Gacu043758.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010002932.1:29219-41631[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.001 0.22 13.9 0.2 1 23 162 185 162 185 0.97 2 17 8e-06 0.0017 20.5 1.4 2 23 190 212 190 212 0.96 3 17 0.1 22 7.6 0.2 2 19 352 368 351 368 0.92 4 17 0.011 2.3 10.6 0.7 2 20 399 417 398 422 0.91 5 17 0.0087 1.8 11.0 0.0 3 21 500 518 500 519 0.95 6 17 0.13 27 7.3 2.0 3 21 524 542 521 546 0.85 7 17 0.0066 1.4 11.4 6.4 1 23 570 592 570 592 0.98 8 17 0.26 53 6.4 0.1 3 23 601 622 600 622 0.92 9 17 0.26 53 6.4 4.1 1 23 627 649 627 649 0.91 10 17 0.00042 0.088 15.1 2.1 2 23 654 676 653 676 0.96 11 17 0.0029 0.61 12.5 0.3 3 23 681 701 680 701 0.97 12 17 0.00011 0.022 17.0 1.0 2 23 708 729 707 729 0.95 13 17 0.0005 0.1 14.9 0.1 1 23 736 758 736 758 0.98 14 17 0.0021 0.44 12.9 5.9 1 23 764 786 764 786 0.99 15 17 2.6e-06 0.00054 22.1 0.8 1 23 790 812 790 812 0.99 16 17 4.6e-06 0.00096 21.3 1.8 1 23 818 840 818 840 0.98 17 17 0.33 69 6.0 5.9 1 23 846 869 846 869 0.96
Sequence Information
- Coding Sequence
- ATGTCCCGACGAGCCCCGGGGTTTAAAAAACCACGGGGCTCGCAAGATGATCCTCAGGGAGGGAGATGCCCAGTACGCACAGATTCCGCCCTGGAGCCGAGTGGAACCACACCGCCTCCCTGGAACCACAACGTGGCCCCTGTCACCAACACCACCCGTAGAGAAAAACTACAAGAAATTCTCGGGCCTAAGTATCTCGTCCTCACTACTATTAAAGACCAAATTTGTTGGGACTGTGCCAGCTATATGAATTGGATAGACAAAAGTCAGCATAAAATTGATTTGatgaaagaatattttcttgataaaaTCACTGCTAAATACAAAAAGATTGAGGTGAATCTCAATGAAAAATCTGATGAAGTTCTGGAACCACCTGTAAATGAAACGCAGAAGATTCCAGCAAAATTAACTCAGGCAGTTCATCATgatatcaatgaaaataaagatgaTCCAACCTACAAGGGGAGACGCAGGAAAGAGTATGCATGTAAATATTGCGCGAAAGAGTATGTGAGCCTTGTATCGCTCACGATGCACATCCAGCGGATGCACGGAGGAAAGGAAGTATGTGATGAATGTGGCATGAGATTCGAAACAAAGACTAAGCTTAAAAAGCATATGAAAATAAAGCATACAGCATCTGAGAAGGAGCTTACATGTGTTTCTTGTGGCTTCcacaccacgaataccgagatCTACTGTAGGCATGTCTGCAATTCGAGTATTGTTTCCCTCACATGCATTACGTGTAATAAAAGaTATGTGGACTCCAACTTTCGACAGGATTCAGGGACATACCAGTGTCAGTCCTGTCAATCGGAGCTTGCTATAGCACAGGCGGAGTTAGCAAAAAATGAAGAAGAGGAGGAAGAAGAAATAGATAAGGACACAGAACCTGCACCCCCTCCTCAGCCTTCAACACTTCCTCTCACTCAGgaGATGAGTGGTTCAGAACTTGCTGCTGAAATGCCTGAATTTTTCAAGGAGCCAGAACTGCGTGAAGAagataaaatcataaaaagtgATGAAAGCGAATGTAACTCATACTTGAGGTGTGAGGGATGTGGTGAACAGTTCAAGCTTAGTGATCTAACTCAACATCCTTGCTTTATTCGTGGAGATTCCGTCGAGTTTGTCGAAGTTGAATCACCTTTTGTTGGGAAACAAGTTCCTCCGGGCACGTCCATTCTACAGTGTAAAACTTGTGGCTTTCAATTTTCCAGCATCGAAGCTCTTCGCAGTCATTGGGATCACACAGGTCATCTCCGAGAAGTGAGTACCGGCTCTATTGAAGTGAATAGAATCCGAGATAAGTTCAGGAAGACTGAGGCGACGTTCAAGGTTGTCAAacagaatttcaatattagAGCAATAAGACCGGGAGAAAATGAACAAGCACTTCGCTTTGACGAAAATTACAAAGATATGTTTATTCGAATAAGTGATAACAAGATGGATCCTTTTGAGGACTTGATACGCCGAGATGGCAAAGGTTGTGGAACTTGTGGTATTACTTTCCCTAATGCTGAAATGTTAGCAGATCACCAGAAGAGTGATTGCTTGACCTGCATTACATGTAATATTTCATTCTATGAcaataaattgttaaaaaagCATTACCTTTTTACAGGTCATGCTGCCAAGTTACGCTTACCACCATGTCCAATAAACTCAAATGATACAGAAATGAGAAATACATTGGGTTTTAAATGCCACCGATGTGTCAAAACCTTCCAATCGAGATTTCttcttaaaaaacattttcaggtTCACTACAGAGGCACTGAAAAAGGTGCTTGTCAGTTCTGCCTGACAGAATTTGAAAACAAAAGCGACATTCAACAGCATGTTCTCGAAGCTCATGGCGCACATTTATACAAATGTAGCCATTGTGAAAGAACATTCATGTCTGATACATTCAGAAATAGACATGAAGCGAAACATAAGTCGCCCATTCAATGTGAAACTTGCAACATGAAATTTACAAACCATAAGTCTTTGATGCTTCACATTGAAACATATCACCAAGGAGGTAGCTGTCGCCTCTGTGGAAAGGTTATAGATGATCCCCTATCTCTCCGGCGACATGAACGACGCCATTATTTTGATAAGGAACTCGAATGTGACATATGCAAAAAAAGATTCAGAAGCAAAACCCTTCTTCTTGCCCACTCTAAACTCCACTCTCCAGACGAAATAAACTTCCAGTGTGAAATTTGCGAGTTGGGTTTTAATTCAGAAGAAACCCTGGAAGAACACCGTCTGAGTCATACTAAATCTGGGAAGTACAAATGCCATAAATGTAATGCAACTTATGACAGTAGAGCACATTTCTGGATGCACACAAAAACACACGAAGCATGTTATGTTTGCAGTGTGTGCAATCGAAGCTTCCGAGATACGTCATTACTTGCTATACACAGACGCAAGCACTGGCGAGTGAGGCCTTATCAGTGCCCTCAATGTCATAGGGCATTTTCCGTCCCTGCAACCCTACGTAGGCATCTCCATGTTCACACTAGAATGTATCCTCATAGGTGCGGGATTTGCAAAAAAGGTTTTCTCACGAGACATGCCTACCATCGACACACAGAAACAGTTCATGCTGTTACTAATAGTTTTCCACAGAGACGACCAAACATTCCATCCCTTCCTCTCAATGCCACtgatgaagatatttttcatgCTGCGGACACTCTTATTGCTGACGATTCTATAATGTTCAATGAGTACCAAAACAAAGACCTAGAGCAGACTTCATCAACTGGTTTGATTACAAATGAAGTTGTAGTTGAGACTACTGAATTGTTTGATGAAATTCTTCACTAA
- Protein Sequence
- MSRRAPGFKKPRGSQDDPQGGRCPVRTDSALEPSGTTPPPWNHNVAPVTNTTRREKLQEILGPKYLVLTTIKDQICWDCASYMNWIDKSQHKIDLMKEYFLDKITAKYKKIEVNLNEKSDEVLEPPVNETQKIPAKLTQAVHHDINENKDDPTYKGRRRKEYACKYCAKEYVSLVSLTMHIQRMHGGKEVCDECGMRFETKTKLKKHMKIKHTASEKELTCVSCGFHTTNTEIYCRHVCNSSIVSLTCITCNKRYVDSNFRQDSGTYQCQSCQSELAIAQAELAKNEEEEEEEIDKDTEPAPPPQPSTLPLTQEMSGSELAAEMPEFFKEPELREEDKIIKSDESECNSYLRCEGCGEQFKLSDLTQHPCFIRGDSVEFVEVESPFVGKQVPPGTSILQCKTCGFQFSSIEALRSHWDHTGHLREVSTGSIEVNRIRDKFRKTEATFKVVKQNFNIRAIRPGENEQALRFDENYKDMFIRISDNKMDPFEDLIRRDGKGCGTCGITFPNAEMLADHQKSDCLTCITCNISFYDNKLLKKHYLFTGHAAKLRLPPCPINSNDTEMRNTLGFKCHRCVKTFQSRFLLKKHFQVHYRGTEKGACQFCLTEFENKSDIQQHVLEAHGAHLYKCSHCERTFMSDTFRNRHEAKHKSPIQCETCNMKFTNHKSLMLHIETYHQGGSCRLCGKVIDDPLSLRRHERRHYFDKELECDICKKRFRSKTLLLAHSKLHSPDEINFQCEICELGFNSEETLEEHRLSHTKSGKYKCHKCNATYDSRAHFWMHTKTHEACYVCSVCNRSFRDTSLLAIHRRKHWRVRPYQCPQCHRAFSVPATLRRHLHVHTRMYPHRCGICKKGFLTRHAYHRHTETVHAVTNSFPQRRPNIPSLPLNATDEDIFHAADTLIADDSIMFNEYQNKDLEQTSSTGLITNEVVVETTELFDEILH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -