Basic Information

Insect: Goniozus legneri
Gene Symbol: -
Assembly: GCA_003055095.1
Location: NCVS01000748.1:248842-251134[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.6 2e+02 2.4 0.1 1 23 335 358 335 358 0.84

2 10 0.0074 0.57 10.4 0.9 1 23 365 387 365 387 0.98

3 10 0.00031 0.024 14.8 3.4 1 20 393 412 393 415 0.96

4 10 1.4e-05 0.0011 19.0 0.3 1 23 421 443 421 443 0.97

5 10 2.2e-06 0.00017 21.6 3.0 1 23 449 471 449 471 0.98

6 10 8.5e-05 0.0066 16.5 0.8 1 23 482 504 482 504 0.98

7 10 1.2e-08 9.3e-07 28.6 1.5 1 23 510 532 510 532 0.99

8 10 1.1e-06 8.5e-05 22.5 0.4 1 23 538 560 538 560 0.97

9 10 6.4e-05 0.0049 16.9 0.1 1 20 566 585 566 588 0.92

10 10 8.8e-06 0.00068 19.6 0.1 2 23 595 616 594 616 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.6	2e+02	2.4	0.1	1	23	335	358	335	358	0.84
2	10	0.0074	0.57	10.4	0.9	1	23	365	387	365	387	0.98
3	10	0.00031	0.024	14.8	3.4	1	20	393	412	393	415	0.96
4	10	1.4e-05	0.0011	19.0	0.3	1	23	421	443	421	443	0.97
5	10	2.2e-06	0.00017	21.6	3.0	1	23	449	471	449	471	0.98
6	10	8.5e-05	0.0066	16.5	0.8	1	23	482	504	482	504	0.98
7	10	1.2e-08	9.3e-07	28.6	1.5	1	23	510	532	510	532	0.99
8	10	1.1e-06	8.5e-05	22.5	0.4	1	23	538	560	538	560	0.97
9	10	6.4e-05	0.0049	16.9	0.1	1	20	566	585	566	588	0.92
10	10	8.8e-06	0.00068	19.6	0.1	2	23	595	616	594	616	0.96

Sequence Information

Coding Sequence: atggaattcgaAACTAGTTTTATCGATATGTGTCGTGCCTGTATGGAAGTCGACGGTGTTTTACTTCCAATGTACGATGACGAAACTATCAGTAAAAAAGATTTGCCTGCTAAGCTTGCGGAACTGACGTCTATTGAGATCAACAGAGACGATGGATTACCAAACAAGTTGTGCTCCAAGTGTGCTTATCGCACAGACgctttttacaaatttaagtTACAAGTTCAAGCcacagaaatgaaattacgtCAAATGGCTGAGAGTTGCGTTACTAAGGACGAGAGTGACAAAGATTTTActataaaagaagaaatcgCTAATGGCAACACTAACGTAATAGAAGATATAGAAGAAAGCAAAATTGTTTTAAGCAAAAGCTTAAACCATATGATCCCGATAGAACGCAATGAGGAACTAATGGATGTCGATAAATCTTCTTTGCCGCACGACGATATAGAAGCGATTACTAATGAAATGTATGTCGAAAACATCATTATGTCTAAAATTGATATAGATACTTATAACCAGGTGGATGCTTGTAAAACGGAAATTCCTGAACAAATGACTGAAATTTTCCAAGCGGGAAATATGAATTACGCAATTATGTACATACCGGAATCGATTAACGATACTATAGAGCAAATCGATGTTGAAAATTCAGCATGTTCGAACAATATCATTATACCAATTACGACTGAAGATATtcaaaatcatgaaaatttagaTAATTCTAATCCAATGTTGGAGAATGGGCAACTGTTGTTGACCCATGAATTGAGTAAGAAAGATGTTGCGAACGAAACCACAATGGTCAACTTGGAACACCAAGTTGATAGTGCTATCGAAATTCAGGAGCAATCGCCTGACAAATCAACCGACAAAGAGCAAAACGAAGAATCCGACTCTGATTACTTTGCAGAAAATAGAGACAACATTCTAGGAAGTTTGAACGATGCCATAActagaataaaagaaattaaagtgGATGGAAATCGCAAACAATATCAATGTACATTGTGTTTACAAAATTACGATAAGTTAACCGGCGTCCTATTACATATTATAGATAATCATATTCCAACCACAGGACCTTTTTATTGTGTCGTTTGCGAAAAAGATTGCGAAAGTATCAAATTGTTGCGTGCTCATGCTAAAACGCATACAGGACAGTATCCttattcttgttttatttgtcAAAAAGCATATGCATCTAAGAGGTATCTCAAACGACATATGGTTTGTCATTCTGATTTTCCAAAATATCGCTGTCCAAAATGTGGACTAAGATTCAATGTTAAAACAGAACTCGAATCCCATGTCACGATTCATGTTAATGGAGTACCATACGAGTGTAGTCAGTGTCCAAGAAGTTTCAATCACAAAGGAAATTACAAACGACATCTAATAAGTCACTTGGATCCGCAAGGTCTACGCTTACCTAAATATCCATGTAAAGTGTGCGGGAagagatttttaaataatcgaacaTTAGAAACGCATAATCGAGTGCATACAGGCGAGAAGCCATACAAATGCGATATATGTCACAAATCGTTTTCTCAGCAAGGCAATTTAATCAATCATGTACGTATTCATTCCAATCCAAGAAGTTATACCTGCGAAGTATGCGGGAAGCGTTTCAATCAAGCATCTACGCTTCGAGATCATAGTCTCATACATACGGGAGAGAAACCTTACGTTTGCAGTGTATGCGGAGTGGCATTTACCTTTAGCGCAGCGCTAAGACGTCATTTATGGACTCACTCTCAAGGCAAACCGCTTCAATGCGAGATATGCGGTTCGAAATTTGTTGGAAAATACGACTTGAGAAGACACATGGCTATACATACGGATAGACCAAAatataaaaggaaaaagaattctACAAAAACTAACGTCGAAGAGAACGAAGCTGCCAAAGAaccaaaagaagaaaatggaaCGCTACAAATTacaaatgttgaaccaataaTAATAGAAGAAGTTTTATTGAATCAAGACAATACGCAAATTGTCCATCAAGAAGAATCCGAGAAAGAAAACGTCGATGCGCTTTTCAACTTGATACAATACGGATAA
Protein Sequence: MEFETSFIDMCRACMEVDGVLLPMYDDETISKKDLPAKLAELTSIEINRDDGLPNKLCSKCAYRTDAFYKFKLQVQATEMKLRQMAESCVTKDESDKDFTIKEEIANGNTNVIEDIEESKIVLSKSLNHMIPIERNEELMDVDKSSLPHDDIEAITNEMYVENIIMSKIDIDTYNQVDACKTEIPEQMTEIFQAGNMNYAIMYIPESINDTIEQIDVENSACSNNIIIPITTEDIQNHENLDNSNPMLENGQLLLTHELSKKDVANETTMVNLEHQVDSAIEIQEQSPDKSTDKEQNEESDSDYFAENRDNILGSLNDAITRIKEIKVDGNRKQYQCTLCLQNYDKLTGVLLHIIDNHIPTTGPFYCVVCEKDCESIKLLRAHAKTHTGQYPYSCFICQKAYASKRYLKRHMVCHSDFPKYRCPKCGLRFNVKTELESHVTIHVNGVPYECSQCPRSFNHKGNYKRHLISHLDPQGLRLPKYPCKVCGKRFLNNRTLETHNRVHTGEKPYKCDICHKSFSQQGNLINHVRIHSNPRSYTCEVCGKRFNQASTLRDHSLIHTGEKPYVCSVCGVAFTFSAALRRHLWTHSQGKPLQCEICGSKFVGKYDLRRHMAIHTDRPKYKRKKNSTKTNVEENEAAKEPKEENGTLQITNVEPIIIEEVLLNQDNTQIVHQEESEKENVDALFNLIQYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -