Gleg003772.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- -
- Assembly
- GCA_003055095.1
- Location
- NCVS01000451.1:44188-46968[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.2e-05 0.0024 17.9 1.2 2 20 147 165 146 168 0.95 2 13 0.0001 0.0078 16.3 1.8 1 23 174 197 174 197 0.94 3 13 0.00019 0.015 15.4 1.2 1 23 203 225 203 225 0.98 4 13 1.9e-05 0.0015 18.6 1.0 1 23 377 399 377 399 0.98 5 13 0.0021 0.16 12.2 0.2 2 21 409 428 408 429 0.93 6 13 0.00025 0.02 15.0 2.6 1 20 451 470 451 473 0.92 7 13 0.015 1.2 9.4 0.5 1 23 478 501 478 501 0.95 8 13 1.2e-06 9.5e-05 22.3 0.3 1 23 507 529 507 529 0.98 9 13 0.0017 0.13 12.4 6.3 1 23 536 558 536 558 0.98 10 13 0.0003 0.023 14.8 0.4 3 23 566 586 564 586 0.97 11 13 0.00034 0.026 14.6 0.2 1 23 592 615 592 615 0.96 12 13 0.85 65 4.0 0.4 1 23 629 651 629 651 0.90 13 13 0.0025 0.19 11.9 0.0 2 23 904 925 903 925 0.96
Sequence Information
- Coding Sequence
- ATGGATGCTCATGAAAGTGATCAATATGTAACATTTCCTCTAACTGAGGTACATGGTTCTATCGatgcaaatattatttcgcaTGAAGAGATTTGCGAGCCTGCTGATGAATGTGTTTTACAAGATGGATTAGCAGAAGTTCCTGTAACTGATGTTACTGCAGAAATGACAGAGGCTCAGGTAgctgttgaaattttaacagaaCGTTCAGATgaagaagatgaaaattccGTTGTCTATCCAATCTATATCAAACAAGAAGAACAGCAACAGTATACTTCTGGTGATGATGAATCAATGGCTGTGGAAGCACTACGACAACTTGGTGGAATGTATCCGTgctttgaagaaaaaaaggacagtTGTTCTAATTGCGGTGATCTTATTACACAGTCTGAAATGACGAAACATCAGGAGACATGTTCAGCTATGAAATTATCTTGTTCTATTTGTGGAGAGAGATTTGAAAGAAAAGTAAATCTAAATAATCATATGGTGTGTCATCAAGTAGATCGTCCTCATGCATGTAGAACATGCGGTACTTTATTTCGATCCAAAAGTAGTCTACAGTCTCATATGCTCCAAGTGCATCAAGTAGAAAGACCTCACAAATGTACAATTTGTGGTTCAGATTTTCTGAGACCATCTAGTTTATCAAatcatatgaaaattcatacttaTGTGGCTGGGCGTGCTATTTTAGAAAGCCAAGGCAACACTGCTGTACAGACAACAGAATCATTTAGaaagtggaatgaaaataatgttacAGATTCTCAAAATATTGCTGCAACTTCAACAACTGTACAGTCCATACCAAATTACGAAACTTGTCAAGTTCAATGGGCTGTCCCTGcctataattttaataatgacCAATCAAATGTAAATGCTGTATCTAGTCAACCAGATAAGATGGATACTTTACAAGAATTTACAGTGATGCCCAATGGTGAAGTAACTCAATTTGAATTCTCTCAAccaaataacataaataatcaagttaatcaacaatataatttacaaCTGAATGTATTTAACAATCAAGAAACTATGGTAAAAATAGAAACCTATAATGATGAATCtagaagaaattttgttgaagcTGAAGGTGGTAATACCAAGAAACATACATGCACTCATTGTGgtgtcaatttttctcgagctgCTGCTTTAGCAATACATGAAAAAACACATACAGTAAAGAACTGGAGCATGCCAATAGAATGTGAATACTGTGACAAACAGTTTCAAGACGGCAATCATTTAGCTGCTCATCAAACAACTTGTGCAAAGAAATTAATGCAGAATAGCATAGAGCAGGGTATAACAAACAATAAATGGGGAAAACATGCTTGCTCTGAATGCGGTAAAAAATTCAccacaaaacaaaaaatgtttcgtcATCAATGGATTCACAGGAAGAAAACACACTCATGTGAAGTATGTGGATCTCAATTCGAGAAGCAGAATGAACTCGATGAGCACCGCTTATCGGCGCATCCAGGAGATTCACCATTCACGTGCTCCGAATGTGGCAAAAGTTTTGTTTCGCGACAGGGTCTCTGGGAACATGGTAGAACTCATGCTGGAAGTCCGGCTCATTTCCATTGCGACACGTGCTCCAAAACGTTTTCGTCACGTCAGGGATATCTGATTCATCATCGGACCCATACAGGAGAACGGCCGTACGGTTGCAAATTTTGTTGGAAAGCTTTTAGAGATGGCGGTACTCTACGTAAACATGAACGAATTCATACTGGTGAACGACCTCATGTTTGTCCATTATGCTCTAGAGCTTTTAATCAAAAGGTCGTTCTTCGTGAACACGTTAGATGGGTTCACGCCGCGGGAAAGAACGAAACGGATGTAGCTGGTCCGCCCTTTACTTGTCCTCTGTGTGGCTCTCTGAATCAAGATCGAGATGAATTGTGCGCTCATATCGTCAAACATTCAGATCAAATGGTAGCAGAAGCTAGAGCtaaaattaacaacaattcACCAAAAACAAAACctgtaaaaaagaaatcgaaaacgGCTGGAAATGTTACTGAAAAGCAAAATACGAGAATTAATGCAGGGATTGAACAAACTCAAGCTCTGTTATCCATTACGGAGACACCTGATAAATCATATGAGGATCAGAATAAGCAGAGTAATACAGTACTCTTGGTTGCCACAGGCAAAGGCAACGAACAAATTCATCTACTCTCTGACATTAAGCAGAATAATATATGTGTTATAACACAGGATAAAGAGGATCAGAACATACATATTTCTCAAGTAGATCACGAATCCATAAATTTGGTCGAGATGGAAAAACAAGACGATAATATGCATTCGATAAAAGAAAGCGATAGAATCCTTCATGGCATCCCTTTAAGCAGACATAGCGATATGACTACAGTACATCTTATTCAAACTACTAAACCAAATACCTTACATTTGATATCAAAACAAAATGAGTCACTTCCAGTTTTAGCTTTACCAAATCCTCAAAACCATGATGATTATTCTAGCCAAATTGTCGAAATAAATAGCTCAGACCTTCACATGGATATAGATCCCCTTAGTACGCCTACACAAAATCAGAATGTGAAATGCGAAAGCGAAGAAGAGCAAGAATCTATAATGCATGATGTTGTGCCTCAACCAGCTGTAATTCAAATAGTTCAGTATCAGAATGATAGCGATAGCAGCGAAGAAATGGTATGCGGTATCTGTGGAGAAGATTTTGATGATAAAAATGTACTAATGGAACATGTGAAGattcatatataa
- Protein Sequence
- MDAHESDQYVTFPLTEVHGSIDANIISHEEICEPADECVLQDGLAEVPVTDVTAEMTEAQVAVEILTERSDEEDENSVVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEEKKDSCSNCGDLITQSEMTKHQETCSAMKLSCSICGERFERKVNLNNHMVCHQVDRPHACRTCGTLFRSKSSLQSHMLQVHQVERPHKCTICGSDFLRPSSLSNHMKIHTYVAGRAILESQGNTAVQTTESFRKWNENNVTDSQNIAATSTTVQSIPNYETCQVQWAVPAYNFNNDQSNVNAVSSQPDKMDTLQEFTVMPNGEVTQFEFSQPNNINNQVNQQYNLQLNVFNNQETMVKIETYNDESRRNFVEAEGGNTKKHTCTHCGVNFSRAAALAIHEKTHTVKNWSMPIECEYCDKQFQDGNHLAAHQTTCAKKLMQNSIEQGITNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCSECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETDVAGPPFTCPLCGSLNQDRDELCAHIVKHSDQMVAEARAKINNNSPKTKPVKKKSKTAGNVTEKQNTRINAGIEQTQALLSITETPDKSYEDQNKQSNTVLLVATGKGNEQIHLLSDIKQNNICVITQDKEDQNIHISQVDHESINLVEMEKQDDNMHSIKESDRILHGIPLSRHSDMTTVHLIQTTKPNTLHLISKQNESLPVLALPNPQNHDDYSSQIVEINSSDLHMDIDPLSTPTQNQNVKCESEEEQESIMHDVVPQPAVIQIVQYQNDSDSSEEMVCGICGEDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -