCACAACTCACGAAAGATCTGGTGAGCAACGGCTATGATCATAAGAAACTGGCCCGGATCATCAAAGATGTGAAAACCCGACACCAAGACAATAACCGGACAGAGGCAGAACAAAAGACAAGAATCTCCCTGCCATATcgaagaaacttaaaacaaaacattgaaAGCCTCTACGGCGAGGAATTGTATCAGCTGACCAGGCGATTAAGCAGGACGAGATGCCGACTAGCGACTACTCGCAACGATCTCGAATTCTTACGGAGATGCAGGGAGGAGAAGGTGATCCCACATTTTCTAAGGATGAAGAGGCCACTCAAGACCTTAAAAGCAGCCCGCATCTATGACAACATGGAAAGGGCTCTTTTAAGAGAAAGGATTGGAGCGTACCGCCACCGGATTTGGAGTCTATCTTCAGATGAAATGTCCCTCAAAGAAAAAATCAGCACAGGAGTGGACTCAGACATGTGGGACACTATTGACCGCATTACTAAGACCAAGGCGGACAAGGCAGGTGCCCACAACAAGGTGAAGAAGGACAGGAAATGGAACAAACTAACCAACAaacaaaatcaagaaaatttgGTGGCCCTTAATAGGGCCGTTGACAAGTCAGACCAACAGCCTACCCTAACTACAGAGAGATCTGTAATAGTCAACTTGGCAGGCATAGAGTTATCTCAGGCAGCCACAGAGGTCCTCGAGAAAGGGATGAACTTTGCAGTCACACCCAAGCACACCCCGACAGAGGAGCTAGTGACCAGTATCGAAGCCGCTCTCACATACATGGATGAAGAGACGGCTGACACGATCAGACTGGAAGCAGCCCACCTCGTCAGGAGAGCCAGACCATCTAAGGACAATCTGTCGCTAGCCCAGAGACAGGCCCTATGCGAGCTACGGAAGAGAGATGACGTCATCATCACGAAGGCGGATAAAGGGAATATGACGGTCATTCTCAACCGAAAAACCTATGATGAAAAAATGCAGGATCTATTGACaccagataaatataaaaaagacatAAAGGATCCAACTAaacgaattgaaaataaaatcaagaaaatattgaaacagAGCAGCCTGGACGAAGCGAAAATTACTGAAATGACCCCCGGTGACTCAAGGATTCCCAGAATTTATGGTCTACCAAAAATTCACAAGGAAGGAATACCACTACGACCAATTGTTTCAATGATCGGGGCACCTACATACAGAGCAAGTAAGGTACTTGCCAGAGCTCTGAAATCGCACACAGGCCAATCTTTTTCCGCAGTGAGGAATTCGGTTCATTTGGTTGAGATCCTTAAACAGACGAAACTGGAGAAACATGATATGTTAGTGAGTTTCGATGTGGAGTCCCTGTTCACCAATCTTCCAGCGAAAGATTCCATTGCCATCATCAAAGACAACAAGTTCCTGGAAGGCAGCCTGATGGAATTAGCAGAACTAGTGTTAACTTCCTGCTATTTCCAGTACAAAGGAACAATATACCAGCAGAAGGATGGCGTAGCTATGGGcagccccctatcaccagttgtggccgatatatttatggaggattttgaaaggcaactcatggagaggactgaacacaaacccaagctgtggcttaggtatgttgatgatgtcctagcaatttggcagcacggtgcagaagaacttcagaaatttcttcactttatgaataacatgcacccagccatcaaattcaccatagaagaagaaaaagatggcaagttgccctttctggacctcctgattataagaggacacaatggtgatctggagcacaccgtctacaggaagcccacggccacaggacgtTATCTCCACTCGGACTCACACCATCACATGGCACACAAGATGAGTGTGATCAGGACACTGGCACATAGAGCCCTGACTTTGTGCAGTAACCAGACACACTTAGAAAATGAACTGGCACAACTCACGAAAGATCTGGTGAGCAACGGCTATGATCATAAGAAACTGGCCCGGATCATCAAAGATGTGAAAACCCGACACCAAGACAATAACCGGACAGAGGCAGAACAAAAGACAAGAATCTCCCTGCCATATGTCAACGGCGTGAGCGAGAAATTAGGCAGACTATTCAGAAGTCACAACACCGAAcgaagaaacttaaaacaaaacattgaaAGCCTCTACGGCGAGGAATTGTATCAGCTGACCAGGCGATTAAGCAGGACGAGATGCCGACTAGCGACTACTCGCAACGATCTCGAATTCTTACGGAGATGCAGGGAGGAGAAGGTGATCCCACATTTTCTAAGGATGAAGAGGCCACTCAAGACCTTAAAAGCAGCCCGCATCTATGACAACATGGAAAGGGCTCTTTTAAGAGAAAGGATTGGAGCGTACCGCCACCGGATTTGGAGTCTATCTTCAGATGAAATGTCCCTCAAAGAAAAAATCAGCACAGGAGTGGACTCAGACATGTGGGACACTATTGACCGCATTACTAAGACCAAGGCGGACAAGGCAGGTGCCCACAACAAGGTGAAGAAGGACAGGAAATGGAACAAACTAACCAACAaacaaaatcaagaaaatttgGTGGCCCTTAATAGGGCCGTTGACAAGTCAGACCAACAGCCTACCCTAACTACAGAGAGATCTGTAATAGTCAACTTGGCAGGCATAGAGTTATCTCAGGCAGCCACAGAGGTCCTCGAGAAAGGGATGAACTTTGCAGTCACACCCAAGCACACCCCGACAGAGGAGCTAGTGACCAGTATCGAAGCCGCTCTCACATACATGGATGAAGAGACGGCTGACACGATCAGACTGGAAGCAGCCCACCTCGTCAGGAGAGCCAGACCATCTAAGGACAATCTGTCGCTAGCCCAGAGACAGGCCCTATGCGAGCTACGGAAGAGAGATGACGTCATCATCACGAAGGCGGATAAAGGGAATATGACGGTCATTCTCAACCGAAAAACCTATGATGAAAAAATGCAGGATCTATTGACaccagataaatataaaaaagacatAAAGGATCCAACTAaacgaattgaaaataaaatcaagaaaatattgaaacagAGCAGCCTGGACGAAGCGAAAATTACTGAAATGACCCCCGGTGACTCAAGGATTCCCAGAATTTATGGTCTACCAAAAATTCACAAGGAAGGAATACCACTACGACCAATTGTTTCAATGATCGGGGCACCTACATACAGAGCAAGTAAGGTACTTGCCAGAGCTCTGAAATCGCACACAGGCCAATCTTTTTCCGCAGTGAGGAATTCGGTTCATTTGGTTGAGATCCTTAAACAGACGAAACTGGAGAAACATGATATGTTAGTGAGTTTCGATGTGGAGTCCCTGTTCACCAATCTTCCAGCGAAAGATTCCATTGCCATCATCAAAGACAACAAGTTCCTGGAAGGCAGCCTGATGGAATTAGCAGAACTAGTTAACCAGACACACTTAGAAAATGAACTGGCACAACTCACGAAAGATCTGGTGAGCAACGGCTATGATCATAAGAAACTGGCCCGGATCATCAAAGATGTGAAAACCCGACACCAAGACAATAACCGGACAGAGGCAGAACAAAAGACAAGAATCTCCCTGCCATATGTCAACGGCGTGAGCGAGAAATTAGGCAGACTATTCAGAAATTCCCTTTGGAACCACGGTATTCCAATCCTGAGCGAAGAAAATTCCAACATGCATTCGGGTGCTGAGGACGACCCTGCTTCGAACGAAAGTGACCAGATGGAGAAAAGTCCAGATGAAAACTCTGAAGAGGTGACTACCATTTGGGTTAAAGTCGAACCAACAATCGTCGAAGAGGATGATTCTGAAGCACCACATGACATGTCCGCAGATATGGATGAGTCTTCCCCGCCGCACGATCTGGAACTGGGTAATTCTATTTGTTGCAACGTTTGTGGGATTGTTCTAGATTCGCTGGATGAACTGAAGGAACATTTTTTGTCTACCCATGCAAAGAAGGAGGAAGGAGCTATGTACGGCGAAGCTACGGCAGTTGAAGAAAGTTCTGAAGACCCCGATGCCAAATTTGGTTGTGATTTGTGCGAATTTGTTGGTGACAATGAAGAAACTCTTGCAGAGCATAGAACAAGCATACACGAATCTTCAAGCAAGAGAGCAAAGCTGCAAGCTCTGCGTCCGAGACTTCTGTGCAGTATCTGCAATTACGCTGCAGGCTCTATACAACTACTGGAAGATCACGTGAACAGACATCACGTTTTCGAAAAAGAGGAGATTGTTGATTACGGAAAAGAAAAACCTCCTCCAGAACCCAAAATCCCAAAAACGTCCAAACCTCCTCCACCTTCGCTGAAATGCGACTTGTGTGATTTTGCTGCAGAGTACAACGACTTACTAAAACAGCATAAAGAAACTGCACACGGACCTAAAAAACCTCTTCCCTGCCCACACTGCGAGTACGCAGCAGTGGACTTCAAAGAACTCAAAATCCACGTTTCTCAAGAACATACAAGCGACGAGCCACAACTGTGCAACCACTGCGAGTACATAGCACCAGACCCCGAAGCACTGAAGACACACAAAGAGAGAGTCCACCCAAAAAAGAAGTATCAATGTCACATTTGTGACTATAGCAGCCAATACCCCAGCCATGTTAGCAGTCACATAAGAGCTCAGCACACCAAAGAAAAGCCATTCAAGTGTCCGCACTGCGATTTCAGGACGGTTCAGGCGAGCCAACTCAAGCCACACATTAACTCTAAGCACTCTGCAGACAAACCACACAAATGCGGCTACTGTGACTACAGCTCCGCTCAGGCCGGAAATTTAAAGAAACATGTCCTTAAGAAACACACTAATGACATGCCACATAAGTGTCCCTACTGTGAATACGGATCAGCTTATCCCGGACACTTAAAAAACCACATAATGGTAAAGCATACAAACGAACGACCACACAAGTGCACATTCTGCTCCTACAGTGCAGCACAGCTCAGCCAACTAAAAACACACGTTCTCGCAAAACACACCAACATTAAACCATACGTCTGCCACCTTTGCAACTATGGATCAGCCACACCTACCAACCTCAAGTACCACATAAGGGCAAAACATCCAGAAACTGAGCAGGACTCTTAA
- Protein Sequence
- MSVIRTLAHRALTLCSNQTHLENELAQLTKDLVSNGYDHKKLARIIKDVKTRHQDNNRTEAEQKTRISLPYRRNLKQNIESLYGEELYQLTRRLSRTRCRLATTRNDLEFLRRCREEKVIPHFLRMKRPLKTLKAARIYDNMERALLRERIGAYRHRIWSLSSDEMSLKEKISTGVDSDMWDTIDRITKTKADKAGAHNKVKKDRKWNKLTNKQNQENLVALNRAVDKSDQQPTLTTERSVIVNLAGIELSQAATEVLEKGMNFAVTPKHTPTEELVTSIEAALTYMDEETADTIRLEAAHLVRRARPSKDNLSLAQRQALCELRKRDDVIITKADKGNMTVILNRKTYDEKMQDLLTPDKYKKDIKDPTKRIENKIKKILKQSSLDEAKITEMTPGDSRIPRIYGLPKIHKEGIPLRPIVSMIGAPTYRASKVLARALKSHTGQSFSAVRNSVHLVEILKQTKLEKHDMLVSFDVESLFTNLPAKDSIAIIKDNKFLEGSLMELAELVLTSCYFQYKGTIYQQKDGVAMGSPLSPVVADIFMEDFERQLMERTEHKPKLWLRYVDDVLAIWQHGAEELQKFLHFMNNMHPAIKFTIEEEKDGKLPFLDLLIIRGHNGDLEHTVYRKPTATGRYLHSDSHHHMAHKMSVIRTLAHRALTLCSNQTHLENELAQLTKDLVSNGYDHKKLARIIKDVKTRHQDNNRTEAEQKTRISLPYVNGVSEKLGRLFRSHNTERRNLKQNIESLYGEELYQLTRRLSRTRCRLATTRNDLEFLRRCREEKVIPHFLRMKRPLKTLKAARIYDNMERALLRERIGAYRHRIWSLSSDEMSLKEKISTGVDSDMWDTIDRITKTKADKAGAHNKVKKDRKWNKLTNKQNQENLVALNRAVDKSDQQPTLTTERSVIVNLAGIELSQAATEVLEKGMNFAVTPKHTPTEELVTSIEAALTYMDEETADTIRLEAAHLVRRARPSKDNLSLAQRQALCELRKRDDVIITKADKGNMTVILNRKTYDEKMQDLLTPDKYKKDIKDPTKRIENKIKKILKQSSLDEAKITEMTPGDSRIPRIYGLPKIHKEGIPLRPIVSMIGAPTYRASKVLARALKSHTGQSFSAVRNSVHLVEILKQTKLEKHDMLVSFDVESLFTNLPAKDSIAIIKDNKFLEGSLMELAELVNQTHLENELAQLTKDLVSNGYDHKKLARIIKDVKTRHQDNNRTEAEQKTRISLPYVNGVSEKLGRLFRNSLWNHGIPILSEENSNMHSGAEDDPASNESDQMEKSPDENSEEVTTIWVKVEPTIVEEDDSEAPHDMSADMDESSPPHDLELGNSICCNVCGIVLDSLDELKEHFLSTHAKKEEGAMYGEATAVEESSEDPDAKFGCDLCEFVGDNEETLAEHRTSIHESSSKRAKLQALRPRLLCSICNYAAGSIQLLEDHVNRHHVFEKEEIVDYGKEKPPPEPKIPKTSKPPPPSLKCDLCDFAAEYNDLLKQHKETAHGPKKPLPCPHCEYAAVDFKELKIHVSQEHTSDEPQLCNHCEYIAPDPEALKTHKERVHPKKKYQCHICDYSSQYPSHVSSHIRAQHTKEKPFKCPHCDFRTVQASQLKPHINSKHSADKPHKCGYCDYSSAQAGNLKKHVLKKHTNDMPHKCPYCEYGSAYPGHLKNHIMVKHTNERPHKCTFCSYSAAQLSQLKTHVLAKHTNIKPYVCHLCNYGSATPTNLKYHIRAKHPETEQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -