Gacu011629.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010000552.1:451370-471617[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-16 2.9e-13 51.1 0.0 2 40 271 310 270 313 0.90 2 4 1.4e-12 2.4e-09 38.6 0.1 1 39 324 362 324 365 0.95 3 4 5.2e-16 8.9e-13 49.6 0.0 2 45 380 424 379 424 0.98 4 4 7.4e-17 1.3e-13 52.3 0.0 2 42 432 473 431 476 0.94
Sequence Information
- Coding Sequence
- ATGCAGTTGCGAAGTAATCAACGCCGGGTTGGAGGCGACGCAGCGCGAAAGTTACGCCTAGAAAAACATGCCAGAGTACAGCGGCACAATATGCAGATTCAGGACCCGAGAGGACCTCTCCGAATCGGCGATACTGTCTTTCGGCGAATCCCGTCCAATCGCACCAAACAAGACACAAGGTACGACCGTCATCGCCTTACAGGAGCACAATCTGGTGACCCTTCGATCACAAGAGCGCCCCTTCAAGCAGATGCTTCTCTGCCTGAAACCCAATTACCATATATAACCCCGATTCCAGACCCAATGGGAGCTACAAATGAAGTCGGTACCTGCACAGAAGAAAATAAAGATATGGTTATGGCTGGTGATGCAGCACTTGTAATGAGTACGCCTCCAGCAGAATTGACTCCACACCAAGTTACATCCCAGGTAGTTGCAGAGGGAGATGAAGGAGAATTAGGAGAACCATCAGCACCATCTGCCACTTTAGTTGGTACTCTCGACTTACCACAAACAGCGACTCATCGAGATATTGGAGttgaTGCAAGTGATCTTGGAGTGAACGTCGAAGATGATGATGATAATGTAAAAATCAAATTTGAAACACTAAGGGCGATTGACCAGAACGACCCGATGGACATGGATCAACATATGCAAGACAggACTGTTGGATCTGTTGGCGAAGATGGCATGCATACAATGATGATTACTCCAGAATTGCTTGGACTCATTCCTTCATCTCAATCGGATTGCAGTGATGGAAGTGgcattggaaaaaataatatgaatggCGGAGGTAAATCTTGGCGGCAAGAAGACATGGATGCAGCTTTAGAAGCCCTTCGAAATGGAACAATGTCTTTGAGCAAAGCTTCTTCTATATATGGAATTCCTTCAACGACACTTTGGCAGCGAGCTCACAGgcttgGTATTGAGACTCCAAAGAAAGATGGCCCATTAAAAACTTGGACAGAGGACAATTTAAATGTTGCTCTCGACGCTTTAAGAACTGGTTCAATATCTGCCAACAAAGCCAGTAAAGCTTATGGAATTCCAAGTAGTACCTTATATAAAATAGCCCGGAGAGAGGGTATACGGCTCGCAGCTCCGTTTAATGCTGCACCTACCTCTTGGGCTCCCGAAGACCTCGAACGAGCTCTTGAGTCTATAAGATCTGGCCAGTCGACGGTACAGAAGGCTGCTGCAGAATTCGGGATACCTTCAGGAACACTATATGGCCGTTGCAAAAGGGAAGGGATTGAATTATCACGAGCAAATCCTACTCCTTGGTCAGAAGCTGCAATGAATCAGGCATTGGATGCTGTCAGAATCGGTCAAATGAGCATAAACCAGGCAGCTATTCATTTCAACCTACCCTATTCGTCATTGTATGGAAGATTCAAACGTGGAAAATACGATGGCAGCAATGGAATCGACGAAGGAGGAGCTGGCGGAGCAGTAGAAGCAAGTACAACTACTGATCCGCCACCTAATGATCTCTTGTCGCCAAACGGCCCTCCTCAACCCCAAATTATGCTCGTGCAATACCAGCAACCGATCCATATGTATCAGCCTACATGA
- Protein Sequence
- MQLRSNQRRVGGDAARKLRLEKHARVQRHNMQIQDPRGPLRIGDTVFRRIPSNRTKQDTRYDRHRLTGAQSGDPSITRAPLQADASLPETQLPYITPIPDPMGATNEVGTCTEENKDMVMAGDAALVMSTPPAELTPHQVTSQVVAEGDEGELGEPSAPSATLVGTLDLPQTATHRDIGVDASDLGVNVEDDDDNVKIKFETLRAIDQNDPMDMDQHMQDRTVGSVGEDGMHTMMITPELLGLIPSSQSDCSDGSGIGKNNMNGGGKSWRQEDMDAALEALRNGTMSLSKASSIYGIPSTTLWQRAHRLGIETPKKDGPLKTWTEDNLNVALDALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWAPEDLERALESIRSGQSTVQKAAAEFGIPSGTLYGRCKREGIELSRANPTPWSEAAMNQALDAVRIGQMSINQAAIHFNLPYSSLYGRFKRGKYDGSNGIDEGGAGGAVEASTTTDPPPNDLLSPNGPPQPQIMLVQYQQPIHMYQPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -