Basic Information

Insect: Goniozus legneri
Gene Symbol: lola_9
Assembly: GCA_003055095.1
Location: NCVS01000496.1:59051-67879[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00074 0.057 13.6 9.2 1 20 10 29 10 30 0.95

2 15 0.005 0.39 11.0 2.3 1 23 39 62 39 62 0.95

3 15 0.00018 0.014 15.5 0.3 1 21 150 170 150 171 0.95

4 15 0.002 0.16 12.2 1.8 1 20 196 215 196 217 0.94

5 15 1.4 1.1e+02 3.3 0.6 3 13 256 266 254 273 0.78

6 15 2 1.5e+02 2.8 0.7 1 14 282 295 282 296 0.88

7 15 0.04 3.1 8.1 1.0 1 21 301 321 301 322 0.95

8 15 0.00031 0.024 14.8 2.9 1 23 330 353 330 353 0.95

9 15 0.016 1.2 9.4 2.3 2 21 471 490 471 491 0.94

10 15 0.026 2 8.7 0.6 1 21 509 529 509 533 0.91

11 15 1.7e-05 0.0013 18.7 1.7 1 21 544 564 544 565 0.95

12 15 5.5 4.2e+02 1.4 0.4 1 20 852 871 852 875 0.69

13 15 1.1 85 3.6 8.2 1 23 882 905 882 905 0.98

14 15 0.012 0.89 9.8 0.4 1 21 951 971 951 972 0.94

15 15 0.24 18 5.7 3.9 2 23 982 1004 981 1004 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00074	0.057	13.6	9.2	1	20	10	29	10	30	0.95
2	15	0.005	0.39	11.0	2.3	1	23	39	62	39	62	0.95
3	15	0.00018	0.014	15.5	0.3	1	21	150	170	150	171	0.95
4	15	0.002	0.16	12.2	1.8	1	20	196	215	196	217	0.94
5	15	1.4	1.1e+02	3.3	0.6	3	13	256	266	254	273	0.78
6	15	2	1.5e+02	2.8	0.7	1	14	282	295	282	296	0.88
7	15	0.04	3.1	8.1	1.0	1	21	301	321	301	322	0.95
8	15	0.00031	0.024	14.8	2.9	1	23	330	353	330	353	0.95
9	15	0.016	1.2	9.4	2.3	2	21	471	490	471	491	0.94
10	15	0.026	2	8.7	0.6	1	21	509	529	509	533	0.91
11	15	1.7e-05	0.0013	18.7	1.7	1	21	544	564	544	565	0.95
12	15	5.5	4.2e+02	1.4	0.4	1	20	852	871	852	875	0.69
13	15	1.1	85	3.6	8.2	1	23	882	905	882	905	0.98
14	15	0.012	0.89	9.8	0.4	1	21	951	971	951	972	0.94
15	15	0.24	18	5.7	3.9	2	23	982	1004	981	1004	0.97

Sequence Information

Coding Sequence: ATGCGTTGTTCAGCGTTCGCATTTAAGCACACATGCTCGACTTGTGGCAAGACGTATAAACACAAGCACCACCTGAAAAGACACCACGATTTCGAATGCGGAGTCGACCCGAAATTCAAGTGCGCTTTCTGTCCGCACCGCACGAGGTACAAGGAGAGCTTGATGAAGCATATATTAGCGAGACATCAGCACTATCTCGAGCAGAATGCCCAGTATACCCAGCTACAGCAGATGTACGAAATTCAGCAcgagcagcagcagcagcagcaataCGATCAGAACATGCAGCACACGCAGAGTCAAGTTTACAgGCGCGGCTACAGCGCGTCAAACTGGACCGTGGCCACGTTACCGTCAACCTCGCGATCGTTGCCTTACACCAGAAGGCTGAGATCGAGATCAACGGTGAACGAGGATTACGGGAGGAGCCTCGGAGTCGGCAGACGTTACGTTTGCTCCAAATGCGATAGGAGTTACACACTGAAAGCCTCGTTGGTGCGTCACCGGCAGGACGAGTGCGAAAGAACCGGCCACACGATCGTCAGACCGGCCCTCGTCAAGGGCGACTCCGGGGGAGGGAAATATCACACCTGCAGCAAGTGCGGCCGCGTTTACGCTTTCTTCACCTCGCTGTGGCGTCACATCCATTACGAGTGCGGTATCGAGCCGAAATTCGCATgtGAGAACGAGACTTTCGTGACGGCTGCTGATTTTCAATGGGAGAAGAACGATGCGACGTTCAGTACGAACGGAGCGGTAGTGAATTGCCTGCAATGTGGTAAGGCTTGCAAGAGGAGGGTATTGTCGATGCACATGAAGTTCGATTGCCGTAAGACGCAACAGTTCACATGTCATGTGTGCCTAGCCAGGTTCACTAAGCGCTATCAATCAAGATATCCTTACTCCTGTCTCAGATGTGGGAGAATTTACAAGGCGAAATGTAATTTAGGACGTCATGAAAGATTAGAGTGCGGTGGAAAGCGCTGGTTCGAATGCGAATACTGCGGACGTAAATTCACCCAGAAGACAAGCAAAGATCGAcacgttaaaaataaacaccCCGAGCAACCGAAGACTGATAATAATCAACATTTGAAAATGCGAAAAACGTCGATAAGGTTTGGCCAGAACTGGTACAACTACTTATTACCTCTGGCGCTCTCTAATGTTCGTATAAAACAGTACGAGCCTGCTAAAGACGATTACGAAGAATCTACGCGAATTAGCGCTCAAGATTATAGCCACTACAGCGAGTCTTCGTCATTGCAAGATATTTTGACACCGATAACACCTCAAGATTTAACAGTGAAAAAATCACACTCGTATTCATCTCGCGACACCTGCTTAGTTACCATTGATAAGCGAGAAAGCACAACCGACTGGAagaaatacaaagaaaagaagaaagcgaGCTGTCATTTGTGTCACAAAAAATTGGCTAACAAAGCAGTCCTGAAACGACATTTGAAAAACTCTTGCGGTCCGCTGAAACCTcccaagaaaaatgaaaacctcGACAAAGAATTCTCATGCGCTAAATGTGTAGTTTCCTACAAAACACTGAATAGTTTAGAGCGTCACTTCAAAGGACCGCGTCACAATATGGACGAAGAAGAATTTCAGCTAAAACACGTGTGCAAATTATGCAAGAAGGGCTTCTCCGAGAAATCTTCCCTCAAGCGGCACATTAAGAATACTTGTCCCGAAATCAGAAGAACCAGAAACAACATGGATAATTCTGGCAACGACGCGAGTACTTTGAACGACGCGGAATATTCTTACACGTCCAGCGGTTGCAGATTTGACATTAGAAACGAGCGATCGACATCCCCCTACGCCAGCGACTCCAGCTATTCGAACAGAAGACCCTCCGTTGAATCCGGGAAGAGCGTTCACAGCGAAACTATTCTACCAGTAACGAAGATAAAAGATATTACGAGCGCTCGccgattcgatattaaaaacgAACAATCGACATCCTTTTATCCTGGCGACTCGAGTTATTCCAACAGAAGATCTTCCGTTGAGTCTAGAAAGAGCATTTatgacgaaacgaaaatgaaagataatattttgaacCGACGTGCCTTTAAAGATGAAAAGACCACCAGTGAAGTCACTCAGGATGACAACATGAGAGCAAACGATGTTTCTCGATCTTCGAGTAAAGAGATGTGTGAAGAAGTACTAATCCGTGGGCAGGCTGAGtttattgaaaacaaaagCGATGTGAAGAAACCGAAGATGGAAGATGACGTTTTAAACCGATGTGCCTTTCAAGATGAGAAGACCACCAATGAAGCTACACAGGATCACAACGTAAAATCGAACAATAACTTCTCTAGATCTTCGAGTAATGAGACGTTAGATGAAAAAGTGCTAGTTCGTAAACAAGCTAAACCGACTCAAAATAGCGATAAGACGAAAATCTATGATTGGTCGGGGAATTTGCAAGTATCTAAGCCCTATCTCACAGTGATACCGTCTGCTAGCTTGATCACGAGGCGGAAAATTTCGCCGGAGGACGAAGCCATGAAACGTTTCGGTACACCCTACGCTTGCCCATACTGTTCATACAGGAGTCTCTACAAGGCCAACAAAGATCGTCACGTGAGCAATGTGCATAAGATTGGCCAACTGAAGCATCGTTGCACACTTTGCAATTTTCGCAGCAATTATCTTTTCTGCGTGAGACGTCACATGCGAACATTCCACAACATTCCTACCGATCAATTGCCTACCATTTCGAATTCGTACGATAGCCCTGCTGCTTGGCCATTCGAGACGGTTTACGTGGACGAAAACCCAGATCAGATAAGGAATCAGGTATCGGGAGTACGTAATCAGGAGTACGTGTGTTACGACTGCGGCAAGTCCTACTTGGCCCAGAGATCGCTCTGGCGGCATCGTAAATTCGAATGCGTCAATGCCAAACCGAAAATCAAATGCGAGGTTTGTCCGTATAGGAGCCCGCACAAATGGTGCATGGAGAATCACAAGAGGAGAAAGCACCGCATGGATACTTATAGGGGAACGGACACTCGAAAAATCACGAGACGAAggagataa
Protein Sequence: MRCSAFAFKHTCSTCGKTYKHKHHLKRHHDFECGVDPKFKCAFCPHRTRYKESLMKHILARHQHYLEQNAQYTQLQQMYEIQHEQQQQQQYDQNMQHTQSQVYRRGYSASNWTVATLPSTSRSLPYTRRLRSRSTVNEDYGRSLGVGRRYVCSKCDRSYTLKASLVRHRQDECERTGHTIVRPALVKGDSGGGKYHTCSKCGRVYAFFTSLWRHIHYECGIEPKFACENETFVTAADFQWEKNDATFSTNGAVVNCLQCGKACKRRVLSMHMKFDCRKTQQFTCHVCLARFTKRYQSRYPYSCLRCGRIYKAKCNLGRHERLECGGKRWFECEYCGRKFTQKTSKDRHVKNKHPEQPKTDNNQHLKMRKTSIRFGQNWYNYLLPLALSNVRIKQYEPAKDDYEESTRISAQDYSHYSESSSLQDILTPITPQDLTVKKSHSYSSRDTCLVTIDKRESTTDWKKYKEKKKASCHLCHKKLANKAVLKRHLKNSCGPLKPPKKNENLDKEFSCAKCVVSYKTLNSLERHFKGPRHNMDEEEFQLKHVCKLCKKGFSEKSSLKRHIKNTCPEIRRTRNNMDNSGNDASTLNDAEYSYTSSGCRFDIRNERSTSPYASDSSYSNRRPSVESGKSVHSETILPVTKIKDITSARRFDIKNEQSTSFYPGDSSYSNRRSSVESRKSIYDETKMKDNILNRRAFKDEKTTSEVTQDDNMRANDVSRSSSKEMCEEVLIRGQAEFIENKSDVKKPKMEDDVLNRCAFQDEKTTNEATQDHNVKSNNNFSRSSSNETLDEKVLVRKQAKPTQNSDKTKIYDWSGNLQVSKPYLTVIPSASLITRRKISPEDEAMKRFGTPYACPYCSYRSLYKANKDRHVSNVHKIGQLKHRCTLCNFRSNYLFCVRRHMRTFHNIPTDQLPTISNSYDSPAAWPFETVYVDENPDQIRNQVSGVRNQEYVCYDCGKSYLAQRSLWRHRKFECVNAKPKIKCEVCPYRSPHKWCMENHKRRKHRMDTYRGTDTRKITRRRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -