Gacu027782.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010001539.1:526496-532496[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.7e-05 0.0098 18.1 1.2 1 19 255 273 255 277 0.90 2 12 6.9e-05 0.014 17.6 0.2 2 23 280 302 280 302 0.97 3 12 2.6e-06 0.00054 22.1 0.5 3 23 333 353 332 353 0.98 4 12 8.4e-05 0.017 17.3 0.3 1 23 359 381 359 381 0.97 5 12 0.0011 0.23 13.8 1.8 1 23 387 409 387 409 0.98 6 12 3.4e-06 0.0007 21.7 1.2 1 23 415 437 415 437 0.98 7 12 0.0039 0.82 12.1 1.8 1 23 443 465 443 465 0.96 8 12 3.6e-06 0.00074 21.6 0.4 1 23 473 495 473 495 0.98 9 12 0.002 0.42 13.0 0.2 1 23 501 523 501 523 0.96 10 12 4.2e-05 0.0087 18.3 1.5 1 23 529 551 529 551 0.98 11 12 0.00017 0.036 16.4 0.2 1 23 557 579 557 579 0.98 12 12 0.00021 0.043 16.1 1.3 1 23 585 607 585 607 0.98
Sequence Information
- Coding Sequence
- ATGGCAACTGTCAATTTACAACTTGCAGAATTCAGTGATTTATGCCGACTATGTGGCTCGAAAACGAGTGTCCTAATGGGTCTGCATATATTCGAACGAGAAGGAGATTTGAggcaaatatacaaaaaaattaaggcCTGTCTTCCCATTCAAGTTGCTAGTACTGATAAGTTACCAAAAATGGTGTGTGAAGAGTGTGTGTACAAGTTGGATGCCTTGTTTGAGTTCCGGGAGAGGAGTTTGAAAACAGAGTATGCCCTTCACAACATGTTAAAAACTGTTTATATCCCAGGGTGCAGTGAGTCGCTTGGCATATCTATGGACTCATTCTGTACTGCACCGGAGCACGAAGAAAATCTCCACACAGAAGCTCCTGAGGTTGAAATTAATTTGGATGGAAATTCTGAGCAGCTGGAGGCAATCATCAATCTACCTTTAAACCATCatcaaaatagaaatttaataaaatgtgaACCAGAAATTGTAATTAAACACGATGGGACTCAGCATGTGAATAGTAATAATATTCGGCCTCCTAGTGAAGGAGACTCTGAAGAATCACTTCCTGTAGAAGCTGATCATAATGAAGCCTGCAATTTACCTGAAGGATTGAACAGCAACATACAAATACAAGAAATTAGGACCTTACAAAGTATAACGGATGAGACTGGGAAAGCAAATGAAGTACAAACATCTGGAAGCTATATTGTGGCAGCACAACCGGATCCGCAACCTGCCCCACCGCCTCAGCAGCAGCCATGGTACTATTGTAACATATGTGGAAAACCATTCAACAGTAGCGAAGAGTTTCAAGCACATTGTGAGATTCATTGGGAAAAGTGTAATGAATGTGGTATTTCATGTGCGAATGAAGAAACATTGGTTGCTCACATGAGAGAAGCTCATCAGTTTGAATCTAGGGACTCTTTAATTGCTGATAGTGGagttaagaaaaaaacagatgtGAAAAGAGAGGCTAAAGTCGAAATGAAAGCTTGTCCTGAGTGCAACAAAGAATATAAGACCAATTACAAATTGGCTGAGCATATGAGAAAGCATACTGGAGAAAAACCATTTAAATGTTCAATGTGTGAAAAGGCCTTTAGGTCTAAAATTGGGTTGGCTCAGCATGAAGCTAAGCACACTGGTcattacgattataattgtgTCACTTGTGGAAAAGGTTTTCAGTGTAAATCGTATCTGATTGTCCACCAAAGGGTACATAGTGATCTGAAGCCATATCCTTGTGATACTTGTGGCAGGAATTTTAAGACAAAGCAAAGCCTTCTTGATCATCAGAACAGACATTTGGGAGTTAAGCCATATCTGTGTGAAACTTGTGGTCGTGGATTTATTACTAAAGGACTCTGTAAATCACATCAAAAGGTTCATTCTGGTTTGGACAATCGTCAGTATCCTTGTTCtgtttgtaataaattatttgttagcAAATCATATTTGGCCACTCATCTAAGAATACACACTGGGGAGAAGCCTTTCATGTGTGAAGTATGTGGAAAAGGTTTCTTGACTAGAGTTGATCTTCGAATCCATTCTACTATGCACACTGGAGAGAAAAGTTTTGTCTGTGAGATGTGTGGAAAGGCATTTGCCAGACGTGATGCTCTTCGATGTCACAAGCGCAGCCATACAGgtgaGAGGCCTTATAAATGTGATATTTGTGGCCAAGGTTTTACTCAGTTTTCTCCAATGGCTATCCACAAGAGGTTACACACTGGAGAAAGGCCTTATTCTTGTGATATATGCCTTAAAGGATTTGTATCTCGATCTACGATGATGTCACACAGGAAGAAACACACCACCTGA
- Protein Sequence
- MATVNLQLAEFSDLCRLCGSKTSVLMGLHIFEREGDLRQIYKKIKACLPIQVASTDKLPKMVCEECVYKLDALFEFRERSLKTEYALHNMLKTVYIPGCSESLGISMDSFCTAPEHEENLHTEAPEVEINLDGNSEQLEAIINLPLNHHQNRNLIKCEPEIVIKHDGTQHVNSNNIRPPSEGDSEESLPVEADHNEACNLPEGLNSNIQIQEIRTLQSITDETGKANEVQTSGSYIVAAQPDPQPAPPPQQQPWYYCNICGKPFNSSEEFQAHCEIHWEKCNECGISCANEETLVAHMREAHQFESRDSLIADSGVKKKTDVKREAKVEMKACPECNKEYKTNYKLAEHMRKHTGEKPFKCSMCEKAFRSKIGLAQHEAKHTGHYDYNCVTCGKGFQCKSYLIVHQRVHSDLKPYPCDTCGRNFKTKQSLLDHQNRHLGVKPYLCETCGRGFITKGLCKSHQKVHSGLDNRQYPCSVCNKLFVSKSYLATHLRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSFVCEMCGKAFARRDALRCHKRSHTGERPYKCDICGQGFTQFSPMAIHKRLHTGERPYSCDICLKGFVSRSTMMSHRKKHTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309636;
- 90% Identity
- -
- 80% Identity
- -