Gacu055705.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010004887.1:20905-28675[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6 4.4e+03 -0.7 0.0 27 44 216 234 214 234 0.90 2 2 4.5e-08 7.8e-05 24.2 0.0 1 38 323 363 323 365 0.93
Sequence Information
- Coding Sequence
- ATGATGTTATCACCAAGTAGACCACTGCCTGAAGGAATGAATCATGATTTCATGAAGGAAAGAAGATGGCTATCAATACTTTCTGGATTTTCGGGCTCGTCTACAGTAGCTTATGGCTTGTACAGGTTTGCTGTTCTATTCACCATACTCTACATGAACGCAATGGCTGCCTGTGCTTGTATCTTCGAACCCAAGAAACAGCTCATCATCAAAGCCACGCATTTCATAGCCTTGGATAAGACACGATGCCTGCTCAACTCCGGAGTATACCGCTATGAGGACGAGGATGAAGACGAAGTGCTCATCAAGATGAGAGAATCGATGCCGATAGAAATACGAAGGAAGTCTAATGCTTTCCTTTCAATGTTCTACCTCGTTGGTTTCATAACTACGACGGTGTTCCCTCTTTCTCAGACACTATTCCTCGATGACAGGAAGGACTACGGTATTATCAACCCTTATCTCCCTCACCTCTTCTATCAGCCATTCAATACAAGGGATCTTAAAGGAACTGTCATCGGCTGGATTATGGGGAATGTCATACTCTTCTTCATGTACACCATCAATTGTACCGTGAATTGGTATTACATCAGCGGAGTGGTGCAGATGAAGGTGCATTTCCGCATCCTCAATTACTCTATCAGCAATATTCCGAGGAGAGCTTTGTACTTGTACTCGAAGAAAGAGAACCTCCCTCTTATGGTGACGCCTGACCAATTACTAGACAACGAGGACTACCAACAATGCTTGTTCCTCAGTGTCAGGTCTAACGTTCAGCATCACCAAGCTCTATTGAGggGAGACTGTTGTACCTTGATCACAGTGTACCTTGGATCATCCTTTAGTTTCTTGACAGGTCCTGCCAGCTACATGCTGGAACTGTACTTAGACAATGTTTACTTAGTAGAGACCAAGCAACAGGTCAGTATGCCACGAAGTAGAAGTGGGAAAAAACGAAATCCTATAGACCCAGAATCTATGAAAAAAGCAGTTGAAGCTGTTACTGGACCTCCAGAGAGGAGGATATCTGTAAGAAAAGCTTGCAGGGTTTTCAATGTAAAATTTGCTACACTTGTACGGCATCTTAATGCTTTCAAAACATCTGGAGAAGAGTGGATGAGGTTATTCTTGAAACGGTATTCCAAGGAAGGTGGTCTAGCCATAAAAAAACCTGAAAAAACGAGCATGTCACGTGCAATTAGTTTCAGTAAATCAAACGTCGGCAGATTTTTTGATAATTTGGAAGATGTCCACAAGCGGTTTGGACCTTTCCCTCCAGAAAGAATTTGGAACCAAGATGAGACCGGCGTGACCACAGTGCAAAATCCTCCAAAAGTTGTTGCACCTAAAGGAGCAAAACAAGTGGGCAATATGACATCAGCAGAGCGTGGGGAGCTTATAACAGTATCTGCTTGTGTCAATGCTTTAGGAAATCACATACCTCCCATGATGGTGTTCCCTAGAGTTAATTTTAAAGATTTCATGTTGAAGGGAGCGCCTCCAGGGACAATTGGCGGAGCTAACCCTTCGGGTTGGTCAAACGAAGAGTTGTATTTGAAATTTatgcaacattttataaaacagactaaaccttcaaaagaagaCCGTGTGTTGCTAATAATTGATAACCATGAATCTCATCTTTCATTGGACACCTTAGAGTTAGCATCTAACAGTGGGGTAGTTATTGTAACGTTCCCACCTCACACTTCTCACAGACTACAACCGCTTGATGTGTCCGTCTATTTTCCGTTCAAAGCGTATTACAATCAAGCAGTCCAGTCTTGGCTTGTCAACAACCCTGGAAAAAGAATTGACATCTATAGTGTTGCAGAATGTGTAGGGCAGGCTTATCCTAGAGCTTTCACCACTACCAATATAACTAGTGGCTTCAAGAAAACAGGAATCTACCCTCTAGATAGAGGTGTCTTCACTGAAGATGATTATTTGCCATCTTATGTAACTGATCGCCCAGGTGAAACAACTTGTTCACAAGCAAGTGTTGCAGGACCGACAACGAGCCAATCGTCACCAGTGAGTCAGAAAGTTATGACCACTATGCCCATTGTAACTCCGGAGCAGATTCAACCATACCCTAAGGCTCCAGCTAGACCAAAAGTAGGCATACAAAAAGGAAGAAAATGTGGGTATTCAAAAATAGCTACAGATACCCCAGAAAAAGATAAAATTCGAGAGAGAAAGAAGTCAAAATCAGAGTCCAAAATCTTAACCTTAAATGCTaagaaaaaacatgaaaataaaagaaagcgTGGCATGAAAAAGTTTGAATTTGACAGTGAATCAGAAAATGAAGATGTGGATTTGGCTTCGGACGATGAAGATGATGCAATAGAATTCATGGAAACAATGAACCAGGAAATCAATGAAATGCAAGAAGAAATCAATTTTGAAAGAGAGACATTTGAAGAGGGGGAATATGTTATGGTACGATTTAGCAAAAAGAATGGGCCACCAGTGCACTACGTAGGGAAAATTATGTCCAAAGATCAACATCATTTTGAATATCAGATTAAATTCTACAAACGAATTGGAAATAGCAACAAATTTGTGAGAGAATCCGAAGAAATATTTGATGTTGTAGCAGAAGATATTGTTGTAAAACTGCCAACTCCAATAGAATTAAGTGGATCGGCAAAAACTGATGGGCAGTTGTGGATCCAAGTAGAATTTTCAAGCTTTAATGttaaatga
- Protein Sequence
- MMLSPSRPLPEGMNHDFMKERRWLSILSGFSGSSTVAYGLYRFAVLFTILYMNAMAACACIFEPKKQLIIKATHFIALDKTRCLLNSGVYRYEDEDEDEVLIKMRESMPIEIRRKSNAFLSMFYLVGFITTTVFPLSQTLFLDDRKDYGIINPYLPHLFYQPFNTRDLKGTVIGWIMGNVILFFMYTINCTVNWYYISGVVQMKVHFRILNYSISNIPRRALYLYSKKENLPLMVTPDQLLDNEDYQQCLFLSVRSNVQHHQALLRGDCCTLITVYLGSSFSFLTGPASYMLELYLDNVYLVETKQQVSMPRSRSGKKRNPIDPESMKKAVEAVTGPPERRISVRKACRVFNVKFATLVRHLNAFKTSGEEWMRLFLKRYSKEGGLAIKKPEKTSMSRAISFSKSNVGRFFDNLEDVHKRFGPFPPERIWNQDETGVTTVQNPPKVVAPKGAKQVGNMTSAERGELITVSACVNALGNHIPPMMVFPRVNFKDFMLKGAPPGTIGGANPSGWSNEELYLKFMQHFIKQTKPSKEDRVLLIIDNHESHLSLDTLELASNSGVVIVTFPPHTSHRLQPLDVSVYFPFKAYYNQAVQSWLVNNPGKRIDIYSVAECVGQAYPRAFTTTNITSGFKKTGIYPLDRGVFTEDDYLPSYVTDRPGETTCSQASVAGPTTSQSSPVSQKVMTTMPIVTPEQIQPYPKAPARPKVGIQKGRKCGYSKIATDTPEKDKIRERKKSKSESKILTLNAKKKHENKRKRGMKKFEFDSESENEDVDLASDDEDDAIEFMETMNQEINEMQEEINFERETFEEGEYVMVRFSKKNGPPVHYVGKIMSKDQHHFEYQIKFYKRIGNSNKFVRESEEIFDVVAEDIVVKLPTPIELSGSAKTDGQLWIQVEFSSFNVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -