Gleg004843.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Goniozus legneri
Gene Symbol
-
Assembly
GCA_003055095.1
Location
NCVS01000100.1:331973-334638[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.7 5.2e+02 1.1 0.7 1 7 112 118 112 120 0.92
2 16 0.3 23 5.4 0.2 2 23 326 347 325 347 0.93
3 16 0.0019 0.14 12.3 0.2 1 23 355 378 355 378 0.92
4 16 0.29 22 5.4 2.5 1 22 384 405 384 408 0.91
5 16 0.07 5.4 7.4 5.3 1 23 491 513 491 513 0.93
6 16 0.0045 0.34 11.1 0.4 1 23 520 543 520 543 0.90
7 16 0.00053 0.041 14.0 3.9 1 23 549 571 549 571 0.97
8 16 0.00015 0.011 15.8 1.8 1 23 577 599 577 599 0.98
9 16 3.8e-06 0.00029 20.8 2.2 1 23 605 627 605 627 0.98
10 16 0.0012 0.092 12.9 0.2 1 23 640 663 640 663 0.95
11 16 0.00047 0.036 14.2 4.4 1 23 679 702 679 702 0.96
12 16 0.0011 0.085 13.0 2.3 1 23 710 733 710 733 0.97
13 16 0.0014 0.11 12.7 0.4 1 23 739 761 739 761 0.96
14 16 0.00027 0.021 14.9 5.0 1 23 767 789 767 789 0.98
15 16 0.00018 0.014 15.5 0.9 1 23 795 818 795 818 0.96
16 16 0.013 0.98 9.7 0.5 2 23 824 845 823 845 0.97

Sequence Information

Coding Sequence
ATGGATGAAACCAAAAATGGATCATGTTTTTTATGTGGACAAATCCAGCATCGAAAAGCACTTCTGCACATTCTTAAAGAATCGGAAGAATTAAagcaaaaaataaaggaaacaTTACCTAATAttATATTACATGATGACAGTAATAAGTACATATGCATCTCTTGTGAAGACAAATTGAcagaatatcaaaaattcatgCAAGAAGTAACAGAACATCAGAAACATTTAGGGAATGCCTCAAATTTATGCAACTATGTTGAACAAACTCAAAATGATTATCTTGAAAAAGTGGAAGAGTTTTGCAGAAATTATAATCATAGTGACACAGTATATAAATGTCCTAATTGTGATGTGGATCTTATGATTCTTGTAGTGAACAATCCGCAAGAAAGTGATTATACTTTCACTATTTCATTAGCAATGGTagatgataatgaaaaaattgatgttgaAGATAAGAAAGATTTTGATAAATCTGAAATCATTATTGATCAGAACGAATTTAACGATAGTTTTGATACTGCTATTGAGAAAGAATCTCTGGATATTGTAAATGACGATGTCAACTTGATAGAACATAAAGTTGACTTATCTACGATCAAATTACAACATgatattgatataaataatggttctatagaaataattaatgaatatgaaaaagaaaattccatagtaaaaattcacaaaaatttgaaaagaaaggcagaaaatgaaatttttgaagaaatcCTTCCAGATCTTAATATGGcaacaaaattacaaattatgtCCTATCAATCTGATTCAGACACTTATAATTATGATTCCAAGTCTactgtaattgaaataaaaacagaagaTGGAACTTTAGAGTTACAAAACAATGAAAGTGATTATAAAGGTGATGAAGATTATGgttcaaataattttgttgatataAATACTGAACAATCAAGAGAAAATGATACTCACAGACCTGGACCACGTATTGTGTGTGAGTTATGTGGTATGCGCTATATAtcacaattaaaatatgaatttcacatGGAAAGACATAAATTGGATGAAATGGATAAATTCATCTGTCCCTTGTGTGGAAAAAGTGCAAGTAATGAGAATTTATTATGGGATCACTATTATTATACACATAAGAGTTCACAACGATATATGTGTTTAACATGTAACAagttgtttttgaaaaaatctagATTGAATAATCATCAAAAATGGCAGAAACATATTGGTTCAAAAGtaattgatattgaaaatgCTGATAGCGATACTCAATTAGATGATAATGTTCAAAAAGCTGTTATAGCAAAAATGCAAGGTTTGGTATCTGTAAATTGTAATCTCtgtggaaaattaattactgaTTTAGATCCTGAAGGTATAAATGATTTAGTTACCTGTTCTGAATGTGATGATTCCACGCTATCTTTAATGGTTGATGGGAATGAAGCAAAAGTTATTTCTCCTCGGCAATATCACTGTTCTAAATGTCCAAAACATTTCGTTCGTAAAGAAAGATTAGAATTTCATGAGATGAGacacaatgaaaatatgaaagaattCATTTGCAGCACCTGTGGTAAAGAATTTAGGGCAGAGAATTCTCTATATGAACACTACATATTTGTTCATAAAGGAGCTAGACCACATATTTGTGAGTTATGCGGTAAATCGTTTCAACTCAAAGCTCGTTTGAAAGAACATCACAGAACTCATACAGGTGAAAGACCATTTCAATGTGACATTTGTGGTCAAAGATGTATGACTAATAATGCTTTGAGATTACatagaaaaatacatttctctcATAATAGATATTCATGCAATATCTGTAATAAAACATTTAGTAAAAAGCAAAATATGAATGAACATTTAGAGAAACACTGGAAAAGTGATAAAAATGTTGTATTGCCACATGTTTTCACTTGTCCAGTCTGTTCAGAAGATTTTCCAACATATCGTATGTTAAAATATCATGTGATGGAAGTGCACAATATAAGTGATCAAGATCCATTATTAGTAAATCAAAAACCTTGGTATGAATGTGCTACATGTCaccaaaaatttaaacatCAAATGTCTTTGAAAGCACATAGAGAACGAGTTCATGAAGGAAAAGTTAATCCTATCTATCACTGTGACACTTGCAATgctacatttaaaattaaacaactCTTAATTAACCACATAAAAAGTAAACACGATGGAGAAAAGAGGTACATGTGTGCTCAGTGTGAAAAAGGATTCAATGACACCAAATCTCTTTATAATCATGTCTTGCTTCATACGGGTAAAAAGCCATATGTTTGTGAATATTGTGGAATGGCATTTCGTAGAAAAGACTCAAGAGATCATCATCATCGGAAACACACTGGTGAACAGCCTTATCAATGTCAAGATTGCGGTGAAACATTTGCAAGCTACAACAGTCGTGCAAAACATCGAAAACAAGAGCATGAGGATAGCAAAACAGTATGTCCAGAATGTGGAGAAAAGTGTAATGGAGAACAAGAAGTTAGAATGCATTTGAATAAACACttaggagaaaaattgaaacagcTTAAATCTGAACATAATTCAGATAATTAA
Protein Sequence
MDETKNGSCFLCGQIQHRKALLHILKESEELKQKIKETLPNIILHDDSNKYICISCEDKLTEYQKFMQEVTEHQKHLGNASNLCNYVEQTQNDYLEKVEEFCRNYNHSDTVYKCPNCDVDLMILVVNNPQESDYTFTISLAMVDDNEKIDVEDKKDFDKSEIIIDQNEFNDSFDTAIEKESLDIVNDDVNLIEHKVDLSTIKLQHDIDINNGSIEIINEYEKENSIVKIHKNLKRKAENEIFEEILPDLNMATKLQIMSYQSDSDTYNYDSKSTVIEIKTEDGTLELQNNESDYKGDEDYGSNNFVDINTEQSRENDTHRPGPRIVCELCGMRYISQLKYEFHMERHKLDEMDKFICPLCGKSASNENLLWDHYYYTHKSSQRYMCLTCNKLFLKKSRLNNHQKWQKHIGSKVIDIENADSDTQLDDNVQKAVIAKMQGLVSVNCNLCGKLITDLDPEGINDLVTCSECDDSTLSLMVDGNEAKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMKEFICSTCGKEFRAENSLYEHYIFVHKGARPHICELCGKSFQLKARLKEHHRTHTGERPFQCDICGQRCMTNNALRLHRKIHFSHNRYSCNICNKTFSKKQNMNEHLEKHWKSDKNVVLPHVFTCPVCSEDFPTYRMLKYHVMEVHNISDQDPLLVNQKPWYECATCHQKFKHQMSLKAHRERVHEGKVNPIYHCDTCNATFKIKQLLINHIKSKHDGEKRYMCAQCEKGFNDTKSLYNHVLLHTGKKPYVCEYCGMAFRRKDSRDHHHRKHTGEQPYQCQDCGETFASYNSRAKHRKQEHEDSKTVCPECGEKCNGEQEVRMHLNKHLGEKLKQLKSEHNSDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-