Basic Information

Insect: Goniozus legneri
Gene Symbol: -
Assembly: GCA_003055095.1
Location: NCVS01000685.1:819-3754[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.2e-05 0.0017 18.4 7.3 1 23 306 330 306 330 0.97

2 8 1.6e-05 0.0012 18.8 2.2 1 23 337 360 337 360 0.98

3 8 0.00011 0.0084 16.2 0.2 2 21 367 386 366 387 0.91

4 8 1.7e-05 0.0013 18.7 2.5 2 23 397 418 396 418 0.97

5 8 3e-05 0.0023 17.9 0.7 1 23 424 449 424 449 0.98

6 8 0.00041 0.031 14.4 1.9 1 23 453 475 453 475 0.91

7 8 0.0011 0.088 13.0 4.0 1 23 482 507 482 507 0.97

8 8 0.015 1.2 9.4 2.1 3 23 514 535 513 535 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.2e-05	0.0017	18.4	7.3	1	23	306	330	306	330	0.97
2	8	1.6e-05	0.0012	18.8	2.2	1	23	337	360	337	360	0.98
3	8	0.00011	0.0084	16.2	0.2	2	21	367	386	366	387	0.91
4	8	1.7e-05	0.0013	18.7	2.5	2	23	397	418	396	418	0.97
5	8	3e-05	0.0023	17.9	0.7	1	23	424	449	424	449	0.98
6	8	0.00041	0.031	14.4	1.9	1	23	453	475	453	475	0.91
7	8	0.0011	0.088	13.0	4.0	1	23	482	507	482	507	0.97
8	8	0.015	1.2	9.4	2.1	3	23	514	535	513	535	0.95

Sequence Information

Coding Sequence: ATGGGATATATACTTAACCATAATAATGACAAACCGACAAACAAACGACAAAATGACAAAGATGGATATACCGActgtaaacaatttaattgtttacaAAATACACGAAGCCTCTATAaggACAAAATCCGTCAATTATTAGGCATCGGCCAAGATGacgttcaaaaaaatcaacagtttatcaaaattatggATTTATTCGACGAATGGGTAGAAAATCCCGTAGATGATAGCCCAAAACGAGCAatgttgattaatttaatgaatacaTTGATGGAACATAATGTACCAGCAAATGTTTTTCCTGATGGACAAATGAACGAAGAATCACGAGATTTTGTAGACGATCAAGTGAAAAAGTGTATAGAgttcgtaaaattaattaagtcaCAAATGCGCATAGCAAAACTAAAACGGGATCGAATGAAAGTTAAATTTTGTCCAGAAGTAGCAACAAGTGTAGAGAAGAATGAAATAGATTTTACTCCTTTTCAGAAAAGAATGACTGTGATACGgATCTTAGCAAAAAGAATGGAGCAGAACTTGGTAAGCCGAGAGGGAGATTCTGAGAGATCGATTGAATTAGTACATATGtatcaaaaaatgttgaatgaaCTAGATGATGATGTGAGGTTTATAAACTCAGTAGATGATGAACTGGCTACTGATACAACTTCAAAATACACAGAAAAGGGGAATGTCAAGCCGGCTACTGGTATGACCCTAAGATCACAAAGAAAAAACACAGAAAAAGGAAACGTCAAGCAAACTACTGATGTGGTCTCAGAAGACACAGAAAAGGGGTATATTCAACAGGCTGCTGGTATGACCCTGAGATCACGCAAAAAAGATGGCACTGATATTCCTTCGTGTGGTATTCCTTACTATGCAATGATGTGTGACAAAGAGagaCCATTCATATGTAAACATGCAGGATGCAACAAAACGTATACCCGAGCACATCATTTAAAACGACACCAACAAACACATGAAAGTTTTTCAAAGGGATACAGGTGTTCCGAATGCCACTTGGTCATTAGTAAcgaaagtaatttaaaaagacATTACAAGAGAGTtcatggagaaaaaaataaaattgtctgTGAAAAATGCGACAAGAGTTTTCGTAAaagatttcaattaatatatcaTGTAGCTACTGACTGTGAAACAAATCTTATGAGGTTAAAATGTGACAAATgtggtaaaatatttaataatattatacatttaagCCGTCATCAAAAATATCATGAAACTcctaaaaaatatcaatgtaaGGAAAGTGATTgtactgaaatttttgaaaaatggactTCTTTGAGAAGCCATATGAAAATTAGACATGTAAAAGAGTATATATGTGATGATTGTGGCAAATCATTCTCATCTAAACTTAAATTGATACCTCACTGCCGGACTCATTTGGACGACAGACCCAAGTTTACTTGTCCAATGGAAAATTGCGATCGGTTTTACTATTTTCGAAGAAACTTAAATCACCATCTTCGCAATTACCAtcagggagaaaaagagatctGCAATATATGTTCTACGAAATTATGtactaaacaaaaattagtagaACATATGAAAGCTTATCACAAAGCTGTAAGAAATCCAGAAAAATCtaagggaaaagagaaaatcaacaaaattagAAAAGATGCAGGAATTCCAAAGAAAAGTATTGTATCGTGTTTGATAGGATTAAATTTATCTCATGCTGCAGAACAAGCATTGATAAACAGAGAGCCAGAAAAAGCTCAAGAGAagttatatttgtaa
Protein Sequence: MGYILNHNNDKPTNKRQNDKDGYTDCKQFNCLQNTRSLYKDKIRQLLGIGQDDVQKNQQFIKIMDLFDEWVENPVDDSPKRAMLINLMNTLMEHNVPANVFPDGQMNEESRDFVDDQVKKCIEFVKLIKSQMRIAKLKRDRMKVKFCPEVATSVEKNEIDFTPFQKRMTVIRILAKRMEQNLVSREGDSERSIELVHMYQKMLNELDDDVRFINSVDDELATDTTSKYTEKGNVKPATGMTLRSQRKNTEKGNVKQTTDVVSEDTEKGYIQQAAGMTLRSRKKDGTDIPSCGIPYYAMMCDKERPFICKHAGCNKTYTRAHHLKRHQQTHESFSKGYRCSECHLVISNESNLKRHYKRVHGEKNKIVCEKCDKSFRKRFQLIYHVATDCETNLMRLKCDKCGKIFNNIIHLSRHQKYHETPKKYQCKESDCTEIFEKWTSLRSHMKIRHVKEYICDDCGKSFSSKLKLIPHCRTHLDDRPKFTCPMENCDRFYYFRRNLNHHLRNYHQGEKEICNICSTKLCTKQKLVEHMKAYHKAVRNPEKSKGKEKINKIRKDAGIPKKSIVSCLIGLNLSHAAEQALINREPEKAQEKLYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -