Basic Information

Insect: Goniozus legneri
Gene Symbol: -
Assembly: GCA_003055095.1
Location: NCVS01000002.1:247486-249522[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00069 0.053 13.7 0.6 1 23 274 297 274 297 0.96

2 10 4.8e-06 0.00037 20.5 0.5 1 23 303 325 303 325 0.99

3 10 2.5e-07 1.9e-05 24.5 0.7 1 23 331 353 331 353 0.99

4 10 0.02 1.5 9.1 1.1 1 23 359 381 359 381 0.98

5 10 4.1e-06 0.00031 20.7 0.2 1 20 387 406 387 407 0.96

6 10 0.012 0.95 9.7 2.4 1 23 416 436 416 436 0.94

7 10 1e-06 7.7e-05 22.6 0.5 3 23 444 464 443 464 0.98

8 10 0.0001 0.0077 16.3 1.4 1 23 470 492 470 492 0.98

9 10 0.00095 0.073 13.2 3.4 1 21 498 518 498 521 0.96

10 10 0.044 3.4 8.0 0.8 1 21 527 547 527 548 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00069	0.053	13.7	0.6	1	23	274	297	274	297	0.96
2	10	4.8e-06	0.00037	20.5	0.5	1	23	303	325	303	325	0.99
3	10	2.5e-07	1.9e-05	24.5	0.7	1	23	331	353	331	353	0.99
4	10	0.02	1.5	9.1	1.1	1	23	359	381	359	381	0.98
5	10	4.1e-06	0.00031	20.7	0.2	1	20	387	406	387	407	0.96
6	10	0.012	0.95	9.7	2.4	1	23	416	436	416	436	0.94
7	10	1e-06	7.7e-05	22.6	0.5	3	23	444	464	443	464	0.98
8	10	0.0001	0.0077	16.3	1.4	1	23	470	492	470	492	0.98
9	10	0.00095	0.073	13.2	3.4	1	21	498	518	498	521	0.96
10	10	0.044	3.4	8.0	0.8	1	21	527	547	527	548	0.94

