Gacu015936.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010000794.1:189506-195001[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 25 7.4 2.6 1 23 126 149 126 149 0.95 2 12 0.00031 0.065 15.5 1.8 1 23 199 222 199 222 0.98 3 12 1.1 2.4e+02 4.3 0.1 1 23 228 251 228 251 0.84 4 12 0.0012 0.24 13.7 3.2 1 23 257 280 257 280 0.97 5 12 0.045 9.3 8.7 0.2 1 23 286 309 286 309 0.95 6 12 0.019 3.9 9.9 0.4 1 23 315 338 315 338 0.96 7 12 0.068 14 8.2 0.4 2 23 350 372 349 372 0.93 8 12 6.3e-07 0.00013 24.0 0.9 1 23 378 401 378 401 0.98 9 12 0.00031 0.065 15.5 0.2 1 23 407 430 407 430 0.94 10 12 0.017 3.6 10.0 5.5 1 23 436 459 436 459 0.93 11 12 6.5e-05 0.014 17.7 1.9 3 23 467 488 466 488 0.96 12 12 0.00017 0.035 16.4 0.3 1 23 494 517 494 517 0.97
Sequence Information
- Coding Sequence
- ATGGATAACCATTGTCATCCATGCTACCTCTCTTGTTGCTTAACAAGGTGCGACCGCTCGAGGGCCTGTAGAAGAAGTTCTCTGTCAGCCACACGTTGTATTGTTAAACCTAaaGATACAAACGTTGAAGAATCTGAATATAGAGAATCCTACACTGATGAAAATGAGCCATTCTTTGACGATCAAGATGAAGGCCTTGAAGATCTGTGCATTGCGCAGCTCCACACTGACTCTGATGATCAAGACTTCTCCTTTGACAACGAAGAGGCAGAGTTACCTGAAGAAACACCTACAGAACAAAAAGATTGTCCCTCTGAAACGTTAAATATAAAGCCTGCAGCAGTTTTCATTAAGTCAGAAGGAACTTTCAACCCATTTATATGTTTCCATTGCCAAGCTCATCTTGATAGTTTGGAAGATTTAAGGCTGCACATGAAGGATTTTCATTTTCCTGAAGAAATTGTCCACCTTTCTTATGAACACAGAAAACCTAAGGACAAATACTGCTCGAAATGTCCTTATTGCGAGTACCGACCTGCTAACCATCACTACTTGAAGTGTCATATTCGGTCGAAACATACAAACGAGAAGCCATTCAAGTGTCCACATTGTGATTTCCGTGCCGTGCAATTAAACTATCTCAAAGTGCACATTCGTAGTAAGCACGAAAATGAAAAACCATTCGCTTGTCCCTATTGTGAATATAAATCTGCTTATCGAGGTTCGATCAAACCTCACATTGCGTCTGCTCATATGATAGAGAAATCATTCCAATGTCCACATTGTGTGCATACTACGTCACGTCTGACGAGTCTGAAGATGCATCTGATGTCAGTTCACACAAAGGAAAAACCATTTTTGTGTCCCGAATGTCCATACAAAGCTGTTACTTCTTACATTTTGAAATATCACATAAGGTCACGGCACCAAAACGAGAAGCCTTTCCGGTGTAAGCAATGTGATTTTACTTCTTCTAATGGAAATGCTGTAACCAAACATGTTAGAGCAGTGCATACCTCAGAGGAGGAGAGAGAGGCTGCACTTCTTCCTTGTCCAAGCTGTGACTACAGGTCTCGAACTACAAACAGATTGAAAATGCACATAATGGCCAAACATACTAACGAGCGACCTTATAAATGCCCTGAGTGTGATTATAGAGTCTCCAATGCCAGTTACCTCAAGACGCACATCCGTCGAAAGCACAGCCTAGAGAAGTCCCATCCTTGCACCGAATGTGACTACGCTGCTAATACTGCCAGCGATTTGAAGCAGCACATTATGGCTCGGCATACTAAAGAGAAGCCTCATTTTTGTACGGAATGCGATTTCCGTACTGTGCACTCTGGGAGTCTACGAAAACACATCATGGCTTGTCACAAGAAGGAGCGACCGAACCTGTGCCCTCATTGCGACTACAGTTCCACACAACTGGGTCATTTGAAGCGTCACATTAAAGCGATACACGAGGCTGAGAAACCTTATGCCTGCCCTTACTGTGACTACCGTTCTGCTTACCCTACTGCCATGAAGAAGCACCTTCGGAAGATACATCCACATCCTGTTGCAGGCTCATTTGAACCGAATTTGGTGGATATAGACTTCTGTATGCTGTGTAATGGCGGCAGAATGGGCGCTGCACATCTTACTTTACTTCTTGCAGTGCTCTCAGCACTCCTGAGGTTGTCGATACGAATTGATGCTTTCTTCCCTTTACTGGTCTTCGAGACGCTTGATGTCTGA
- Protein Sequence
- MDNHCHPCYLSCCLTRCDRSRACRRSSLSATRCIVKPKDTNVEESEYRESYTDENEPFFDDQDEGLEDLCIAQLHTDSDDQDFSFDNEEAELPEETPTEQKDCPSETLNIKPAAVFIKSEGTFNPFICFHCQAHLDSLEDLRLHMKDFHFPEEIVHLSYEHRKPKDKYCSKCPYCEYRPANHHYLKCHIRSKHTNEKPFKCPHCDFRAVQLNYLKVHIRSKHENEKPFACPYCEYKSAYRGSIKPHIASAHMIEKSFQCPHCVHTTSRLTSLKMHLMSVHTKEKPFLCPECPYKAVTSYILKYHIRSRHQNEKPFRCKQCDFTSSNGNAVTKHVRAVHTSEEEREAALLPCPSCDYRSRTTNRLKMHIMAKHTNERPYKCPECDYRVSNASYLKTHIRRKHSLEKSHPCTECDYAANTASDLKQHIMARHTKEKPHFCTECDFRTVHSGSLRKHIMACHKKERPNLCPHCDYSSTQLGHLKRHIKAIHEAEKPYACPYCDYRSAYPTAMKKHLRKIHPHPVAGSFEPNLVDIDFCMLCNGGRMGAAHLTLLLAVLSALLRLSIRIDAFFPLLVFETLDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -