Gleg007045.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Goniozus legneri
Gene Symbol
-
Assembly
GCA_003055095.1
Location
NCVS01000681.1:423601-426337[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0024 0.19 12.0 0.1 2 23 345 368 344 368 0.95
2 10 0.0044 0.34 11.1 0.8 1 23 374 398 374 398 0.98
3 10 0.00023 0.018 15.2 0.5 1 23 404 428 404 428 0.95
4 10 0.0022 0.17 12.1 3.0 3 23 436 458 436 458 0.95
5 10 0.00097 0.074 13.2 2.4 1 21 465 487 465 489 0.95
6 10 0.00025 0.02 15.0 0.5 2 23 497 520 496 520 0.95
7 10 3.4e-06 0.00026 20.9 1.4 1 23 526 550 526 550 0.98
8 10 7.5e-05 0.0058 16.7 1.8 1 23 556 580 556 580 0.96
9 10 0.00012 0.0095 16.0 4.1 1 23 586 608 586 609 0.95
10 10 0.0001 0.0078 16.3 1.9 1 23 687 712 687 712 0.95

Sequence Information

Coding Sequence
ATGGATCACGACGGTATCAAGTCCGTCGTCGAGGGGGTGAACGTTGACCATTACCTGGAGAATGAACTACGGCATTCGTTTTTGGAAAAGGACCCGCTCTCCATCGACATTGATTTGTCGGACGCAAAACCTAACCTCGCCTACGATCCCATACTTCCAGatttgcaaaatgaaaaactccTCGAAGTTTGTGAGAAAGTCGACGAGTTCATGCTACCAGAGATTCAGTTCGATCATCTCGATCCACTGACACTCCCGGATGATATGTTAGTGGCTGGTGAAATTTTACCAAGTGCTAGTATACAGTCTGTGCTACATGTTCCTAATGACGATGAAGCAAAGTCTATCAAATACGCAGACGAGGCTACTGAATTATTGGACAAGAGCGCAGAGCCTCTGGATAAGTCTACCCAGATTTGTATCGACGATATCCAACCTACTTTGGGAAGTATCGATCAGGATGGTCATAAACGATACAAAGCGCAAATCGAcaatgataatataaaaaatcaaactcaGTTTTATATCGACGAATTAGTGGATAGCAGTGTTGTTCATTCTCTGCATAATGTTCCCATTGACGAATCTGTGGAACGACCAATTttagaaaagttgaaaaagacTAAGAACCGTTTAGAACCTCGTatcataaagaaaaataagaaacgttctgaaaaattgaacgtcgAGTCAAAATGCGtaggagagaaggaagagaattCCAAAGATGGAATTATGGCTGTAGTCGCTATATCTACAGATAAGGTTTCAAATTTAACTCAGATTGTGATTAATAACGGTAAGGAAGAACAAATTTATCAAGGCAAGACTTCGGAGCTAATAGAGGCTACTGGAAATTTTCCTAAACTGCCTAAATTGAACTCTGGTTCTTGGGCTGGTACGGTTGAATACAATGTGGATAGTTGTACGAATAGTCAACACGAATTAATAATAGCCGACGCATTGGAAGAACTTGGCGTTAGCGATGATAATTTACAACCGATATCTATTAACGAATTAGGAAAAGTATGGATGTGTCCGAAAGAAGAATGCGGTAGGCaatttaatagaataaatGCTCTGAAAGGACATTTATTATCTCATTACGGTGTTAAACCATTTAAGTGTGATTACGAAGGATGCGCTTGGGctttttattctgaatttaaattaaaaaggcATAAAGAGACGCATCTTAAACGAAAGGATTTTATCTGCGAAGTGGATGGTTGTAACCGAAGGTTTACAACAGTTTATAATTTATGGAGTCACAAAAAACTCCACACTCGACCTAATAGAATAGGATGTCATGTTCCAGAATGCCACGAAAAGTTTCAAACTAAGAGAGCATTGGAATTGCATATGAAATCTCATGACCAAAGTCATGCACCTTATGTATGTAAACAAGAAGGATGCGGTAAAAGATATTATAGCAGTAATGCTCTAACGTCTCATCAAAGATGCCATAGTTACAAAGAGGTAGATGTTAAGTGTTCCTGGCCTGGCTGTGGTAAGATATTCGACAAACCATGTAGGCTCAAAGCACATTTACGTTCTCATACCGGATGTAAGCCCTACCCTTGCAATTTTCAAGGCTGTCAATGGGCGTTCTCGTCATCTAGTAAATTGAAAAGGCATCAGAAAAAGCACACAAATGACCGGAAATTTGTTTGCGATTTCTCCTCATGCGGCAAGGCTTTTATGCGTTCTGAGCATCTAAAAGAACATAGATTGACGCATGAGGACGACAAATACTTTCACTGTTATATATGTGATGCTAGTTTCTCGGCCAAAAGTAGCCTGTATGTACACATGAAGAAGCATCATATTAAACATATGGAGGTGAACCTACAAGAGTTATCTAATGTGCAAGACCACACTCATGTGCCAGATCCTCACTGTTCTAGGGTGAATCCTATTgtaaaagtaaagaaaaagttCGATACCGAGGTTGCCTCGCAAGTAACTGGTATTTTAAGTGACTCGCTCACCAATGATAGTGATAACAAAAACGAAAGACTAGATTACGCAGTGCTCAATACCAATCAGAAGACGTTTTATCATTGCCCAGTAGAATCATGTAATAAATCTTATAGAACGAAAGCGTCTCTGAATAAACACAcgctgaaaattcacaaaacgACATTCGAAAGTGACGACAAATTACTGGAAAGACTCTCTTCGAATTCGGACTCTAACATGGACTACATTTTGTACACACCTTCGTCTACGATAGATTCTTCGGAGCAAATGATTATGGTGACACCTTGCGACACGGTAATTCTCAGCAATTCGGCTGACACGGATTTACCGGAGCCAGAACCTCCCCCCATGCAGTCCATCTTGAAAGTGACGCAACCTCTGACTCAAAAATATGTCGAAAATGAGATTAAAACCGAGCAAGGATCGGCTAGGACCTGTTTAACTGTTTCAGACATTTGGAGAATGAAATCAAATGGTGCAATACAGGATTCAGTGGCGGGTGCGTCCGATGTTGTACTAGGAATTGGTGACTTGGGAGATGGTTTATTATTATCTGAAGAATTGTGTCCCACGTATTATCAAGACGATGTCGTAGGTGCGGAATACCAAGTGTATTTTCTTGACTCCGAAACGTCTGAAAACACAATCAATCTCATGGGGTCTTGA
Protein Sequence
MDHDGIKSVVEGVNVDHYLENELRHSFLEKDPLSIDIDLSDAKPNLAYDPILPDLQNEKLLEVCEKVDEFMLPEIQFDHLDPLTLPDDMLVAGEILPSASIQSVLHVPNDDEAKSIKYADEATELLDKSAEPLDKSTQICIDDIQPTLGSIDQDGHKRYKAQIDNDNIKNQTQFYIDELVDSSVVHSLHNVPIDESVERPILEKLKKTKNRLEPRIIKKNKKRSEKLNVESKCVGEKEENSKDGIMAVVAISTDKVSNLTQIVINNGKEEQIYQGKTSELIEATGNFPKLPKLNSGSWAGTVEYNVDSCTNSQHELIIADALEELGVSDDNLQPISINELGKVWMCPKEECGRQFNRINALKGHLLSHYGVKPFKCDYEGCAWAFYSEFKLKRHKETHLKRKDFICEVDGCNRRFTTVYNLWSHKKLHTRPNRIGCHVPECHEKFQTKRALELHMKSHDQSHAPYVCKQEGCGKRYYSSNALTSHQRCHSYKEVDVKCSWPGCGKIFDKPCRLKAHLRSHTGCKPYPCNFQGCQWAFSSSSKLKRHQKKHTNDRKFVCDFSSCGKAFMRSEHLKEHRLTHEDDKYFHCYICDASFSAKSSLYVHMKKHHIKHMEVNLQELSNVQDHTHVPDPHCSRVNPIVKVKKKFDTEVASQVTGILSDSLTNDSDNKNERLDYAVLNTNQKTFYHCPVESCNKSYRTKASLNKHTLKIHKTTFESDDKLLERLSSNSDSNMDYILYTPSSTIDSSEQMIMVTPCDTVILSNSADTDLPEPEPPPMQSILKVTQPLTQKYVENEIKTEQGSARTCLTVSDIWRMKSNGAIQDSVAGASDVVLGIGDLGDGLLLSEELCPTYYQDDVVGAEYQVYFLDSETSENTINLMGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-