Sequence Information

Coding Sequence: ATGCAACAGAACGCTCCCAGCGGCATGCCGAGCCTCGAGCAGGAGGAGGGAGTGCAGCTGACCGAGCTCAGGCCGGTCAAACAGTCCGGCATCGGCGAGGTCGGCGAGGGTGTCACGGACGCGTTCAGGGCGCTCAGAAGCATCTCCGAGGATTGTCGGGAGAGCGAGGATTACGAGCTCGGCTCGTTCGATTACGAGAAGAAGAGCCACAAGAGAAAGAATGGAAACACTTCTGGCGATGACGAAGCCgataagaagagaaagaggaacaagaattcgaagaaaattgcgAAGAACGGTGCGAAAAGAAGAACGGATAATACGGATAGCAAGAAAcaatcgaaaaagaagaaagtcgATTCGGTCTTGGTTTACGTGAACGAAGAGGAGCCGATGTATCTTGATCTCGACAAGACGAACGACAGCTTAGGCGATGAGGTGTACGTATTCTATGGCGATCCACCGTCCGATTCTCAACAAAACGATAATCAGGATGAAGAGGACGTTCAGCTGGACGAGAACGAGACTACAGACGGAGTGTTGTTCGCACGCACGAGACACGAAGTTACCAGAGATTCCACCGACGGCGAAAACAATACGAGCGAGAATACCGAGGAGCTCAATATGAAAATAGATGCCATAATACAAGAgaattatcgtcgcgaatGCGAGAATAACAATGTAGTAGAATCCGATGAGAATCAGCTGGACGAGTGTCAAAACGAAGAATCGGAAACTGCGGGTACGAACAAAACACCGGCAAAGAGGAAGAGTAAAGTAGACGAAGGCGGAAAAGAAGAGCAAGGAACCGAGAAGAAGTACTGCTGCGTTGTGTGCGATGCAAAGTTCAAAGGTAGCGGCGGGCTCCGCAATCACTACAAGGTCGCTCATGGTGCCGGTCCGGTCTTCAAGTGCGACGAATGCGGCAAAGAATTTCCACTGAAGGAGCGTCTGAAACTCCATGTGAGGACCCACACCGGGTTCAAACCATACAAGTGCACCGAGTGCGACAAGAGCTTCGCCCGTGGCGGTCAATTGGTGCAACACCGTCGTACTCACAGCCAGGTCAAGCCGTATCGGTGCTCTCTGTGCTCGGGCACCTTCACCTGCGCCGCTAATCTAGCCCTCCACGTTAAACGCCACAACGGCCAGAAGGACCACAAATGCGACATCTGCGGACGCGGTTTCGTACGACGCGACGCCCTCAAGAAACATCTCGAGTGTCTTCATCGAGACGTAAAGTCTTTCCTCTGTGGGATCTGTAACAAAACTTTCAAAGGACATCTACCGCAGCATATGAGGACCCACGCGAGAGATCGTCCTCACGGTTGTGCCACTTGCGGCCAGAGATTCGCCCAGAAATCCCAGCTGACGGTCCACCAGCGGACGCACTCGGGTCAGAGACCATTCAGGTGTCTCGTTTGCTGGCAGGCCTTCGCCCACTCGACTGCCCTCAAGCTCCACACCAGACGACACACCGGAGAACGTCCGTTCAAGTGCACCGAGTGCAACGCCGGCTTCACTCAACTGCCACACTGGAAGAAACATATGAAGTGCATTCACGGGAGAAACGAGCCATATTCTTGCAAGAGGTGCAACAGCTTCTTCAGGATCAAGAACGACCTCGAGAGTCACGAGAAGGTCTGCTTAGCCGAGGAAAGGAGCGAGACGTCCTTGAGCGGCGAAGCATCGACGGATCCTGCGGATAAGGACAAGATTGTCGTGTCTTCGAAATATCGCATTATGACTATAGAGAAAATGAGACTACTACTTGCCGTTCTTCTCAAAAGAATCAGCAAACAGGAAAGGCTAGACGAGCTCGGTTTCGGGAAACGCCTTATAGACGATGTTCTTCAGGATTCACTCATCTCCGCCGGCAAGAAACCAATCACAGACAAGAACATGAACGAATTGGACGTTCTCACGAAGAATTTGGAGATTTTCCTACAGTGGACCGTGCCGAAAGAACATTGGGACAATTTTCAGAAGATGAAGAAGACACCGGAAGATATACTCGAAGCTCTTACGACTACGTAA
Protein Sequence: MQQNAPSGMPSLEQEEGVQLTELRPVKQSGIGEVGEGVTDAFRALRSISEDCRESEDYELGSFDYEKKSHKRKNGNTSGDDEADKKRKRNKNSKKIAKNGAKRRTDNTDSKKQSKKKKVDSVLVYVNEEEPMYLDLDKTNDSLGDEVYVFYGDPPSDSQQNDNQDEEDVQLDENETTDGVLFARTRHEVTRDSTDGENNTSENTEELNMKIDAIIQENYRRECENNNVVESDENQLDECQNEESETAGTNKTPAKRKSKVDEGGKEEQGTEKKYCCVVCDAKFKGSGGLRNHYKVAHGAGPVFKCDECGKEFPLKERLKLHVRTHTGFKPYKCTECDKSFARGGQLVQHRRTHSQVKPYRCSLCSGTFTCAANLALHVKRHNGQKDHKCDICGRGFVRRDALKKHLECLHRDVKSFLCGICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCTECNAGFTQLPHWKKHMKCIHGRNEPYSCKRCNSFFRIKNDLESHEKVCLAEERSETSLSGEASTDPADKDKIVVSSKYRIMTIEKMRLLLAVLLKRISKQERLDELGFGKRLIDDVLQDSLISAGKKPITDKNMNELDVLTKNLEIFLQWTVPKEHWDNFQKMKKTPEDILEALTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -