Basic Information

Insect: Gonocerus acuteangulatus
Gene Symbol: -
Assembly: GCA_946811585.1
Location: CAMPFD010008174.1:266443-272758[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0067 1.4 11.3 4.2 3 23 94 115 92 116 0.95

2 15 8 1.7e+03 1.7 0.0 5 23 156 175 155 175 0.91

3 15 0.0004 0.084 15.2 0.4 1 23 180 203 180 203 0.94

4 15 0.00024 0.051 15.9 3.4 1 23 209 232 209 232 0.96

5 15 0.0026 0.54 12.6 4.2 1 23 237 260 237 260 0.93

6 15 0.052 11 8.5 4.7 1 23 266 289 266 289 0.95

7 15 0.011 2.3 10.6 1.8 1 23 294 317 294 317 0.96

8 15 0.033 6.8 9.2 3.6 3 23 325 346 323 346 0.93

9 15 2 4.2e+02 3.6 0.5 1 20 351 370 351 374 0.70

10 15 0.012 2.5 10.5 1.1 1 23 380 403 380 403 0.97

11 15 0.0005 0.1 14.9 1.8 1 23 408 431 408 431 0.94

12 15 0.001 0.21 13.9 4.1 1 23 437 460 437 460 0.96

13 15 0.00021 0.043 16.1 1.2 1 23 465 488 465 488 0.93

14 15 0.00052 0.11 14.8 4.5 1 23 494 517 494 517 0.96

15 15 0.0011 0.22 13.8 2.1 1 23 522 545 522 545 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0067	1.4	11.3	4.2	3	23	94	115	92	116	0.95
2	15	8	1.7e+03	1.7	0.0	5	23	156	175	155	175	0.91
3	15	0.0004	0.084	15.2	0.4	1	23	180	203	180	203	0.94
4	15	0.00024	0.051	15.9	3.4	1	23	209	232	209	232	0.96
5	15	0.0026	0.54	12.6	4.2	1	23	237	260	237	260	0.93
6	15	0.052	11	8.5	4.7	1	23	266	289	266	289	0.95
7	15	0.011	2.3	10.6	1.8	1	23	294	317	294	317	0.96
8	15	0.033	6.8	9.2	3.6	3	23	325	346	323	346	0.93
9	15	2	4.2e+02	3.6	0.5	1	20	351	370	351	374	0.70
10	15	0.012	2.5	10.5	1.1	1	23	380	403	380	403	0.97
11	15	0.0005	0.1	14.9	1.8	1	23	408	431	408	431	0.94
12	15	0.001	0.21	13.9	4.1	1	23	437	460	437	460	0.96
13	15	0.00021	0.043	16.1	1.2	1	23	465	488	465	488	0.93
14	15	0.00052	0.11	14.8	4.5	1	23	494	517	494	517	0.96
15	15	0.0011	0.22	13.8	2.1	1	23	522	545	522	545	0.93

Sequence Information

Coding Sequence: ATGGTGGGATATGGTTGGTTTGAATCCTATCGGCAGCAGAGGCTTTTCTCATGTCAGGCCTCAATTTCCAGCTGTACCTTGGATATCGGCGCTATTGGCCCAGATGTCATCCACAGATATTTTAATTGGAGAGATTGTCTATCCTCTGATGCGAGTGAAAATCCTGAAGGAGCTGAATCTTGGCAGATTCTAAAAGATAAGCCGCCAATGGATCAAAAGGAAAGCTCAATGACCGCCTACACAATACCAACTACGCCTAAAAATAGAACTTTCATCTTTTGTCATGATTGTTCCTACAGTACGAGAAATTTGCAATCTTTGAAATTACATATTATGAGTAAACATCATCCAGATCAAGACAAGCAACCTCGGTCTTATAATTACGGGGACTACAATACTATTAAATCCACatctttaaaggaaaatatgaCTGAACGTACAAATGACAGGCCTCATTCATACCCTCAATGTCCCTTCACTACATCTATGTCTCCATATATAAAGGAACACATTAGGGAGaaacatagtgaaaaatgtCATTCTTGCCCTTATTGTGATTATTCTACTGCTAGACCAAGACGCTTAATAGTGCACATCATGGCTAAACACACAAATGACAGGCCTCATTCGTGTCCTAAATGTAACTTCAATACAACCACATCTTACTATTTAAAGCAACACATTAGGAATATACATGGTGAAAAATGTCACTTTTGCCCTCATTGTGATTATACTACTGCTAGGCCAACATGTTTAAAAGAACACATTATGGCTAAACATACAAATTACAGGCCTCATTCGTGTCCTGAATGTGACTTCAATACAACCACATATCAAGTTTTAAAGAAACACATTTGTAATAAACATAGTGGCAAGTGTCATTCTTGCCCTCATTGTGATTATACTACTGCTTGGCCAACATCTTTAAGAGAACACATCACGACTAAACATACAAATGACATGCCTCATTTGTGTCCTCAATGTGGCTTCAATACAGCCACATCTCAATGTTTAAAGCAACACATTAAGGATAAACATAGTGGAATATGCCATTCTTGCCCTCATTGTGATTACATTGCTGCATGGCCAAGACGCTTAAGAGAACACATCACGGCTAAACACACAAATGACAGGCCTTATTCATGTGTTCAATGTCCCTTTACTACAACTATTTCTCGTTATTTAAAGGAACACATTAGGAATAAACATAGTAGCAAATGCCATTCTTGCCCTCATTGTGATTATACTACTGCTAGGCCAAGACGCTTAAGAGTACACATCATGGCTAAACACACAGATGACAGGCCTCATTCATGTCCTGAATGTGACTTCAATACAACCACATCTTGCTATTTAAAGCAACACATTAGGAATATACATGGTGAAAAATGCCACTTTTGCCCTCATTGTGATTATATTACTGCTACGCCAACAAATTTAAGAGAACACATCATGGCTAAACATACATCTGACAGGCCTCATTCGTGCCCTAAATGTAACTTCAATACAACCACATCTTACTATTTAAAGCAACACATTAGGAATAGACATGGTAAAAAATGTCACTTTTGCCCTCATTGTGATTATAATACTGCCACGCCAAAATATTTAAGAGAACACATCATGGCTAAACATACAAATGACAGGCTCATTCTTGCCCTAAATTTAACTTCAATACAACCACATCTTACTATTTAA
Protein Sequence: MVGYGWFESYRQQRLFSCQASISSCTLDIGAIGPDVIHRYFNWRDCLSSDASENPEGAESWQILKDKPPMDQKESSMTAYTIPTTPKNRTFIFCHDCSYSTRNLQSLKLHIMSKHHPDQDKQPRSYNYGDYNTIKSTSLKENMTERTNDRPHSYPQCPFTTSMSPYIKEHIREKHSEKCHSCPYCDYSTARPRRLIVHIMAKHTNDRPHSCPKCNFNTTTSYYLKQHIRNIHGEKCHFCPHCDYTTARPTCLKEHIMAKHTNYRPHSCPECDFNTTTYQVLKKHICNKHSGKCHSCPHCDYTTAWPTSLREHITTKHTNDMPHLCPQCGFNTATSQCLKQHIKDKHSGICHSCPHCDYIAAWPRRLREHITAKHTNDRPYSCVQCPFTTTISRYLKEHIRNKHSSKCHSCPHCDYTTARPRRLRVHIMAKHTDDRPHSCPECDFNTTTSCYLKQHIRNIHGEKCHFCPHCDYITATPTNLREHIMAKHTSDRPHSCPKCNFNTTTSYYLKQHIRNRHGKKCHFCPHCDYNTATPKYLREHIMAKHTNDRLILALNLTSIQPHLTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -