Gleg008345.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Goniozus legneri
Gene Symbol
PRDM16
Assembly
GCA_003055095.1
Location
NCVS01000943.1:151501-175878[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0047 0.36 11.1 0.4 2 23 300 322 299 322 0.95
2 9 0.34 26 5.2 0.2 1 23 329 352 329 352 0.93
3 9 7.4e-06 0.00057 19.9 0.7 1 23 358 385 358 386 0.93
4 9 4.1e-06 0.00031 20.7 2.6 1 23 392 414 392 414 0.95
5 9 2e-05 0.0016 18.5 6.0 1 23 420 442 420 442 0.99
6 9 0.0028 0.21 11.8 0.7 2 21 450 469 449 470 0.95
7 9 5.8e-09 4.5e-07 29.6 1.2 1 23 819 841 819 841 0.99
8 9 3.1e-07 2.3e-05 24.2 1.7 1 23 847 870 847 870 0.97
9 9 6.3e-06 0.00049 20.1 3.5 1 23 876 898 876 898 0.99

Sequence Information

Coding Sequence
ATGAACGGATTGGATCTGTCTCGATCGATGATCGACTATAGGATGAGTGGAAGTAGTGACGAAGGCGACTCAATGTCGGTCGTGGGTAACACGACCATGGAGAAGAACGAGCTGAACGATATTGGCTCAACGCGTAACGGTGGTGGTGTTAACAGTGCGCTCTATAACGATATGAAGATACATCACGAATCGATACAGGATTACGAAAAGTCGAGTCGACAGTCGTATCAACAATGTGGCTACTCGTCCCCTGTGAGTGCCTACGAGAAGGAACATCCGAGACCTCCGTCCGTTCGCGAGGATGATCGGAAATCTTGGGATTACGATAAACAGTCAGATCAGAAGGACTTCGGTAGGGCGCGAGACTACTCTAACGATTATCATGATTCTATTAAGCAAGAGTCGAAGGAACAATTGGGCCGAGACTGGATATCGCCAGTACCAGAAGTGGAGGTGGGCGGATCATCGCCAGGCGGGCCGCAGGTACGAGCGCGTAAGGATATACCGCGTGGTGCGAGATTCGGCCCGTTTCTCGGCAAGTGGGCGAGCGAGCCATTCAACCCCCGGTACGCGTGGGAGGTACGAATCGCTGGCAGTGGTGTTAGAGGATGGTTGGATGCATCTCACGAGGCGAACAATTGGCTCAAGTACATCCGGAGCACGGCTAGTCCTCACTCGATGAACATGCGGCATGTACTTATCGGTGGACAGGTGGTGTACGAGGCAGTACGAGACATCGCCCCCGGCGAAGAGCTACTTCTGGGTCTCCGAGAGCCACTTCAGCTTCAGGACATGCTCGGCGAGAATACGACCGAGGACAGGAGCGATAGAGAAACCGCGTCTCAACACAGTGGTACGGTTGACGAAGACAGAgaagaggacgaggagagcgagatcCGGTGTACCGTTTGTGACAAGCCTTTCCAAGATATCGAATTATTGGACAACCACTTGGTAACCTGTCACAGGTATCCGGCCGAACAGCATCGTTGCGAAAGCTGTCCACGTGGATACTCTTGGAGACCTCTGCTGGTTCGTCATCGAGCCATCGTACACGGCGACCTTCGAAAATATCCTTGCGAGAATTGCCCAaagTCGGCACTTCGACAGGTCTTTACGGATCCATCCAATCTACAGCGACACATTCGAACTCATCACGTGGGAGCCAGGAGTCACGCTTGCACCGAATGCGGAAAAACTTTCGCTACCAGTTCGGGATTAAAACAGCATACGCACATTCACAGCAGTGTAAAGCCGTTTCAGTGCGAGGTCTGCTTCAAATCGTACACGCAGTTTTCAAACTTATGTCGTCACAAGCGTATGCACGCGGATTGTCGTATGCGGATCAAGTGTGTTAAATGCGGAAATTCCTTCAGCACGGTAACGTCGCTATCGAAACATAAGCGATTTTGCGATTCGTCGACACCTACCGGTCCAGGTGGTACGATGCCACAACTACCGACACCACCCAGCCCGTTTTTGGTCTATCCAAGACCGCCTGGAAATTTGCCTGGAGGCTTACCTTTCTACCCTCACAGCCTAATGGGTCCATATCCAGGACTTTTCCCTAACGCACCAAACTTCCTCAATACGCCACTCTTGTTTCCACCtaaaatcgaagaaaacgaCAAGAGAAGCGAGAGCCCGAGCAAAGAACGCTTCACGCCACCGAGAATCCATTCGCAACAGAGCAAAATTTCACCGTCTACTGGAGAAGAGGCGACTTCCAACTTCAGACCATCTCCGGCTAGGCCGTCCGTTCAACAAACGGAGAGCGACGATGATTTGTCCAAGAAGAAGGAGTCATCGAAATCGCTCGATCGCAAAATAAAGAGCGAATCATCGAATAACAACTCGTCTAACGAAGAAACGTCGGATCAACCTTTGGATCTTCGAGTGCAAACGAAGAAATACGATGCCCCGGAATCCGCTGAATCGAAGAGTCGCAGTCCGTCACCGGCTCCGGTGGTAACGGATGCTTCGCCGTGCGCGGAGACGTCAAAACCCGAAGCCGAAGACTCGATCGCAATGGATACCAAGGATGTGCCCAGCAGTCCTCATCTACGGACGAGTCTAGGAGCCGAACGACCACCCACGAACACGCCACCTCATATGGCTTATCCTCGACCAATTCACCCGATGTTCTTAGAGGCTATGTACAGAACACCGACTGGGGGATTCCCAGGTTTTCCAAGTGGACCTCCACCTCCAGGAGGTACAGCTCCAGACTCGAGACTACTCCCTCCGTTACCTCCTTTCGGCCCTCCGCGGGGACTCCCTTTTTTAGGATCTCTCATGAATGGACTGAACGGAGGAAGACCAGGAGGAGGATTCGATCTTCTGGCTCGACCGCCTCTTGGCGCGTACCCAGGTGTCAAGCCTTTCCAGGACACTGGAATCGTCCctcatcatcatcaccatcaCCATCATCCTCACGGCAAAATAAAAGACCGTTATTCGTGCAAATTTTGCGGTAAGGTCTTTCCACGTTCGGCTAATCTTACGAGACACTTGAGGACACATACGGGTGAACAACCCTACAAGTGTAAGTACTGTGAAAGATCGTTTAGCATATCCAGCAATCTCCAACGACACGTACGCAACATCCATGACAAACAGAGGCCATTCAAATGTCCGATGTGCGAGAGATGTTTCGGTCAACAAACCAACCTGGATCGGCATCTAAAGAAACACGAGGCTGACGATGGAAGCGGAGTTGTCTCGGTGGCCGACTCACCAGGAAGTAGCAACGAGAACGAGCGCGAGGATTCTTACTTCGACGATATAAGATCCTTCATGGGCAAGGTAGCTTATGGAGGTGAAACTGGTTATGGATTACCACATCATCCTGCGTATCTACCCAATCGACTTCACGAAATGCACGAATCGAAAGTCGAAACCGAATACGACGAAGACGAGGACAGCGAAGAGGGAGTGTCTCCCTTGGAAGAAGCCGATGGTTTATCACCAATCAACACAAAGGAATCGTCACCGTCTCAGTTCGATCTGAAGATAAGAGACAAGCAAGAATTACTGAATAACAACACTGCTGAACccgtaattgaaatttcgacatAG
Protein Sequence
MNGLDLSRSMIDYRMSGSSDEGDSMSVVGNTTMEKNELNDIGSTRNGGGVNSALYNDMKIHHESIQDYEKSSRQSYQQCGYSSPVSAYEKEHPRPPSVREDDRKSWDYDKQSDQKDFGRARDYSNDYHDSIKQESKEQLGRDWISPVPEVEVGGSSPGGPQVRARKDIPRGARFGPFLGKWASEPFNPRYAWEVRIAGSGVRGWLDASHEANNWLKYIRSTASPHSMNMRHVLIGGQVVYEAVRDIAPGEELLLGLREPLQLQDMLGENTTEDRSDRETASQHSGTVDEDREEDEESEIRCTVCDKPFQDIELLDNHLVTCHRYPAEQHRCESCPRGYSWRPLLVRHRAIVHGDLRKYPCENCPKSALRQVFTDPSNLQRHIRTHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKSYTQFSNLCRHKRMHADCRMRIKCVKCGNSFSTVTSLSKHKRFCDSSTPTGPGGTMPQLPTPPSPFLVYPRPPGNLPGGLPFYPHSLMGPYPGLFPNAPNFLNTPLLFPPKIEENDKRSESPSKERFTPPRIHSQQSKISPSTGEEATSNFRPSPARPSVQQTESDDDLSKKKESSKSLDRKIKSESSNNNSSNEETSDQPLDLRVQTKKYDAPESAESKSRSPSPAPVVTDASPCAETSKPEAEDSIAMDTKDVPSSPHLRTSLGAERPPTNTPPHMAYPRPIHPMFLEAMYRTPTGGFPGFPSGPPPPGGTAPDSRLLPPLPPFGPPRGLPFLGSLMNGLNGGRPGGGFDLLARPPLGAYPGVKPFQDTGIVPHHHHHHHHPHGKIKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPMCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDSYFDDIRSFMGKVAYGGETGYGLPHHPAYLPNRLHEMHESKVETEYDEDEDSEEGVSPLEEADGLSPINTKESSPSQFDLKIRDKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01407591;
90% Identity
-
80% Identity
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