Gleg012150.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- -
- Assembly
- GCA_003055095.1
- Location
- NCVS01000414.1:63702-67280[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00058 0.045 13.9 3.6 2 23 263 285 262 285 0.96 2 13 4.1e-05 0.0032 17.5 1.6 3 23 387 407 386 407 0.98 3 13 0.001 0.078 13.2 1.2 1 20 411 430 411 432 0.93 4 13 2.7e-05 0.0021 18.1 4.4 1 23 440 462 440 462 0.98 5 13 0.18 13 6.1 1.2 3 20 468 485 467 487 0.86 6 13 4e-05 0.003 17.6 3.2 1 23 491 513 491 513 0.98 7 13 0.009 0.69 10.2 0.9 2 23 535 556 534 556 0.95 8 13 0.003 0.23 11.7 6.0 1 23 561 583 561 583 0.98 9 13 0.00012 0.0088 16.1 0.2 2 23 589 610 588 610 0.96 10 13 0.029 2.3 8.5 9.4 1 23 615 638 615 638 0.96 11 13 0.0032 0.25 11.6 4.9 1 23 644 666 644 666 0.97 12 13 4e-05 0.0031 17.6 2.2 1 23 672 695 672 695 0.95 13 13 0.37 29 5.1 8.1 1 23 700 723 700 723 0.92
Sequence Information
- Coding Sequence
- ATGTTATCTACTAAAGTGGAAAAGACTGATTTATCTTTGCAGTTCAGGACAGCAATCTGCAATATTTGTGGGCAAGATCATGAAACTAATGTTTGTCATTACATATCTGAAATAAACTATGTATCAGATGCACCTGTTAAATCACGAGCTAAACAAACATTACCTAATGGTTTAGAGATAAGGAATTTGTCAGATGGGTCGAGTACAGTTGTAGCTAAAACATGCTTTCCAAAAGGAACAACATTTGGCCCATTAGAGGCAAAAAGACTGCATACTCTAAATCCATCAACTACTTTCCCTTTAAAGATTTTTGGAAATACAGAACTTGATACTTATATTTTGGATTGtaccaatgaaaatatttcaaattggaTGTGTTTCATTAGTTCCGCTTCAAATGCAGAAGAACAAAATCTTATTTGCTATCagGTAGATCAGAACATTCATTATTCTGCCATAAAAGAAATCACTGTTGGTGATGAGTTAAAAGTTTGGTACTCTCCTTATTATGCAAAACAGATGAAAATTTCCTTATTTATACCTGATTTGGTGAATACTTTTACTACATATCCTGAcaacaattttacaaaaaattacaagaataaatcaattaaatatcaagACAAAAATACTATTGAAGAACTTGCTATAAAATTACCAGCACAAAAATTAGGTGCAACAGATAATTTGGAAATTTGGAAATGCAAGCTATGCTGCTCTGAAACAAAAACTGTAGTGGCATATGCAAAACATTTAATGGTACATTATAAATCATTGTTAGGTGTACCttgtaatatatgtaataaaaaattttttaattcttgtGTTTTAAAGAGACATAAAAGAGTGAAGCACAATATTCGCTCACATTcaaatgataatataaaattattgacaGTTGAAAGTAATGGGAATAATATCCAGcctttattaataaatataaatcaatctAAAGCAAAAATATTGGACAGAGTAGAAGTCAAAGCTTCCAATGATAGCGCAAGTTCAAGTCTAGTTAATCATACGTTATCagatgttaattatttattgagaAATAACAAACAACAGAATATGAATTCTTATTTGAACAGTGAGAGTGTCACAGAatcaataaatacaaatatagtggaagataatataataacaaataatgtAGATTGtgatatttgcaaaaaaaaatttgataaactgGATTACTTATATAGACATTTAAGGAAACACAcaggagaatttttttgttcaacttGTTCAAcagttTTTGCCAGGAAAGAAAATCTAATTTCTCATGCATGTAATTTGCAAAATCAAGAACCAAAATATGAATGTTCATTTTGTGAGAAaactttttatgaaaaaaaatatctgaagaGGCACATGACTAAGCATATAgAACCCAATAATTGCAAATGGTGTGGTCATGTATTTACAATGAAATCGGAAAGTATTCTTCATATATGTCAGGCACCAAGATATATGTGTGTTTactgtagaaaaaaatttgtcaacaGAACATATCTCAGTCGACATTTAAAATCTCACAGTAATCCAGAaattatacagaaaaaaaagaaaaaacataaaaagcAAACACCTAAATCgcttatttgtgaaaaatgtggtgatattcttaaaaattctaGTAGTCTCAAACAGCATTTACATTTGcatggtGAAAGATTATTCGAATGTGATATTTGTCATAGGAAATTTCATAGATTTAGTGTATTGAAAGAACATAAAATGACACATTGTGACAATTCAATTACTTGTGATatttgtgataaaaatttgaaaagtaaaaaagctCTCAGTATCCATATGCTTCTTCATAATGATGAAAGATATCACTGTGATGAATGTGGTAGAaacTTTTCCCAGAGATGTAAGTATGTTAAGCATCATAAGCAAAAACATACAGCTGGAATCATTTATGAATGTCCTcactgtttaaaaaaattcaccaagAAATTGTGTTTGGATAAACACATAATACAACATACAGAgccttttgaattttcatgcaaaatttgttcaaaattgtttcgtaAAGTATATCAGCTTAAACGACATATGCAAGCAAATCACAGTGGTATAATTTATAAGTGTCCATTCTGTAAAATGTCAGCTCGCCACAAACATAGTATGAAAAGACACTTTGAACACCAACATAGTGGTCTGAAAGATAAATGGGATATACCTGGATTTGTCGATACACtcactgaaaaatttggaCTATCAGAAGATCATGTTGAACAACatcaactgaaaaatataaattctgaGACAAATCTTGAAACACAGAGTTCCAGAACTGGGAAATCAGTATCAAtATTGGCTGAGAATACTTATCCACATACTTCTAGTACTGAACAAATGACTGTAGATCATGTAAATTTGTCAATACCTGAAACTATACCTCTCAATACTATTGAGTCAAATGTAAATTTAAGTGGAATTATTTTACAAGATGTTcttatttttgatgaaaatgaagGGAGTAGTATGTTTTATATATTAGATAACACTTTGTATCATACTGACTATTTAAAATCAACAGTTGGTTAA
- Protein Sequence
- MLSTKVEKTDLSLQFRTAICNICGQDHETNVCHYISEINYVSDAPVKSRAKQTLPNGLEIRNLSDGSSTVVAKTCFPKGTTFGPLEAKRLHTLNPSTTFPLKIFGNTELDTYILDCTNENISNWMCFISSASNAEEQNLICYQVDQNIHYSAIKEITVGDELKVWYSPYYAKQMKISLFIPDLVNTFTTYPDNNFTKNYKNKSIKYQDKNTIEELAIKLPAQKLGATDNLEIWKCKLCCSETKTVVAYAKHLMVHYKSLLGVPCNICNKKFFNSCVLKRHKRVKHNIRSHSNDNIKLLTVESNGNNIQPLLININQSKAKILDRVEVKASNDSASSSLVNHTLSDVNYLLRNNKQQNMNSYLNSESVTESINTNIVEDNIITNNVDCDICKKKFDKLDYLYRHLRKHTGEFFCSTCSTVFARKENLISHACNLQNQEPKYECSFCEKTFYEKKYLKRHMTKHIEPNNCKWCGHVFTMKSESILHICQAPRYMCVYCRKKFVNRTYLSRHLKSHSNPEIIQKKKKKHKKQTPKSLICEKCGDILKNSSSLKQHLHLHGERLFECDICHRKFHRFSVLKEHKMTHCDNSITCDICDKNLKSKKALSIHMLLHNDERYHCDECGRNFSQRCKYVKHHKQKHTAGIIYECPHCLKKFTKKLCLDKHIIQHTEPFEFSCKICSKLFRKVYQLKRHMQANHSGIIYKCPFCKMSARHKHSMKRHFEHQHSGLKDKWDIPGFVDTLTEKFGLSEDHVEQHQLKNINSETNLETQSSRTGKSVSILAENTYPHTSSTEQMTVDHVNLSIPETIPLNTIESNVNLSGIILQDVLIFDENEGSSMFYILDNTLYHTDYLKSTVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -