Gacu053602.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010004422.1:199109-202732[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00021 0.044 16.1 1.1 1 23 461 483 461 483 0.99 2 10 2.2e-06 0.00046 22.3 1.6 2 23 490 511 490 511 0.98 3 10 0.2 41 6.7 0.4 1 19 514 532 514 534 0.94 4 10 0.0025 0.52 12.7 0.7 1 23 541 563 541 563 0.95 5 10 4.7e-07 9.7e-05 24.4 1.5 2 23 569 590 569 590 0.97 6 10 2.8e-07 5.8e-05 25.1 5.6 1 23 596 618 596 618 0.98 7 10 0.0034 0.71 12.3 2.9 1 23 622 644 622 644 0.94 8 10 2.1e-07 4.4e-05 25.5 0.5 2 23 649 670 648 670 0.97 9 10 0.76 1.6e+02 4.9 1.0 2 23 678 697 677 697 0.91 10 10 3.2e-05 0.0067 18.6 2.7 1 23 703 726 703 726 0.98
Sequence Information
- Coding Sequence
- ATGCTTCAAGCTCCAGATACAGAAGTACAGCAGCAAGAATTTTCTGGGGTCGAAAATGTCCTTTTATTCCCTCCAActtctttaaataatatttgtactgATTGGAATTTCACAGAAGGTTTAAGCCAACAAGGGACAAGTGTTATTCAAGATAAAGATTATAATTTTGGGTCGTTCCCTTGTAATTGTACATCCCTCCAAGGGAATTTAACTGACACATCTTGGAATATGGGGTACCAGTATAATGGTAATCAGTACAACCCCTCTCCATGTTGTTTATTAGACCAAGGGAAAAGACAAACAGATATTGTCCCACCTCAACTATTGACAGATCTTGAAACAGCACCATTTGTGAAAGATTTTATTGACAGCTATCCCAATGTTTCAAAGCCTGGAAGCGCCTCTAATGATTGCAGGATTTTCATGCAGTCACAAAACGTTTATAACTCCAATTTCTCCCCACAGGATCCTGGCATTTATCCTCCTTACAATACAAGCAGCTCTAATAACTTCAATTTTTGTGTCGAAACTGACTGTTTAGATAAACTTTGCAGTCCTTCAAAGGGCAGTTTCTCTTCCTGTTTATTGGATCAGAATCCAATAGATATTGAAACTATTCAGCCTGAAGCCATTTCAAAAGATGCTACAGCAGATTTATCAAGCTTCATTGGATTGAATAATGTTGCTGAAAGTTCCATCTTAAGAGTTGAGAGTGAAGATGACAGTGATATTGTCGTTGAGGACTCAGACACAGAAAGTGAGgTTTCAATAGACGTCGGACCATACATCGGGGACAAAGTAGTGAATAAGGTTACTGTAATGAGATGTTTCGTTTGTAACTTGTGTTATTCAGAACAATTCGAATCAAACTTTGTCCAAGTGAATAGCTCTTTCCCCCTGACCTTCATATCTCAGACTCCAGTTATGTTAAAACTAATCGAAATAATACCTATTGACATGCAGACAtctgtaaaatttgaaaatactCTCATTTGCCGAAGATGCCTTAACCTGATCGATACAATTGAAAACTTAGAAGTGAGATTAGTTAGCGTGAAGAAAGCCCTGTGTGATTTTGTTTCCCGGGCTAGTAAGGACATTATTGATGATGAGTTAAATATTCTTCAAGCAAATAATGAATTGtgtattaattttgatgatccAGTTCCAAAGGAAATTCTTCCGAAGGaggtCACAAAAATTATTGACCCTCCAGATGTTATTGATAAGATTCCCAACACAGTTAGCACTGGTGTCAATACAGATTCTTGTGATAAAGAAAAtacagataaaaatgaaaaaaataataaaaacccaGAAGTTGTATCAGCTTATTTACTTGATAGCGGAAATTCCCATAGAATTTTCGTCAGTAAGAGGTATCAGTGCGAACGTTGTGGGAAAATGTACAGATGGGAGAAGGAATTGAACTCTCACTTGCGGAAGCATGCAGGCGAGTTTACAGAGAAATGTAAAGAATGTGGTAAAGGATTTATGAAGTCTACAAATCTGGAGCTCCACATGCGTAAACACAGGAATCATGTTTGTTTGAAGTGTAGCGCAAGTTTCACGAAAGAAAACGATTTGGTTGAACATTCTTCTCAGTGTgataaaaacaaatttctttGTAACCAGTGcccattactttttacatctgaagataaattaaaatctcATTTGGAAAAGCATAATAAGGAGCCTAATGTGTGCAATGTTTGCTCGAAAACGTTCAAGCATCCCAGCTACCTCGAAGCCCATATGAAAAGTCATTCAGAAGATAAGCCGTTTTCGTGTGACAAGTGTGATCGATCGTATAAAAATCAGAGCCATCTGCGTAGACATCAGAGGAGCCACGACGTGCTACATGAATGTACAGTATGTCATACGACATTTCCCAATCTTTTAGACCTTCAAAAACATTCATTGCAGCATCGGGACAAAATTAAGTGTGATGTTTGTGGTAAGATGTTTGCAACTAAATCGAACTTGCAAGAACACAAAAAAATTCATACAGGGGAGCAAACGAAAAAAGAATGTCCTGTCTGTAAGAAAATGATAGTCTCAAACTTCAAAGCTCATGTGAGGTCTCATTCTGAGGAAAAAGCATTTAAATGTAAACTTTGTGATACTGATTTTACATTTAAACAATCTTTGGTTAAGcatatgaaaataaaacatcCGAATGAGGATCATAATATTTAG
- Protein Sequence
- MLQAPDTEVQQQEFSGVENVLLFPPTSLNNICTDWNFTEGLSQQGTSVIQDKDYNFGSFPCNCTSLQGNLTDTSWNMGYQYNGNQYNPSPCCLLDQGKRQTDIVPPQLLTDLETAPFVKDFIDSYPNVSKPGSASNDCRIFMQSQNVYNSNFSPQDPGIYPPYNTSSSNNFNFCVETDCLDKLCSPSKGSFSSCLLDQNPIDIETIQPEAISKDATADLSSFIGLNNVAESSILRVESEDDSDIVVEDSDTESEVSIDVGPYIGDKVVNKVTVMRCFVCNLCYSEQFESNFVQVNSSFPLTFISQTPVMLKLIEIIPIDMQTSVKFENTLICRRCLNLIDTIENLEVRLVSVKKALCDFVSRASKDIIDDELNILQANNELCINFDDPVPKEILPKEVTKIIDPPDVIDKIPNTVSTGVNTDSCDKENTDKNEKNNKNPEVVSAYLLDSGNSHRIFVSKRYQCERCGKMYRWEKELNSHLRKHAGEFTEKCKECGKGFMKSTNLELHMRKHRNHVCLKCSASFTKENDLVEHSSQCDKNKFLCNQCPLLFTSEDKLKSHLEKHNKEPNVCNVCSKTFKHPSYLEAHMKSHSEDKPFSCDKCDRSYKNQSHLRRHQRSHDVLHECTVCHTTFPNLLDLQKHSLQHRDKIKCDVCGKMFATKSNLQEHKKIHTGEQTKKECPVCKKMIVSNFKAHVRSHSEEKAFKCKLCDTDFTFKQSLVKHMKIKHPNEDHNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -