Basic Information

Insect: Gonocerus acuteangulatus
Gene Symbol: -
Assembly: GCA_946811585.1
Location: CAMPFD010001891.1:398365-399831[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.17 35 6.9 4.6 1 23 39 62 39 62 0.95

2 15 0.041 8.5 8.9 2.7 3 23 70 91 68 91 0.94

3 15 0.0001 0.021 17.1 1.4 1 23 97 120 97 120 0.95

4 15 0.0015 0.32 13.4 1.6 1 23 126 149 126 149 0.94

5 15 0.33 68 6.0 2.0 3 23 157 178 155 178 0.90

6 15 0.016 3.2 10.2 2.9 1 23 184 207 184 207 0.95

7 15 0.0009 0.19 14.1 5.0 1 23 213 236 213 236 0.96

8 15 0.00026 0.053 15.8 3.4 1 23 242 265 242 265 0.96

9 15 0.29 61 6.2 1.9 3 23 273 294 271 294 0.93

10 15 0.00025 0.053 15.8 3.4 1 23 300 323 300 323 0.96

11 15 0.00043 0.09 15.1 2.0 2 23 330 352 329 352 0.96

12 15 0.28 59 6.2 0.9 2 23 359 381 358 381 0.93

13 15 0.00031 0.064 15.5 4.8 1 23 387 410 387 410 0.96

14 15 0.00041 0.086 15.1 2.2 2 23 417 439 416 439 0.96

15 15 0.0039 0.81 12.1 5.7 3 23 447 468 445 468 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.17	35	6.9	4.6	1	23	39	62	39	62	0.95
2	15	0.041	8.5	8.9	2.7	3	23	70	91	68	91	0.94
3	15	0.0001	0.021	17.1	1.4	1	23	97	120	97	120	0.95
4	15	0.0015	0.32	13.4	1.6	1	23	126	149	126	149	0.94
5	15	0.33	68	6.0	2.0	3	23	157	178	155	178	0.90
6	15	0.016	3.2	10.2	2.9	1	23	184	207	184	207	0.95
7	15	0.0009	0.19	14.1	5.0	1	23	213	236	213	236	0.96
8	15	0.00026	0.053	15.8	3.4	1	23	242	265	242	265	0.96
9	15	0.29	61	6.2	1.9	3	23	273	294	271	294	0.93
10	15	0.00025	0.053	15.8	3.4	1	23	300	323	300	323	0.96
11	15	0.00043	0.09	15.1	2.0	2	23	330	352	329	352	0.96
12	15	0.28	59	6.2	0.9	2	23	359	381	358	381	0.93
13	15	0.00031	0.064	15.5	4.8	1	23	387	410	387	410	0.96
14	15	0.00041	0.086	15.1	2.2	2	23	417	439	416	439	0.96
15	15	0.0039	0.81	12.1	5.7	3	23	447	468	445	468	0.93

Sequence Information

Coding Sequence: ATGTCCAAACATACTAAAGAGAAACCTCACTTGTGTCCCCATCGTGACTATAAAGCAGTTACGctatcaaatattaagagaCATACCATGTCTAAACATACTGATAAGAAACCTCACTCTTGTCCCCATTGTGACTACAAAGCAGTTAAGCTATCAACTGTTAAGAGTCATATCATGCacaaacatactgataataaacctcaCTTGTGTCCCCATTGTGACTATAAAGCAGTTAAGCTATCAAGTATTAAGAGACATATCATGTACAAACATACTGATAAGAAACCCTACTTGTGTCCgcattgtgactataaaactGTTAGGGCTAGGGATCTTAAGAGCCATATCATgtccaaacatactgataataaacctcaCTCTTGTCAACAATGTGACTATAAAACTGTTAGGGCTGCAGATCTTAAGAGCCATATCATGTTCAAACATACTGATAACAAACCTCACTTGTGTCCCCATTGTGACTACAAAGCAGTTAAGCTATCAACTGTTAAGAGTCATATCGTGTACAAACATACTGATATTAAGCCTCACTCTTGTCCgcattgtgactataaaacagtTTGGACTGCAAATCTTAAGAGACATATCATGTACAGACATACTGATAATAGACCTCACTCTTGTCAACATTGTGACTTTAAAACTGTTAGGGCTTCAAGTCTTAAGACCCATATCATGCgcaaacatactgataataaacctcaCTCTTGTCCtcattgtgactataaaacagtTAGTGCTCGGGATCTTAAGAGCCATATCAAGTCTAAACATACTGATAAGAAACCCCACTTGTGCCCgcattgtgactataaaacagtTTGGACTGCAGATCTTAAGAGCCATATCATGTacaaacatactgataatagACCTCACTCTTGTCAACATTGTGACTATAAAAGTGTTAGGGCTTCAGATCTTAAGATCCATATCATGCgcaaacatactgataataaacctcaATCTTGTCCTCATTGTGACTTTAAAACAGTTAGGGCTCGGGATCTTAAGAGCCATATCATGCgcaaacatactgataataaacctcaATCTTGTCCTCATTGTGACTTTAAAACAGTTTGGACTGCAGATCTTAAGAGCCATATCATGTacaaacatactgataatagACCTCACTCTTGTCAacattgtgactataaaactGTTAGGGCTTCAAGTCTTAAGACCCATATCATGCgcaaacatactgataataaacctcaATCTTGTCCTCATTGTGACTTTAAAACAGTTAGGGCTCGGGATCTTAAGAGCCATATCAAGTCTAAACATACTGATAAGAATCCCCACTTGTGTCCGCATTGtgattataaaacatttaaggCTGCACATCTTAAGAGGCATATCATGTCTAAACACACTGATAAGACCACAGGAGCTAGCAAAATCACCATCCGGCAACTATCCAATGACCAGGGGTGA
Protein Sequence: MSKHTKEKPHLCPHRDYKAVTLSNIKRHTMSKHTDKKPHSCPHCDYKAVKLSTVKSHIMHKHTDNKPHLCPHCDYKAVKLSSIKRHIMYKHTDKKPYLCPHCDYKTVRARDLKSHIMSKHTDNKPHSCQQCDYKTVRAADLKSHIMFKHTDNKPHLCPHCDYKAVKLSTVKSHIVYKHTDIKPHSCPHCDYKTVWTANLKRHIMYRHTDNRPHSCQHCDFKTVRASSLKTHIMRKHTDNKPHSCPHCDYKTVSARDLKSHIKSKHTDKKPHLCPHCDYKTVWTADLKSHIMYKHTDNRPHSCQHCDYKSVRASDLKIHIMRKHTDNKPQSCPHCDFKTVRARDLKSHIMRKHTDNKPQSCPHCDFKTVWTADLKSHIMYKHTDNRPHSCQHCDYKTVRASSLKTHIMRKHTDNKPQSCPHCDFKTVRARDLKSHIKSKHTDKNPHLCPHCDYKTFKAAHLKRHIMSKHTDKTTGASKITIRQLSNDQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -