Gleg012795.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- topi
- Assembly
- GCA_003055095.1
- Location
- NCVS01000176.1:59742-62030[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0037 0.28 11.4 1.3 1 23 237 259 237 259 0.97 2 15 0.029 2.2 8.6 1.8 2 23 266 288 265 288 0.95 3 15 0.2 16 5.9 0.5 2 21 295 314 294 315 0.92 4 15 7.9e-06 0.00061 19.8 0.4 1 23 322 344 322 344 0.96 5 15 8.7e-07 6.7e-05 22.8 3.3 1 23 350 372 350 372 0.98 6 15 0.013 1 9.7 3.8 1 23 421 443 421 443 0.97 7 15 0.005 0.38 11.0 0.3 1 23 449 471 449 471 0.97 8 15 0.0031 0.24 11.6 1.0 1 23 481 504 481 504 0.94 9 15 0.21 16 5.9 0.0 1 21 518 538 518 539 0.93 10 15 0.00064 0.049 13.8 0.1 1 23 544 566 544 566 0.98 11 15 1.7e-06 0.00013 21.9 3.1 1 23 572 594 572 594 0.98 12 15 3.7e-05 0.0029 17.7 1.2 1 23 600 623 600 623 0.97 13 15 0.036 2.7 8.3 0.5 1 23 629 651 629 651 0.88 14 15 2.5e-07 1.9e-05 24.5 3.2 1 23 657 679 657 679 0.99 15 15 2.9e-06 0.00023 21.1 5.0 1 23 685 708 685 708 0.96
Sequence Information
- Coding Sequence
- atgattaatgttaattttgaaAGCAAAGAAATTGTCAGACTCGAATCAACAAGTTCCATCATTGACGaagaaaatgatatatttGAAGGATCTAATATATGGTCACAAGATAAATTTCTGTCACCGAATGATTTGGAATCGGGAAACGTGCTTTGTAGATTATGTGCTGGTGATGCTCTTAAtccaatatttatatactctGAAATCGGTGAATCAATGAAATTAgctgataaaataaataattatctaaGTATCAAGATCAAGAAAACTGATTCATTACCAAAACAGTTATGTAATGtatgcataaaaaaaataatttggtgCGATCAGTTTAATAACCAGTGTGTAAATGCCGAAAAAGTATTATCGAACGTATTTCAAGAACAGGAACGTAATTTCACAGAATTTGATCAGACCGAGAAAAAATCTTGTCCGCTTTGTGTAAACGGATGTATGGGTTTTTACTCTTCAGATGTAGCGgttgaaaattcagaattttatgaTAGCAAtatcgtattaaaaaatagccATGAGAAGGCACGATTTGAAACTCACAATATTAAGAATGATAAAAAGCCAGAATTACTGCAGTTATTAGATAATAGTCAgcaatatttaaaatgcaaTGCTTGCATGAATTTATATATCTCGCAAACAATGTTGAACGAGCATAAATGCAAGCCCATTGTATCAAATACATCTAAGTCTTATAAGTGCCCGAACtgcgatttaattttcacgtTTGAAGAACGTCTAAATTTTCATATGCGATTTCACTCTGGTGCCAGAGCCCTTTATTGTGAAATTTGTAACTCAACTTTTAGTAAAGAGTTGAAACTCTTTTATCATTACAAGCGATATCATTTCAGCGAAACTAGCGTGTCATGTTTACAATGTGgtaaactttttgaaaatcgacaaatattgaaaacacACATCTGTGCTGACGGCAAAACCCGCCCTCATATTTGTGATATTTGCAATAAAGGATTTTCCGATGGATATACTTTAAAACGACATATAGCCATACATCTACCGGAAAAGCCCTTCAAGTGTTCCAAATGTTCGAAGAGTTTTACACAAAAATCAAGACTGAATAAACATATAGCTAGTCACGAGGTAATCATCAGTAATACTCAATCAGTGTGGAAATGTATACATTGCGgcatgatttttcattcaaacgaAATCGTCGATGCTCATTGCAAATCgcatgaaaatcaaatttctatAATCGAGCAGCTAACCGTTTCAAAGATTTATCACTGTGAATTTTGTAACAGTCACTTTAATAATGTAGCAGAATTAAAAATCCATCAGAATCAACATGTAGTTGAGAGACCATACAACTGTAATATTtgcaatataattttcaaatcttttgTAGAAGCTAATTTACACTGGAAAAGTCATTCGAAAGTTTTTAATGtgacgattttatttttgtgtgaTATATGCGACAAAGATGTGAAAGAATTATCGTCACTTTATAAACATAAACAAAAAAGACATTGCTATTCGTCTAGAAAATCGGAGTtatatatttcgaaatttatttgcgAATTATGTGGAAGTCTTTTTGAGACTTCTGAAGAAATCATAAATCATGCACGTAAACAATGCTCAAAATTTCCCTGCGATATATGCGGTAGTGTTCTTCCAACTACCAATTCTTTAAATGCTCATAAGAGAAAACACAGCGGTTTGAGACCTTACGTCTGTAATATTTGCGGCAAAAGTTATACACAATCAAGTCATATGTGGACTCATAAAAGATTTCATATGGGCGTAAAACCATACGCTTGTGAGTACTGTgatcaaaaatttacaatgaaacAAGATTTAGCTGATCacacgagaaaaaaacataCAAGAGAACGTCCTTTTAGATGTGAAGTATGCGATAAAGCGTTTCTAACTGGTTCAGTATTTTACCAGCATAGATTAATTCATAGAGGAGATCGAAGATATAAATGTCATTATTGTGAGAAAACATTCACCAGAACAGAAGCTCTGAACAATCACATAAAAATACATACTGGTGAAAAACCTCACGCTTGTGACATATGCGGACGATGTTTTAGGCAAAAAGGAGATATGAGAAAACATAGAAGAACACAACATACAGAATTACAAGttacatattaa
- Protein Sequence
- MINVNFESKEIVRLESTSSIIDEENDIFEGSNIWSQDKFLSPNDLESGNVLCRLCAGDALNPIFIYSEIGESMKLADKINNYLSIKIKKTDSLPKQLCNVCIKKIIWCDQFNNQCVNAEKVLSNVFQEQERNFTEFDQTEKKSCPLCVNGCMGFYSSDVAVENSEFYDSNIVLKNSHEKARFETHNIKNDKKPELLQLLDNSQQYLKCNACMNLYISQTMLNEHKCKPIVSNTSKSYKCPNCDLIFTFEERLNFHMRFHSGARALYCEICNSTFSKELKLFYHYKRYHFSETSVSCLQCGKLFENRQILKTHICADGKTRPHICDICNKGFSDGYTLKRHIAIHLPEKPFKCSKCSKSFTQKSRLNKHIASHEVIISNTQSVWKCIHCGMIFHSNEIVDAHCKSHENQISIIEQLTVSKIYHCEFCNSHFNNVAELKIHQNQHVVERPYNCNICNIIFKSFVEANLHWKSHSKVFNVTILFLCDICDKDVKELSSLYKHKQKRHCYSSRKSELYISKFICELCGSLFETSEEIINHARKQCSKFPCDICGSVLPTTNSLNAHKRKHSGLRPYVCNICGKSYTQSSHMWTHKRFHMGVKPYACEYCDQKFTMKQDLADHTRKKHTRERPFRCEVCDKAFLTGSVFYQHRLIHRGDRRYKCHYCEKTFTRTEALNNHIKIHTGEKPHACDICGRCFRQKGDMRKHRRTQHTELQVTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -