Basic Information

Insect: Goniozus legneri
Gene Symbol: -
Assembly: GCA_003055095.1
Location: NCVS01000104.1:41869-44222[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.5e-06 0.00042 20.3 3.3 1 23 292 314 292 314 0.97

2 12 4.4e-05 0.0034 17.4 3.2 1 23 318 340 318 340 0.98

3 12 0.47 36 4.8 6.8 1 23 345 367 345 367 0.95

4 12 0.00021 0.016 15.3 2.5 1 23 418 440 418 440 0.98

5 12 0.00063 0.048 13.8 1.4 1 23 445 467 445 467 0.97

6 12 0.00012 0.009 16.1 2.4 1 23 516 538 516 538 0.98

7 12 0.00015 0.011 15.8 0.8 2 23 546 567 545 567 0.97

8 12 7.8e-07 6e-05 22.9 2.1 1 23 577 599 577 599 0.96

9 12 0.00018 0.014 15.5 1.6 1 23 605 627 605 627 0.97

10 12 0.00013 0.0097 16.0 0.7 1 23 633 655 633 655 0.98

11 12 3.8e-06 0.00029 20.8 2.0 1 23 661 683 661 683 0.96

12 12 6.7e-05 0.0052 16.9 0.3 1 22 689 710 689 710 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.5e-06	0.00042	20.3	3.3	1	23	292	314	292	314	0.97
2	12	4.4e-05	0.0034	17.4	3.2	1	23	318	340	318	340	0.98
3	12	0.47	36	4.8	6.8	1	23	345	367	345	367	0.95
4	12	0.00021	0.016	15.3	2.5	1	23	418	440	418	440	0.98
5	12	0.00063	0.048	13.8	1.4	1	23	445	467	445	467	0.97
6	12	0.00012	0.009	16.1	2.4	1	23	516	538	516	538	0.98
7	12	0.00015	0.011	15.8	0.8	2	23	546	567	545	567	0.97
8	12	7.8e-07	6e-05	22.9	2.1	1	23	577	599	577	599	0.96
9	12	0.00018	0.014	15.5	1.6	1	23	605	627	605	627	0.97
10	12	0.00013	0.0097	16.0	0.7	1	23	633	655	633	655	0.98
11	12	3.8e-06	0.00029	20.8	2.0	1	23	661	683	661	683	0.96
12	12	6.7e-05	0.0052	16.9	0.3	1	22	689	710	689	710	0.96

Sequence Information

Coding Sequence: atgaattCCACATATTTTGAAATGCCATTGAATATGGATAGAGTATGCCGAATCTGCCTCACAGAAGCTACCAATTTATCTCCAATATTTGGTATCGATCAAGATGTTTCAGATTTTTCAGGCCTCTcaaagaaaatacaaatatgtGGATCCATTGATATTCATGAGGAAGATGGATTGCCTTCTCTAATATGTGATATGTGCATATACAAAGCAAGTGTTGCGCACGAGTTTCGACAACAATGTCAACATTCAGATacaaaattaagaatattctACAACAAACCTACCAGATATAACTATATGGATTCTAGTACACAAACTGATTCTCCAACTAGGACCATATTAACAGGGAATAGTCAAGAAGATTATTATGTCAAAGAAGAGATGGTGGTTGCATCAGAACCTCAAACTCTTTTACAACCTAGTCATAATTATTGTGAAAAACCAGATGCTATTGCCACTGAGCTTGATATGCAAGATGATAAACTATTCATGTGCACAGAGAATTTAACACAATCTACTACAGTAGAAAATGATTCTTTTGTACAAGAGAATGATGTCCAACAACTTTCGATATTTGAAAGTGGTTCTCAGTCCACTGTAAATAGTATGgataaatcagaaaatttaCAAGTAAAAACAATGGAAATACCCTCATTAGTAacagtagaaaataaaataaatgaaccaAGCAATGATGTTGACAAACaaaattctgaacaaaatATAGAACATGATGAGACATTGCCACAAAAGAGAACATCTGCTAGAAAAATAAAGTCTGTATcaagtaattttttcagtgaTGATGAATTTGATGGTAATTATTATGATGATAGTAGTGATAGTCAAAGTATGgatggtaaaaaatttaaatgtaaaatttgtgaTAAATGTTATGCTACTCAAAAGGGGCTCAAAAGACATTCCTTAATACATGATAAGAATCATAAATGTGACGTTTgttcaaaaatgttttataaagaagaaaatttagaaaaacacaaaaaaatacaTGAAACTAAACCACATGCTTGTCAGCTTTGTTGTGCCTGTTTTTCAAAGTCGCAAAGTCTTGTACGTCATCTAAAATCTCATACAGAAAAAgtaaatgatattattaagCAAATCAACACTATAGAGCAGAAAGATGATGCTCAGTCTGAAAGAGAGCTAAAAAATGAAGGTGACAGCGATAATGAACTCCCTAAAACTGAGACTGATGATTTTGAGGATGCTCCAGAATTGTATAAATGTGATATATGCAGTCAGTATTGTTCTTCtttgaaaaacttgaaaaGACATGCACTAGTTCATGGTGAGAAGAAATATTCTTGTACAGTTTgtaaaaaatggttttttagACCAGATACGTTGAAGAAACATGCTGAAAAGCATGGTCACGGCTTATTAGATAACTTAGTggatgataataaattatatgattCGGATGATGATCCTTTTCCTCATGAAAAAGATAGTATTGcacaagaaaaagagaaccCAAAAAAAGATGATAGCGATGAAGAAGGATTTGGTGAATTCAAGTGTCAACATTGTGATAAAGTCATGGCTACAAAAAAAGGATTGAGGCGGCATGTATCTATGCACAAACCAAAAGCTGAACCTGTTATGTGTGAGATATGTAAAAAAGTTTGTGCTAGTCAGGCACGATTAGTTCTTCATCAAAGGACACATAAGCCAAAAGAGAAGGTACCACGTGAATATTTGTGCCATATATGTAGTAAGGTTTACCCAAGTAATTCTTCTTTAACTTATCATATGAGGACCCACACTGGTGTAAAACCACATGTTTGTAAAACATGTAATAGTGGTTTTACAACAACCACCAGTTTAGCTAATCACATACGTATTCATACTGGTGATAAGCCATTTGTTTGTCACGTCTGCAGCGCGGCTTTTGCAGTAAGTTCTGCCTTTAGACGTCATTTAACCCGACATACTGGAGAGGCAAACTATCTTTGTAAAACTTGTGGCAAAGCTTTCAAAAGACTCAGTACTCTGAAAGAACATACTTATACCCATTCTGGTGAAAAACCATATGTGTGTAAAACTTGTGGTGCAGCTTATAGTCATAGCGGGAGTTTGTTTGCACACCAGAAGCGTTGCCGAGCTCAATATGGTGATATGGGAGTGGATGATCAGAACCATCATCATAACATTTCACATATTCATGTTAACAATGTTCAATCAGCTGTACGTTCGCTTACAGTTATTGGGCAAATGTATTGA
Protein Sequence: MNSTYFEMPLNMDRVCRICLTEATNLSPIFGIDQDVSDFSGLSKKIQICGSIDIHEEDGLPSLICDMCIYKASVAHEFRQQCQHSDTKLRIFYNKPTRYNYMDSSTQTDSPTRTILTGNSQEDYYVKEEMVVASEPQTLLQPSHNYCEKPDAIATELDMQDDKLFMCTENLTQSTTVENDSFVQENDVQQLSIFESGSQSTVNSMDKSENLQVKTMEIPSLVTVENKINEPSNDVDKQNSEQNIEHDETLPQKRTSARKIKSVSSNFFSDDEFDGNYYDDSSDSQSMDGKKFKCKICDKCYATQKGLKRHSLIHDKNHKCDVCSKMFYKEENLEKHKKIHETKPHACQLCCACFSKSQSLVRHLKSHTEKVNDIIKQINTIEQKDDAQSERELKNEGDSDNELPKTETDDFEDAPELYKCDICSQYCSSLKNLKRHALVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLYDSDDDPFPHEKDSIAQEKENPKKDDSDEEGFGEFKCQHCDKVMATKKGLRRHVSMHKPKAEPVMCEICKKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGDMGVDDQNHHHNISHIHVNNVQSAVRSLTVIGQMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -