Gleg001964.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- -
- Assembly
- GCA_003055095.1
- Location
- NCVS01000900.1:23604-26143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.7e-05 0.0036 17.3 2.9 1 23 234 256 234 256 0.97 2 12 0.0078 0.6 10.4 3.8 1 23 261 284 261 284 0.93 3 12 0.00027 0.021 14.9 1.4 2 23 292 313 291 313 0.94 4 12 1.7e-05 0.0013 18.7 4.0 1 23 396 418 396 418 0.97 5 12 0.00055 0.042 14.0 1.2 1 22 423 444 423 447 0.89 6 12 1.8e-06 0.00014 21.8 1.3 1 23 486 509 486 509 0.95 7 12 1.5e-07 1.1e-05 25.2 1.7 1 23 541 563 541 563 0.98 8 12 0.00016 0.012 15.7 3.6 1 23 576 598 576 598 0.96 9 12 0.00012 0.009 16.1 4.7 1 23 604 626 604 626 0.98 10 12 0.001 0.08 13.1 3.2 1 23 632 654 632 654 0.98 11 12 3.6e-05 0.0027 17.7 6.5 1 23 660 682 660 682 0.98 12 12 0.00016 0.013 15.6 0.3 1 21 688 708 688 709 0.93
Sequence Information
- Coding Sequence
- ATGGTATCCAATatggaaaatcaaattgacTTGCCCTTTAACCAAAAAGGGATCTGCCGTGTATGTTTGTTCACAAACAATGATagtcaatatatttttcagtttgatTATCATGAAGGAAATACTGCTAATAATAGTTTATTTCACAAACTAATGATTTGTGGTGGTATTGAGGTATTAGAGCATGATGGATTACCTTCTACcatttgtaatatttgtatcacaaaaataaatgcagCATATGATTTAAGACAACAGTGTCAAAGGGCTGACATCGAATTGAGGAAATTATTTGGAAAACCATTAAAACAATATAAGCTTTCTCAACCTGttatgGATCAATGCTGTCAAACGGATGAATCTCTTATGCTAGAATTCTTgaaatctgaaaattatattagacCGTCaaaagaaacagaaagaatcattatgaaaaatactaGTGACAgtcaaaaatcaaataaaacaatcGAAAGATGTAATAATAGTCCTGCTTCAAATAGAAAACTGTATAGAACAAGACAAATGACTAGGTTTAAAAGAGTAACTTCTATAGAAAgtttgaagaataaaaaagaaaagcaaagacaatttattaaaaaaaatatattgaaactGAATCTCAAAGTGAAGGCTCccataaatgaaaaaacaattagtaataatttatgtaacaaCACTGAATCTTCAAATGTATCTTATAAATGTCTTGAGTGCAATAGATATTATACAACAAAGAGATCGTTACAAAGGCATTTATCACTTCatatgaatggaaaatataaatgtgagagttgcaacaaaaaattcgttcagtttaaaaaattatttgaacataAAGAACAATATCATAAGCAAAAacatcaattaataaaatgtaaactcTGTAGTAAAACTTTTAGAAAAAAAGGTACAATGTTAAGGCATTTAGATGcgcacaaaaaaaataattcaatagaagtattttcaatttcaagagtaaccaaaaataaacaaacagtAGACAATAATTATCAGCAATCAAAAAGTGAAGTGGTGAAAGTAGAATATACGGATTCAAAGAAAGACGAGAATTCAGATTCGTCCAAGACAACTGTACAGAATAAAAAGTCGTGCAAATCCCTTGAATCTCGTGCTGATTCTAACAATGATAGCGACTCGGAATTATCAGTTAATACGTCGTTTCATTCTTGTAAATACTGCAACAAAAACTACACAACCGAAAAATCATTACAGCGACATTTATTAATACACGGAGAGAAGAAGTTCGCGTGTGACATCTGTAATATGAAATTCTATCGACAAGaccgattgaaaaatcatcgCGATAGATATGGACATAAAGAAGATAATGAATCGTCCGAACATGAAAAAGCAGAAAACGATAAATCCGCTATCAAGCTGATAAACACCTGGGTACATCCGGAATTAGATTCCGACAACGAGAGCAAAGGTTTCTCGTGCAAAATGTGCGGTAAATCTTTCgatagtaaaaaattgttatcaaaGCATCAAATTAATGCGCATGAAACAAAAACTGACAACTGTACAATATGCGGGGAATATTGTATATgttcgaacaaaaataatcaagatAGTGTCCTAGAAGAGGCCAAGTCTTTTACTTGCAACGAATGTAATAAATCTTTCGAGAAGGAGAGCAAATTGCAAAAACATATTAGAATACACGAACGTGCAAAGGAACAAGATTCAAActtcaaaagatttttgtgTCACATATGTAGTAAAACGTTCAAACAAAATACAGGCTTGGTGTTTCACATGCGAACACATACTGGCTATAAGCCTCATGTTTGTAAATACTGTGGACGTGGTTTTACATCGAATTCAAACTGCATTAACCATGAACGAACTCACACAGGGGACCGACCGTTTGTTTGTCATTTCTGTAGTGCCGCTTTTGCAAAATCTTGCACTTTGAAGGCTCACATTACGACTCATACTGGTGAAGCTAATTACCACTGCAAAACTTGCGGTAAATCGTTTCGACGTTTGAAGTATTTGAAAGAGCACAGGTTCACTCACACCGGAGAGAAACCTTACGCCTGTAAAATTTGCGGCACCGCTTACAGTCACTCGGGTAGCCTCTTTGTGCATGAGAAGAAATGCAAAGCACAGTACAGTAATTATCAATCAGTTACGGTGCAAAATGTGTCCAACTATAATCCTGCTCAAGTCTCAATGCCAGCTTCTACTCCTGTTACGACTACGCTGCCTTCGTCGCATTTTACTAGTATCAACAATGTCCTCAGTTCTcagaataacaaaatatacattggtgatattcagaaaattaatacatCTACGTTGACAAGGTCGCCGTGTATAGACATTCCCCAAAATGCAGATATCACCGACGCCACGAGAAATATCGATCTTGTTGGACAAATGTTTAACTCGTAG
- Protein Sequence
- MVSNMENQIDLPFNQKGICRVCLFTNNDSQYIFQFDYHEGNTANNSLFHKLMICGGIEVLEHDGLPSTICNICITKINAAYDLRQQCQRADIELRKLFGKPLKQYKLSQPVMDQCCQTDESLMLEFLKSENYIRPSKETERIIMKNTSDSQKSNKTIERCNNSPASNRKLYRTRQMTRFKRVTSIESLKNKKEKQRQFIKKNILKLNLKVKAPINEKTISNNLCNNTESSNVSYKCLECNRYYTTKRSLQRHLSLHMNGKYKCESCNKKFVQFKKLFEHKEQYHKQKHQLIKCKLCSKTFRKKGTMLRHLDAHKKNNSIEVFSISRVTKNKQTVDNNYQQSKSEVVKVEYTDSKKDENSDSSKTTVQNKKSCKSLESRADSNNDSDSELSVNTSFHSCKYCNKNYTTEKSLQRHLLIHGEKKFACDICNMKFYRQDRLKNHRDRYGHKEDNESSEHEKAENDKSAIKLINTWVHPELDSDNESKGFSCKMCGKSFDSKKLLSKHQINAHETKTDNCTICGEYCICSNKNNQDSVLEEAKSFTCNECNKSFEKESKLQKHIRIHERAKEQDSNFKRFLCHICSKTFKQNTGLVFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQSVTVQNVSNYNPAQVSMPASTPVTTTLPSSHFTSINNVLSSQNNKIYIGDIQKINTSTLTRSPCIDIPQNADITDATRNIDLVGQMFNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -