Gacu018414.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010000936.1:416577-436452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0045 0.93 11.9 2.8 1 22 185 206 185 206 0.96 2 12 3.3e-07 6.9e-05 24.9 0.4 1 23 303 325 303 325 0.99 3 12 1.7e-06 0.00035 22.7 1.1 1 23 331 353 331 353 0.98 4 12 4e-05 0.0083 18.3 0.3 1 23 359 381 359 381 0.98 5 12 9.2e-08 1.9e-05 26.6 0.6 1 23 387 409 387 409 0.96 6 12 0.00012 0.026 16.8 0.5 1 23 415 437 415 437 0.98 7 12 0.00037 0.077 15.3 1.1 1 23 443 465 443 465 0.95 8 12 0.00011 0.022 17.0 2.3 2 23 472 493 471 493 0.96 9 12 1.4e-06 0.00029 22.9 0.2 1 23 499 521 499 521 0.98 10 12 1.1e-06 0.00022 23.3 1.3 1 23 527 549 527 549 0.99 11 12 1.9e-06 0.0004 22.5 0.0 1 23 555 577 555 577 0.98 12 12 0.06 12 8.3 0.3 1 17 583 599 583 600 0.87
Sequence Information
- Coding Sequence
- ATGTTCTCTTCCACAAATGCATTTGATTCTTGTGCAGGAATCTTCATGCACAAGAATCACAGGCCTATGGGTGCACAGACAGCCGCACAAATCACAGATAAGCGGTGGTGGAATATAAATTCGGACGGAGCCAGAAAGGTAATCAACATAAATTCTTTCTGGAAAGTGTGGAGTGTCAAATGGATAGGAGAGAGGATTGTTGACATCAAGAAAGAGCCAGAGGATTATATCCCATCCGAAATTGGAGTGTTTGAAGGTCATGGATTCAAAGAAGATCTAAATGGAACTCCGTTCAAACAGGAGGCGGATTTGCATGAAGACTGTCTACTTGAACCTATAAAACAGGAGAAAGATTGGACAGAAGAGAGTCTTCCTTCAACTTCAGGAATAGGAGAGAGGATCGTCGACACCAAGAAAGAGCCAGAGGATTATGTCCCATCCGAAATTAGAGTGTTTGAAGGAACTGCAAAATGTGACATAAGCTATCCAAATATCAAGAATGAAGCTGAACTGGACATTCCACCTTTCTTGGAAGAAGCAGAAGCTCAGTTGTATACTTGCCACCACTGCCAGATGAGCTTTGGATTGTTCAAGGAGTTGAAACTACATATCCGAAGATGTTATTCCTACATTAGGGCACGAAGGATGCTGATAGGGAATGGTTATACTTCTCAAGATTCAGAATCTATTCACAAATCCCAAGATATAAGCCAAAGTCTACAGGGTGCCATGTTATTCAGTACTGCTAGCTCACAACCTGTGAAAATTTTGGATTtagaaaatttagaatataAAAAGCAATTGTATCATTTGAATTCTAATTTCAACAAATACGAGGGAATACATAATAGAAGGCGGAGTGATGGGTTGAATGAACATAAGAGAAGTCACAGGGGAGCAAAGCTATATACATGTGAGGATTGTGGGAAAATATTTGCTCAGGTTTATGACTTAACTAGACACAAGCGAATTCACAGTGGAGAAAAGCCTTATTCTTGTGAGGATTGTGGTAAAGGATTTGCTCAGATTTCTCACTTGActactcacaaaaaaattcacagTGGAGAAAAGCCTTATTCATGTGAAGAATGTGGGAAAGCCTTTACTTACATTTGGAGCATGAAAGCACACAAGAAAATTCACAGTGGTTTAAAGCCATATTTGTGTGAACTATGTGGAAAAGTATTTACTAGGAATTCCAACTTGAATATACACAAGCGAATTCACAGTGGACATAAGCCTTATACCTGTGAagaatgtgggaaagcatttatgtacatttataacTTTAATTTACACAAGCTAATTCACAGTGGAGAAAAGCCATATATGTGTATAGAGTGTGGGAAAGAATTTAACCGGAGAGATCGCTTAAATGAACATAAGAAAACTCACAGTGAACAAAAGTCATGTAGATGTGACGATTGTGGAAAATTATTTGCCCACATTAGGAGCTTGAATGTACATTTAAGGATTCACAGTGGAGAAAAGCCATACTCATGTAAGGATTGTGGGAAAGCATTTTCCCAAATTGGAAGCTTAAATGTACACTCACGAATTCACAGTGGAGAAATGCCATACACATGTGACCACTGTGGAAAATCATTTGCCTACATTTGGAGCTTGAAAGTACACTTGCGAAGTCACAGTGGAGAAAAGCCATATTCATGTGAGGTTTGTGGGAAAGCATTTGCCCAAATTGGGAGCTTGAATGTACATTTGCGAATTCACAGTGGAGAAAAGCCATACTCATGTAAGGATTGTGGAAAATTATTTGCCTATATTACTAGCTTAAAGCAAGCAAATAGGTCTGTTGGAGAGACTTTTTGTTGGGACGAAAGACTCCGAGACCGTTTTGTGGCTGGTGTTGACCACCTTAAATTTGAAACCGAGGTGAGACAAAGGTCGCTGGATGGGGCCGACGCTGGCAACAAGCCCATATCCTTTCAGCAGATCTTACAGTTAGGATTAGTCTTAGAGAAGTCAGAgagggaaaccgagaaagagaAGGGAACTTTCTCTATTGAGAAGGTTGGTTCATTTTCCAAATCCCCGCCATGCCAGGTCTGCGGGTTTGAAAAGCACAGAGTTGGGAGCTGTCTAGCCGAGAAGTTTGTGTGTAGGCGCTGTTCTAGACGAGGTCATTATGCTCGATGTTGCAAGCGTTCGACCAAAGGAGTGAGAGCTGAGACGACTGGAAGTAGGAGTAGTGGAAGCGAAGATGAGGTGGAGCCCACAGTCGTTAGGGCAATGGAGACAAAAGCACCAAGGGCCACAATCGATGTTAAGCTTGATGGACAGTGGTGCAGAATGGGATTCAGGGGAACGTGTTTCGACAATCAACAGATGTAG
- Protein Sequence
- MFSSTNAFDSCAGIFMHKNHRPMGAQTAAQITDKRWWNINSDGARKVININSFWKVWSVKWIGERIVDIKKEPEDYIPSEIGVFEGHGFKEDLNGTPFKQEADLHEDCLLEPIKQEKDWTEESLPSTSGIGERIVDTKKEPEDYVPSEIRVFEGTAKCDISYPNIKNEAELDIPPFLEEAEAQLYTCHHCQMSFGLFKELKLHIRRCYSYIRARRMLIGNGYTSQDSESIHKSQDISQSLQGAMLFSTASSQPVKILDLENLEYKKQLYHLNSNFNKYEGIHNRRRSDGLNEHKRSHRGAKLYTCEDCGKIFAQVYDLTRHKRIHSGEKPYSCEDCGKGFAQISHLTTHKKIHSGEKPYSCEECGKAFTYIWSMKAHKKIHSGLKPYLCELCGKVFTRNSNLNIHKRIHSGHKPYTCEECGKAFMYIYNFNLHKLIHSGEKPYMCIECGKEFNRRDRLNEHKKTHSEQKSCRCDDCGKLFAHIRSLNVHLRIHSGEKPYSCKDCGKAFSQIGSLNVHSRIHSGEMPYTCDHCGKSFAYIWSLKVHLRSHSGEKPYSCEVCGKAFAQIGSLNVHLRIHSGEKPYSCKDCGKLFAYITSLKQANRSVGETFCWDERLRDRFVAGVDHLKFETEVRQRSLDGADAGNKPISFQQILQLGLVLEKSERETEKEKGTFSIEKVGSFSKSPPCQVCGFEKHRVGSCLAEKFVCRRCSRRGHYARCCKRSTKGVRAETTGSRSSGSEDEVEPTVVRAMETKAPRATIDVKLDGQWCRMGFRGTCFDNQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -