Gacu064409.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010008174.1:20417-24169[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.2 8.8e+02 2.5 3.3 3 23 518 539 516 540 0.95 2 18 0.0047 0.98 11.8 2.3 1 23 574 597 574 597 0.96 3 18 0.0009 0.19 14.1 2.5 1 23 602 625 602 625 0.93 4 18 0.029 6 9.3 3.8 3 23 633 654 631 654 0.92 5 18 0.012 2.6 10.5 0.5 1 23 659 682 659 682 0.94 6 18 0.0035 0.73 12.2 4.7 1 23 688 711 688 711 0.94 7 18 0.0031 0.66 12.4 1.9 1 23 716 739 716 739 0.93 8 18 0.0033 0.69 12.3 5.0 1 23 745 768 745 768 0.94 9 18 0.56 1.2e+02 5.3 0.7 1 23 773 796 773 796 0.91 10 18 0.013 2.6 10.5 2.4 1 23 802 825 802 825 0.96 11 18 0.019 3.9 9.9 4.2 1 23 831 854 831 854 0.94 12 18 0.0066 1.4 11.4 0.4 1 23 859 882 859 882 0.94 13 18 0.005 1 11.7 2.0 1 23 888 911 888 911 0.96 14 18 0.00074 0.16 14.3 1.1 1 23 916 939 916 939 0.97 15 18 0.0052 1.1 11.7 3.3 1 23 945 968 945 968 0.95 16 18 0.0043 0.89 12.0 2.8 1 23 973 996 973 996 0.95 17 18 0.0028 0.59 12.5 3.2 3 23 1004 1025 1002 1025 0.92 18 18 0.0071 1.5 11.3 2.0 1 23 1030 1053 1030 1053 0.95
Sequence Information
- Coding Sequence
- ATGAAGAAGGAAGATTACATGAAGAAAATGGAGGAGCTACTGGATAATAAGACATATGTACCGCTAAATGGCGACCCGACTAAAGagataaacaataaaatcattaaaacatttaaagaatgcacagctattaaagaaaaattcccAAGACTAATAAAATCCGACCCAGTGCCTCCAAGAATTTACGGTTTGCCAAAGATTCATAAAGAAGATATTCCACTAAGGCCAATTGTTAACTCCATTGGCTCGCCGACATATGGTATTGCGCAATATATTGCCAGGAAGCTCAAGCCACACTTAGGGATGGCAGAATATCATATAAAAGATTCAAGAGACTTCGTTGAGAAGATCAAGTCTATTAAAATAACGAAGGAAGAGTTTTTGGTAAGTTTTGATGTGAAGTCTTTGTTTACCATGGTCCCATTGGAAGAAACACTGCAGCTaatgaagaagtttttgaaCGACGAAGAAATGAAATTGGCGCAACTCTGTTTAAAATCTTCTTACTTCTTGTTTAatggaaaatattataaacagatTGAAGGCGCTAGCATGGGTTCACCACTTAGCCCAGTGGCAGCAGAAATATACATGGAGGAGTTTGAGAAGACAGCTATAGAAACTGCGGAGTGGAAACCAAGGTATTGGTTCAGATATGTTGACGACACGTTCGTGATTTGGCCTCACGGAAAAGAGACATTAAAACGCTTTTTCGAGCACATTAACAAGATTCACGACAACATCAAGTTCACCATGGAAATTGAAGAAGATGGGGTATTGCCGTTCCTAGATGTGAAAGTAGAGAAAATTGAAAACCGTCTAGAACATTCGGTTTACAGAAAACCGACTCACACGGACAGATACCTAAACACAGCTTCTCATCACCACCCAGCCCAGAAGAACACTTTGATCACTACCCTCATGACCAGAGCCATCAGGAGTTCTCAACCAAACCATCTCAGAAAAGAAGAGAGACACCTAAAGTCAGCTCTAAGAAAAAACGGGTACACGGACGAAACTATAAAAAGGCAAACCACCAAAGCAAAAAGAAATGCAAAGTCGACAGAAAAGGGAATGAAAAAAGACCCAAACGAGAAAAAAGGAATCATTCCCTATGTTAAAGGTACTACAGAGAAGATTACAAAGTTTCTAAAGAAACATAGCATAAAAACAGTGTACACCACTGACTTCAAgttaagtcaaataataaataaccccaaaGATAATTTACAGTTAAGATCACCAGGTGTCTACAGTATCCCATGCTCCTGTGGAAAAGAATACACTGGACAGACAGGAAGATTGGTGTGCACTAGAATAACAGAACATAtgaagacggttaagaatggcaacattgaaaaatcggcggtagcagaacattttATAACACTAATCATGCTACCCATTCGACCAAATTGTCTATCCTCTGTTGCGAGTGAAAATCCTGAAGGAGCTGAATCTGGGCAGATTCTAAAAGCTAAGCCGTCAATTGATCAAATGGAAAGCTCAATGACCACCTACACAATACCAACTACATCTACTTTTATCTTTTGTCGTGATTGTTCCTACAGTACGAGAAAGccgcaatttttaaaatttcacatTATGACTAAACATCATCATGACAAGCAACCTCAATCATACACTTACAGTGACTACAATACTAACAAATCACaatctttaaaagaaaatatgactGAAAGTACAAATGAAAGGCCTCATTCATGTCCTCAATGTGACTTCACGACAACCAAATTTCCCTATTTAAAGCAACACATTAGGAATATACATAGTGAAAAATGTCACTTTTGCCCTCATTGTGATTATTCTACTGCTAGGTCAACATATTTAACAGAACACATCATGGCTAAACATACAAATGACAGGACTCATTTGTGTCCTCAATGTAACTTCAATACAACCACATCACGATATTTAAAGAAacacattactcaaaaacataatgaaaaatgtcACTCCTGCCCTCATTGTGATTATGCTACTGCTTGGCCATCATCTTTAAGAGAACACATCATGGCTAAACATGCAAATGACAGGACTCATTCGTGTCCTCAATGTGACTTCACTACATCAACATCGCAATATTTAAAGAAACACATTATTCataaacataatgaaaaatgtcACTTTTGCCCTCATTGTGATTATAATACTGCTCGGGTATCATCTTTAAGAGATCACATCATGGCTAAACATACAAATGACAGGACTCATTCGTGTCCTCAATGTGACTTCACTACATCAACTTCGCGATATTTAAAGAAACACATTATTCataaacataatgaaaaatttCACTCCTGTCCTCATTGTGATTATAATGCTGCTTGGCCAAGATATTTAAGAGAACACATCATGGCTAAACATACAAATGAGAGACATCATGCCTGTCCTCAGTGTGCCTTCGCTACAATCACATCGCGACATTTAAAGGAGCATATCAAGACTAAACATACAAATGACAGGACTCATTCATGTCCCCAATGTGACTTCAATACTGTCACATCGCGATATTTAAAGAAACACATTATTCataaacataatgaaaaatgtcACTCCTGCCCTCATTGTGATTATACTACTGCTTGGCCATCAGCTTTAAGAGTACACATCATGGCTAAACATACAAATGACAGGACTCATTCGTGTCCTCAATGTGACTTCACTACTTCAACATCTCTATATTTAAAGCTACACATTATTCGTaaacataatgaaaaatgtcACTCTTGCCCTTATTGTGAGTTTACTACTGCTAACCGACCATATTTAAGAGTACACATCATGACTAAACATACAAATGACAGGACTCATTCGTGTCCTCAATGTGACTTCAATACAAACACATCACGGTATTTAAAGAACCACATGATTTATAAACATAATGGAAAATGTCACTCTTGCCCTCATTGTGAGTTTACTACTGCTAACCGATCATATTTAAGTGAACACATCAAGGCTAAACATACAAATTACACACCTCATTTGTGTCCTCAATGTGACTTCACTACATCAACTTCTCGATATTTAAAGAGacacattactcaaaaacataatgaaaaatgtcACTCTTGCCCTCATTGCGAGTTTACTACTGCTAGCCGACCATCTTTAAGAGAACACATCAAGGCTAAACATACAAATGACACACCTCATTCGTGTCCTCAACAAACATAA
- Protein Sequence
- MKKEDYMKKMEELLDNKTYVPLNGDPTKEINNKIIKTFKECTAIKEKFPRLIKSDPVPPRIYGLPKIHKEDIPLRPIVNSIGSPTYGIAQYIARKLKPHLGMAEYHIKDSRDFVEKIKSIKITKEEFLVSFDVKSLFTMVPLEETLQLMKKFLNDEEMKLAQLCLKSSYFLFNGKYYKQIEGASMGSPLSPVAAEIYMEEFEKTAIETAEWKPRYWFRYVDDTFVIWPHGKETLKRFFEHINKIHDNIKFTMEIEEDGVLPFLDVKVEKIENRLEHSVYRKPTHTDRYLNTASHHHPAQKNTLITTLMTRAIRSSQPNHLRKEERHLKSALRKNGYTDETIKRQTTKAKRNAKSTEKGMKKDPNEKKGIIPYVKGTTEKITKFLKKHSIKTVYTTDFKLSQIINNPKDNLQLRSPGVYSIPCSCGKEYTGQTGRLVCTRITEHMKTVKNGNIEKSAVAEHFITLIMLPIRPNCLSSVASENPEGAESGQILKAKPSIDQMESSMTTYTIPTTSTFIFCRDCSYSTRKPQFLKFHIMTKHHHDKQPQSYTYSDYNTNKSQSLKENMTESTNERPHSCPQCDFTTTKFPYLKQHIRNIHSEKCHFCPHCDYSTARSTYLTEHIMAKHTNDRTHLCPQCNFNTTTSRYLKKHITQKHNEKCHSCPHCDYATAWPSSLREHIMAKHANDRTHSCPQCDFTTSTSQYLKKHIIHKHNEKCHFCPHCDYNTARVSSLRDHIMAKHTNDRTHSCPQCDFTTSTSRYLKKHIIHKHNEKFHSCPHCDYNAAWPRYLREHIMAKHTNERHHACPQCAFATITSRHLKEHIKTKHTNDRTHSCPQCDFNTVTSRYLKKHIIHKHNEKCHSCPHCDYTTAWPSALRVHIMAKHTNDRTHSCPQCDFTTSTSLYLKLHIIRKHNEKCHSCPYCEFTTANRPYLRVHIMTKHTNDRTHSCPQCDFNTNTSRYLKNHMIYKHNGKCHSCPHCEFTTANRSYLSEHIKAKHTNYTPHLCPQCDFTTSTSRYLKRHITQKHNEKCHSCPHCEFTTASRPSLREHIKAKHTNDTPHSCPQQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -