Basic Information

Insect: Goniozus legneri
Gene Symbol: -
Assembly: GCA_003055095.1
Location: NCVS01000100.1:342345-346115[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2e-05 0.0015 18.5 0.7 1 23 146 168 146 168 0.95

2 15 0.00074 0.057 13.6 1.1 3 23 176 196 175 196 0.99

3 15 0.00047 0.036 14.2 0.1 1 23 318 340 318 340 0.98

4 15 0.003 0.23 11.7 0.1 1 23 346 369 346 369 0.97

5 15 2.4e-05 0.0019 18.3 2.0 1 23 395 417 395 417 0.98

6 15 1.4 1.1e+02 3.3 0.0 1 23 432 454 432 454 0.86

7 15 0.42 32 4.9 0.4 2 23 461 483 461 483 0.94

8 15 0.0031 0.24 11.6 3.0 2 19 491 508 491 512 0.95

9 15 0.00015 0.012 15.7 3.5 3 23 520 540 518 540 0.97

10 15 0.011 0.85 9.9 0.1 3 23 547 567 546 567 0.97

11 15 6.5e-06 0.0005 20.1 0.4 1 23 576 598 576 598 0.98

12 15 0.0028 0.21 11.8 0.2 3 23 606 626 604 626 0.97

13 15 0.0025 0.19 11.9 0.2 3 23 634 654 632 655 0.94

14 15 0.34 26 5.2 0.0 1 23 669 691 669 691 0.93

15 15 0.002 0.15 12.3 0.0 1 20 1072 1091 1072 1094 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2e-05	0.0015	18.5	0.7	1	23	146	168	146	168	0.95
2	15	0.00074	0.057	13.6	1.1	3	23	176	196	175	196	0.99
3	15	0.00047	0.036	14.2	0.1	1	23	318	340	318	340	0.98
4	15	0.003	0.23	11.7	0.1	1	23	346	369	346	369	0.97
5	15	2.4e-05	0.0019	18.3	2.0	1	23	395	417	395	417	0.98
6	15	1.4	1.1e+02	3.3	0.0	1	23	432	454	432	454	0.86
7	15	0.42	32	4.9	0.4	2	23	461	483	461	483	0.94
8	15	0.0031	0.24	11.6	3.0	2	19	491	508	491	512	0.95
9	15	0.00015	0.012	15.7	3.5	3	23	520	540	518	540	0.97
10	15	0.011	0.85	9.9	0.1	3	23	547	567	546	567	0.97
11	15	6.5e-06	0.0005	20.1	0.4	1	23	576	598	576	598	0.98
12	15	0.0028	0.21	11.8	0.2	3	23	606	626	604	626	0.97
13	15	0.0025	0.19	11.9	0.2	3	23	634	654	632	655	0.94
14	15	0.34	26	5.2	0.0	1	23	669	691	669	691	0.93
15	15	0.002	0.15	12.3	0.0	1	20	1072	1091	1072	1094	0.94

Sequence Information

Coding Sequence: ATGGATGTTACTGGAGATTTAGCCCTCCAGTGGGTGGAGGAGGTGGGTAACGTAATACACGAAGAAGTAATATGTGGCTTGGAAACAGAACTAGTGGCTCCTGAAGAAGAGGTCATTGGAGCCTGTGAAGAAGTTACAGTTGAAGAAACAGTAGAATCAGTACCTGTCCCTGAATCTGTGGTTGATTCAGAAATTCTGATGGTCCCTCAAACTAGTGATATGGaatctatatatatagttCCACAAGATCAGGGTCACGATTATCTCAACATACAAGTAACGGAAGAAGTCATCACCGATAATTGGGATAGATCAGGACCAGAAGATGGCATCGAAATAACAGATACAAAAGTTCCACATGAAAATTTACTGGAATATGATGACATGGAAATACCTTTACCAATTGACCAAGATTCATATACAAATACTCGACCATATCCATGCGATTTCTGTAGTAGAAGATTCAGGAAAAAAGCAAATTTAATGAATCATATGGTTGCTCATCAAACTGATCGCCCCCATGGCTGCAATCTCTGTGGAGCTCGTTACGTCAGAAAGTGCGATCTTATGAATCATCTGAAAATACACGCATATGCTCCACCAAGAGAAAGTTTGGAAGATGATTTGAACGACGATGACTTATTGCAAGCAGATGAAGAGGAAACACATAAAGGCCGTCGTAAGAAAGTACAATCGAGTGCACcacggaaaaggaaaaacaatgCTGCAACTTCCAAAAGAATGTCCGAGGATGCAAAGGATTTGGGCAAGTACGTTCATGAATCATCTGATTATGTTGATTCAGATATGGGTCTCTTGGATGAGATGACCACTAGAATTTCTGATCATAGCAGCAACTATGCTTCCACTTCAAGATGGAATGATCAAATGTCACCTGTGGCAAACGAATCCCAACCTCCACGCTGGCCTATTACGGATCCAACTAAGCCGTATGTATGCCAATTTTGTGGAGTTGGTTTTGCACGAGAAAAAGCTCTTGCATCTCATTCTCGTATACATGGTGGAGATAGCCCTTTTGAATGTACTTCTTGCGGTGAAATGTTTTGGGATGTTACCAGTTTACGGGAACATATTAGGGTTAAACATGGAGGTACTATGCAATCAGATGCTGAAGAATTTGACAATGATGCCACTTATACGGGTGACGAGAAATTTGgagatttttattgtaataccTGTGGTGTTCCGTTTCACCGTTTGGATTTATTGAAGCGTCACCAAAAAATTCACGTAAAACAAGAAGTTGACGTAATGGAGGGATCGAGCCAACACCATGTGTGCAATGTGTGTGGAGAATGGTTTGAAGAAGCATTAGCATTACTTGCTCATGCTGAGCTTCATGCTAGatcgCCAAGTCGTCGATGTCTTTTATGCGGCGAAAGATGCCGTGACGATGCTGAAGTAGCAGAACACGTTAGACAGAATCATGCCGACGATGCACCACCAAATACATGTACTCTTTGCGGGAAAACTTGCAAAGATAAACGTAGTTTATTGAAACATTCGTGGGTTCACAATGTCGATAAAACATTTGGATGTACAAAATGTGGAAAACGTTTTCACAGTAAAGCTAGGCTGCGAAGacACATGGTATCACATCGTAATAAAATGGTTGCATGCGATGAATGTGGTGAGGAATTCCCTGATGGCAGAGCACTGGTCAGTCATCGTCATTCGCATAATAAAGATTTAGGAGGTCGTTCATTCCCCTGTCGCGAGTGCGGAAAAACTTTCGGTAGCCGTAGTTCTCAACAAATTCATATTCGTATACATACTGGAGAGAGACCGTATGGTTGTCGTTTTTGCTGGAAAGCATTCGCTGATGGTGGAACACTGAGAAAGCACGAACGGATTCATACTGGCGAGAAGCCGTATGGATGTGCAATATGCCCACGAGCTTTCAATCAAAGAGTTGTATTACGTGAGCACGTGCGTGCCCATCATTCTGGGCCAGATCCAAAATGCGTTGGTAGCGTGACGCCATATTTGTGTAAAGTTTGTGGCGATTCTTACGGCACATCAGAAGAAATTGTAGCTCATATTGTACAGCATTGCGACGATAACACTGCTTTGAGACGTCAGCCACAAACTGGACCACGCAAATATAAAAGAAGGCGTAAGCTTAAACCGCATGAAACGACACCTGTTATGCGTATGAGTGAACAATACGATATGTTTGATGAGAACTCCGATTCGGACGACAATACAAAGAGAAAGCTTGGAAGAAAGAATAAACAACATAGATCAAATGTAGAAGAAGGATATCAAAATGTGCTAAAAAGTTTCGAGAGCTCGTTACAGAATATCAACTCGATTGTGAGCAATTCTAAAATGAATCCGGCTAAATCTAAACTCTCAAAAAAGAAACTCAAAAAAGAAGATAAGAAGAGCGAGGGACAATCGTCATCTCAACCGGGTAGACCAAAAATGATTCATACCCAGAAAACAAGAGTGCCTGTAGAAATTGGTAGCGACGGTGTTAAAAAAGGACAGAAAACAAAAACCATGGTAACTAGAACTCCAAAAGTAATGccaaatgataataaattaggTATATTCCCTGGTGGTGAACGAAACAGACcaagaacaaaaaatgttaGTTATCATATCGAAGGAAAACTGCAATTAATGCCTGCAACATTCCCAAAAGTAAGAGACGATTTGGAACCAAAATCTCCCCCTTCTACAAATCAACATTCTTTAAGAAGTGTTAGATTTGACATGACTCAAAGAACTTCCAACGAtagtcataaaaataataatggcaATATAGTTGacattaataatgaaaaaactgAATCTTCTAAAAAACGAGCTACTCCACTAAAACGTTCAAGAAGGGTGAGACAGCAGTTAGCAATTAAACAAGAAGTGCTTGATAGTTCAAACGAAGAAGGAGTgcgaaataataacaacactGAAAACGACAATACTTCGGATATGATGGAACAGGTTGTAGACCATAATGATATGGGGGCTGTTTTCGAAGCAAGTGCGGTTTCATCGCACGAGGAAAGCATTTTATCCGACTTGAAAAATATGCACGCAGATGAGGAGATAGATAACAGTAATGTAAAACTAAGCGTCAAAGTTGAGTCAACAACATCACAGAGAATATTATCTATTCACGGTCATAGTGTAATTACACCAATTGACGATGTTCCAGAAACCATTATACCAGATGCTGTTGAATATACATGTGAAATGTGTTCTGCAGTATTTTCTAGCCGCGCTGAATTATTGGTCCATGTACCAATACATATTTGA
Protein Sequence: MDVTGDLALQWVEEVGNVIHEEVICGLETELVAPEEEVIGACEEVTVEETVESVPVPESVVDSEILMVPQTSDMESIYIVPQDQGHDYLNIQVTEEVITDNWDRSGPEDGIEITDTKVPHENLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLMNHLKIHAYAPPRESLEDDLNDDDLLQADEEETHKGRRKKVQSSAPRKRKNNAATSKRMSEDAKDLGKYVHESSDYVDSDMGLLDEMTTRISDHSSNYASTSRWNDQMSPVANESQPPRWPITDPTKPYVCQFCGVGFAREKALASHSRIHGGDSPFECTSCGEMFWDVTSLREHIRVKHGGTMQSDAEEFDNDATYTGDEKFGDFYCNTCGVPFHRLDLLKRHQKIHVKQEVDVMEGSSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGERCRDDAEVAEHVRQNHADDAPPNTCTLCGKTCKDKRSLLKHSWVHNVDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCVGSVTPYLCKVCGDSYGTSEEIVAHIVQHCDDNTALRRQPQTGPRKYKRRRKLKPHETTPVMRMSEQYDMFDENSDSDDNTKRKLGRKNKQHRSNVEEGYQNVLKSFESSLQNINSIVSNSKMNPAKSKLSKKKLKKEDKKSEGQSSSQPGRPKMIHTQKTRVPVEIGSDGVKKGQKTKTMVTRTPKVMPNDNKLGIFPGGERNRPRTKNVSYHIEGKLQLMPATFPKVRDDLEPKSPPSTNQHSLRSVRFDMTQRTSNDSHKNNNGNIVDINNEKTESSKKRATPLKRSRRVRQQLAIKQEVLDSSNEEGVRNNNNTENDNTSDMMEQVVDHNDMGAVFEASAVSSHEESILSDLKNMHADEEIDNSNVKLSVKVESTTSQRILSIHGHSVITPIDDVPETIIPDAVEYTCEMCSAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01424531;
90% Identity: -
80% Identity: -