Basic Information

Insect: Goniozus legneri
Gene Symbol: RREB1
Assembly: GCA_003055095.1
Location: NCVS01000543.1:176248-185742[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00081 0.062 13.5 0.2 1 23 79 101 79 101 0.98

2 15 5e-06 0.00039 20.4 2.8 1 23 107 130 107 130 0.98

3 15 0.14 10 6.5 0.1 3 23 251 273 249 273 0.91

4 15 4.5 3.5e+02 1.7 1.4 2 23 279 301 278 301 0.93

5 15 0.34 26 5.2 0.7 1 19 353 371 353 373 0.90

6 15 0.0057 0.44 10.8 0.2 1 23 501 523 501 523 0.97

7 15 0.0065 0.5 10.6 0.2 1 23 532 554 532 554 0.97

8 15 0.0058 0.45 10.8 2.1 1 23 560 583 560 583 0.97

9 15 0.00036 0.027 14.6 3.0 1 23 999 1022 999 1022 0.97

10 15 0.00033 0.026 14.7 0.1 3 23 1267 1287 1265 1287 0.97

11 15 0.07 5.4 7.4 6.1 1 23 1293 1316 1293 1316 0.97

12 15 0.009 0.69 10.2 1.0 1 23 1400 1424 1400 1424 0.97

13 15 5.5 4.2e+02 1.4 2.7 1 23 1485 1507 1485 1508 0.94

14 15 0.0018 0.14 12.4 0.3 2 23 1561 1582 1560 1582 0.96

15 15 0.00039 0.03 14.4 5.2 1 23 1588 1610 1588 1610 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00081	0.062	13.5	0.2	1	23	79	101	79	101	0.98
2	15	5e-06	0.00039	20.4	2.8	1	23	107	130	107	130	0.98
3	15	0.14	10	6.5	0.1	3	23	251	273	249	273	0.91
4	15	4.5	3.5e+02	1.7	1.4	2	23	279	301	278	301	0.93
5	15	0.34	26	5.2	0.7	1	19	353	371	353	373	0.90
6	15	0.0057	0.44	10.8	0.2	1	23	501	523	501	523	0.97
7	15	0.0065	0.5	10.6	0.2	1	23	532	554	532	554	0.97
8	15	0.0058	0.45	10.8	2.1	1	23	560	583	560	583	0.97
9	15	0.00036	0.027	14.6	3.0	1	23	999	1022	999	1022	0.97
10	15	0.00033	0.026	14.7	0.1	3	23	1267	1287	1265	1287	0.97
11	15	0.07	5.4	7.4	6.1	1	23	1293	1316	1293	1316	0.97
12	15	0.009	0.69	10.2	1.0	1	23	1400	1424	1400	1424	0.97
13	15	5.5	4.2e+02	1.4	2.7	1	23	1485	1507	1485	1508	0.94
14	15	0.0018	0.14	12.4	0.3	2	23	1561	1582	1560	1582	0.96
15	15	0.00039	0.03	14.4	5.2	1	23	1588	1610	1588	1610	0.98

Sequence Information

Coding Sequence: aTGCCGTGCGAGGATAACTCGGAGGGTGGTGGGTCAGAGTTGATACGCGGGGTAGTTGTAGCCGAAAATTCCGAGGAAATAGGAATAAGATCGGAAACAGCATCTCCGTCTACGAGTatcgagtcgagcgagacgTCCTTACTCTGTCCATGCTGTCCAAAAGTACTGCTGACAACCCGAGAGCTGTCGATACACTTGCGCGAGCACAATTCTGAGAACACgacggaaattaattttcaatgcgCCGTGTGTAAGAGGATCCTGAGCTCGAACAGTTCGTTGGATCGACACGTGTTGGTGCACTCGAAGGAACGACCATTCCGGTGCCGAAAATGCAATATGACTTTCACCACAAATGGTAATATGAACAGGCACATCAGATCGACCCACTCGACGCCGAAGTCGGGCAAGCAAGAGATGTCGAACACGAACACCTCCGAGGAGGCAATCTCGAACAACAGCACCAGCAGCAACGACAGCTACGCTAGCGCCAGCACCGAGCACAGCGGCATCTCGAATCGCAACGTTCGCAAGAAGAACGAACGGAACAACAACGTTTTGAAATGCGGATCCCCGGATCTGTCCGACGCCTCGACGTCGTCGGGGAAGAGCAACGAGGATGACAAAATGAGCAGGAAGCGCACCAAGAGCGAGGGCTCGGCCGAGTATTACGAGCCCGCCAAGAAACCAAAGATTATCCAAAACAGTAgcttcgatttttccgatCTTAAGAGCAACATGTTCACCGCCTGCCACGTCTGCGGCAAGAGCGACTTCGCCACTTCGGCGTTGCTCTATGCGCACCTGGACACCGCGCACCCGGACGTCTCCACCAAGTGCGGAGAGTGCCGGGACGATTTCACCAACCACCGAGTCCTCAATCTACATCGTTACATGGCCCACAAGAGGAAGCATAACCCGCCGGACAAGAATCACCCTATAGTCGGTTTCAATGATCTTACCTTCACTGATTTCTCGTCAGGTAAATTTCCAACTATTGCGCGGGCTGTCTGCGAGCGTTCGATGCATAAACCGGCCAGTAACGAGCCTGCGAAGTTTCAATGTTCTAAGTGCCAAAGGGGATTCCCGTGTCGCTCGGCATTGGATGCGCATGAACTCGACTGCGGGAACATCGTCGATCGCGACAAGCTAAacgattatcgaaaatcaaCCAGGGGAACTTTTTTTGCAGGATTGAATCTcaaagaaacgaaagagacGAAGGATCTGGCCGACATATCGTCGATCCTGTCGTCCGTAACGTCCGGCCTGCAGACTTTTTTGAGAAGTAACGCGAGCACGCCCGACGCGCAGACCTCCCCCGAGGACAATCCGGCCCCAGAAGCTCTGTGGGCTCGAGAATCCTGCGAGAACACGAGCGCGGCTAACTCGACCACGTCGACGCCCCCGACGATTCAAACGCCCACGGCGAGCGAGACTCACGAGGAAGAGCAAGATCCTATGAGCTCCGAGtttagaaaaatgaagatgaaGGGCGAATTCCCTTGTAGACTTTGTCCGGTGGTTTTTCCAAACTTGAGGGCGCTCAAAGGTCACCACAGAGCCCATCTGGGCGAGCTAGCCAGTATGCCCTTCCCCTGCAACATGTGCATCTTCGTTGGAACCGATAAAGCAGCTCTGACCAAACATCTGAGAACTCACAACGGGGATCGCCCCTACGAATGCGCGATATGCAGATTCGCGTTCACGACGAAAGCAAACTGCGAGCGACACGTTCGTAACAGACACGGTGTTGCCGATCGCGACGAAGTGAAGAAGTCGATGATTTACCATCCTTGCGAGGATCCAAACTACACCCCCATAAATCCAAAGAAAGAAGATAGAAAATCGTTCAATCTTCCGTCCGATCGATCGGACTTGTCCATGCAACTTCTCCACTCTCAGAATTCTCAGAGCGACAGACAGTCGCCTGCTCTCGCCACTTATCCTTACGTTAACTCAGAAATCAAAGGAGAGATTCGAGTGATCGACGAGGCTCGTTTGCTGAACGACGCTCCGGAGAAAATGGAAGATTCGGAAGACGCGTCGATGAACAACGAAGGTACGAATTCGGGGGAAGGCTATGCCCCGCGTGATCTATCAGTCAGGGTGGAGCGCGCGAGGGCGGAAAACTTACTCGGATTCCCTGGACCCAGAGCAACGTCATCTCCGTTGGGTGTGAACGCCAACTCCCGCGGTAGCCCCATCAATTTGGCGAAAAGCtccgagaacgagcgagaggactCGCCGAGACCGGAAGAGGCGGAAAATACTGCCGAGCCAATCGCGAACGAGGAGGCACCTCTGGATTTGACGATCGACGTTCTGGACTTGAGCCGCAAGATGAACGACAATGACGAAGCGAATTCGAGGAGCAAGCCCGTTTCGAGGAGCAACGACGACAGTCGCTCTCAGAACAACGTCACCGTCTCGACCAGCAACTCCGAGAGTGCACCGTCGATCGAAGATTTAAACGGCACGGagcagagaaatttttacaacgcAGCAACGAGCCAGCTCTTGTTGACGCAAGCTTTACTGAAAGCCGGCCAGACCGGCGGACGTCAGCCGATGTCTCTGGAAGCTCTGTACGCGAACACGCAGATGTTCTACCAAAATTTGAACAGTATAACCGCTGGTGTCGGCATGATCAATCCTCTGTACTTCCCGACGATGTTATCGCAGCAGTTGGCCCTGAAGGACAACTTCCAGAAGGAGCTGGTGAGGGGCTTGCAGCTCACGAGCGGCGGCGGAATGGTGGAGCCCTCGGTGAGCAGTCTGGGGTTTCCAGCGTTCCCTCACAACCGCGAGACGACCCCCTCGAGTCAGCCTACGAACGGACAGAGCGATCCGAAGAAGGCCTCCCCTCTGAAGAAGATGAAGAGGTCTCTCAGCCCGAAAGCGAAAGGGCCGGACTCGTCCGTGAAGATGGTGATCAAGAACGGAATTTTGATCCCCAAGCAGAAGCAGCGTAGGTATAGAACCGAGCGGCCGTTCACGTGCGAGCACTGCTCCGCGCGTTTCACGCTCAGGAGTAACATGGAGCGCCACATCAAGCAGCAACACCCAGAATTTTGGAGCCAGAGGCCTCGGGGTGGCAACTCCAACCGAGGACGTCCACCGGTCAACAATTCGTCGCTGATGCCGAATTTCGGCGAGCACGTGCTGAATTACCCGATGATAGCTAGCAGACTGGAACAGTCGATCGGCCAGAAGGATTACAAAACGAATACGATTTCAGAAGAGGTCAAGTACGCGATCCTGGCCCAGCAACTGAAATCGAACAGAACGGAGGAGAACGACTCGGACGACGAGCTCGTCATCGACGAGGGTCGTACGGAGACGCAGGAGATAATGGAAAGATTGACGCGTAACTCGAGCTTGCTCAGAGGGCAGCTGGAGGGCAACGACAATTCGGAGCACCGGAGTGTCAAAGAAAACAGCAGTCCgcagaggagaaaaaaggaggaggacgaTGAGGAGGGTAAGGAAGACGGCGCGGAACGCGTACACGTGAAACGTGAAAAATCGGAGGACAACGAAGCCAAAGAGGAAGTCCACGACTTGGCGAGTGTGTCGGAATTGCTGGACAACGCTTCCCAGCAATATCAGCTGACTCCTCAGTATTTGAGCGACGAGGAGGGTCTCGTGGCTTCCAACAGCGACGGCAACAATTCCGGGAGCGAGGAGAAGTCCGATTCTGCAGAATCTGTGGGTTCCAGCAACTCGATGAGACACAAGAAGataatgaagaagaagaagaaatcaGCGTACTCGCTGGCGCCCAACAGAGTCATCTGTCCGTACTGCAAGCGTCCCTTCCCGTGGACGTCTTCGCTGAGGCGTCACATCCTGACGCACACAGGACAGAAGCCGTACCAGTGCCCGCACTGCCGGCTGCTCTTCACGACAAAGTCCAACTGCGACAGGCACTTGTTACGCAAACACAAAGACAAGGCTAAATGCCCGTCGACGTTGGAGGAAATTCCGAATCCAGCCGCTGGAAACTTCCCAGTGCCCTCTGGCACGTCCGCGATAGCGAAAATATCCTCGGACGAAGTGGCCACTGCAGTGGCAGCTGCCAACGTCTTCGCCGCGTCCATGACAAACTCGTCGCCAGCAACGGCTACTTTAGGAAACAGCTCAGCTGTGTCGAGCTCCAGCAACTTCACTATGCGAAACGTCCCCGAGCGTCCCTACAAGTGCAACTTGTGTCCCAGCTCGACTTTCTCCACAATCGGCAACCTCAGGAAGCACCGAGCGACTAAGCATGGCGTTGTGAAAAAATCAGCCAAGTCTAGTCGCCCCGGCAGCCCGGACCAGTCGATCGACAGTTCGAAGAACAACGAAAACAGCGATCACGAGAGCCAGTCGTCCGGTGCGTCCGACAACGCTGACATCCAGAAGAAGAGACCCTCGCCGAGGTCTTCTCCCGGGCCGAACGAGGTACCCTTCAAGTGCTACTTGTGCGATAGCGGGTTCGCAGAGAGGCAGGACTGTCTCGATCACATCCGAGAACACCACGAGGAATCTTATGAAATGTTAGTGGCGAAAGGCGCTTTCGATATGGAAGTAGACGGAGCGGAGGATCAGTCACCTCAGCAAACCGCTTCCAATATTCACGACGGGGATGCCGAGGACAAGAAGGGCCGGTTTCCTGATTACAGCAACAGAAAGGTTGTTTGCGCATTTTGCTTGCGTCGATTTTGGTCGGCCGAAGACCTGAGGCGTCACATGCGCACCCACACGGGCGAAAGGCCCTTCACCTGTGACATTTGCGACAGAAGATTCACTCTGAAACACAGCATGCTTCGCCATCGCAAAAAACACGGATCCGTCGACTCCCCAGCGCACAACGGCGCGATGAGCGGCGACGAGGAATCTCTGGCCCATCAGCCAACAATTACGCCACGCAGTCAGCAACAGACGCCAAATCTGATCAACAGCGCCCTTCTGAGAGAGAGGATCTCCCTACCCGATGTAGCATCGATCGCTACAGGTGACGCTGCTCCGAGCGGCTTGAGATTCACCAATCCCTACGACAAATTTTCGAGCCTGACCGGTCAGCTGGCCAGCTCGATGCACGCTGCCGATCAGGGCGAGAACACGGAGAACGATCTCATTTCGAATCTACTCGGAATCCGAGATAAGAGTATAATCGACAAAATGCTGCAAGCATCTGCGGACGATGCTGCGAAATTGCTGGGCGTGAAGAACAGCAACATCGAATAG
Protein Sequence: MPCEDNSEGGGSELIRGVVVAENSEEIGIRSETASPSTSIESSETSLLCPCCPKVLLTTRELSIHLREHNSENTTEINFQCAVCKRILSSNSSLDRHVLVHSKERPFRCRKCNMTFTTNGNMNRHIRSTHSTPKSGKQEMSNTNTSEEAISNNSTSSNDSYASASTEHSGISNRNVRKKNERNNNVLKCGSPDLSDASTSSGKSNEDDKMSRKRTKSEGSAEYYEPAKKPKIIQNSSFDFSDLKSNMFTACHVCGKSDFATSALLYAHLDTAHPDVSTKCGECRDDFTNHRVLNLHRYMAHKRKHNPPDKNHPIVGFNDLTFTDFSSGKFPTIARAVCERSMHKPASNEPAKFQCSKCQRGFPCRSALDAHELDCGNIVDRDKLNDYRKSTRGTFFAGLNLKETKETKDLADISSILSSVTSGLQTFLRSNASTPDAQTSPEDNPAPEALWARESCENTSAANSTTSTPPTIQTPTASETHEEEQDPMSSEFRKMKMKGEFPCRLCPVVFPNLRALKGHHRAHLGELASMPFPCNMCIFVGTDKAALTKHLRTHNGDRPYECAICRFAFTTKANCERHVRNRHGVADRDEVKKSMIYHPCEDPNYTPINPKKEDRKSFNLPSDRSDLSMQLLHSQNSQSDRQSPALATYPYVNSEIKGEIRVIDEARLLNDAPEKMEDSEDASMNNEGTNSGEGYAPRDLSVRVERARAENLLGFPGPRATSSPLGVNANSRGSPINLAKSSENEREDSPRPEEAENTAEPIANEEAPLDLTIDVLDLSRKMNDNDEANSRSKPVSRSNDDSRSQNNVTVSTSNSESAPSIEDLNGTEQRNFYNAATSQLLLTQALLKAGQTGGRQPMSLEALYANTQMFYQNLNSITAGVGMINPLYFPTMLSQQLALKDNFQKELVRGLQLTSGGGMVEPSVSSLGFPAFPHNRETTPSSQPTNGQSDPKKASPLKKMKRSLSPKAKGPDSSVKMVIKNGILIPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPEFWSQRPRGGNSNRGRPPVNNSSLMPNFGEHVLNYPMIASRLEQSIGQKDYKTNTISEEVKYAILAQQLKSNRTEENDSDDELVIDEGRTETQEIMERLTRNSSLLRGQLEGNDNSEHRSVKENSSPQRRKKEEDDEEGKEDGAERVHVKREKSEDNEAKEEVHDLASVSELLDNASQQYQLTPQYLSDEEGLVASNSDGNNSGSEEKSDSAESVGSSNSMRHKKIMKKKKKSAYSLAPNRVICPYCKRPFPWTSSLRRHILTHTGQKPYQCPHCRLLFTTKSNCDRHLLRKHKDKAKCPSTLEEIPNPAAGNFPVPSGTSAIAKISSDEVATAVAAANVFAASMTNSSPATATLGNSSAVSSSSNFTMRNVPERPYKCNLCPSSTFSTIGNLRKHRATKHGVVKKSAKSSRPGSPDQSIDSSKNNENSDHESQSSGASDNADIQKKRPSPRSSPGPNEVPFKCYLCDSGFAERQDCLDHIREHHEESYEMLVAKGAFDMEVDGAEDQSPQQTASNIHDGDAEDKKGRFPDYSNRKVVCAFCLRRFWSAEDLRRHMRTHTGERPFTCDICDRRFTLKHSMLRHRKKHGSVDSPAHNGAMSGDEESLAHQPTITPRSQQQTPNLINSALLRERISLPDVASIATGDAAPSGLRFTNPYDKFSSLTGQLASSMHAADQGENTENDLISNLLGIRDKSIIDKMLQASADDAAKLLGVKNSNIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -