Basic Information

Insect: Goniozus legneri
Gene Symbol: -
Assembly: GCA_003055095.1
Location: NCVS01000383.1:50359-54292[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.038 2.9 8.2 4.2 2 23 238 260 237 260 0.96

2 20 0.79 61 4.0 1.3 1 23 310 332 310 332 0.92

3 20 0.0075 0.58 10.4 0.7 1 23 381 403 381 403 0.98

4 20 0.0026 0.2 11.8 0.4 3 20 454 471 453 473 0.94

5 20 0.0048 0.37 11.0 2.8 1 23 485 508 485 508 0.94

6 20 0.01 0.78 10.0 1.0 3 23 515 535 515 535 0.96

7 20 3.9e-05 0.003 17.6 1.4 1 23 578 600 578 600 0.97

8 20 0.00039 0.03 14.5 0.1 1 23 606 628 606 628 0.97

9 20 7.2e-06 0.00056 19.9 1.2 2 23 671 693 670 693 0.96

10 20 0.014 1 9.6 1.9 1 23 699 722 699 722 0.94

11 20 8.1e-06 0.00062 19.8 0.8 2 23 730 752 729 752 0.95

12 20 0.0013 0.1 12.8 0.8 1 23 759 781 759 781 0.96

13 20 0.07 5.4 7.4 0.1 2 20 805 823 804 823 0.94

14 20 0.00038 0.029 14.5 0.1 2 23 843 864 842 864 0.96

15 20 2.2e-05 0.0017 18.4 1.1 1 23 878 900 878 900 0.97

16 20 0.004 0.31 11.3 2.4 1 23 921 944 921 944 0.90

17 20 0.024 1.9 8.8 1.2 2 23 980 1002 979 1002 0.94

18 20 0.011 0.84 9.9 2.2 3 23 1027 1048 1026 1048 0.91

19 20 0.21 16 5.8 3.9 1 23 1108 1131 1108 1131 0.96

20 20 0.0047 0.36 11.1 0.2 2 23 1161 1183 1160 1183 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.038	2.9	8.2	4.2	2	23	238	260	237	260	0.96
2	20	0.79	61	4.0	1.3	1	23	310	332	310	332	0.92
3	20	0.0075	0.58	10.4	0.7	1	23	381	403	381	403	0.98
4	20	0.0026	0.2	11.8	0.4	3	20	454	471	453	473	0.94
5	20	0.0048	0.37	11.0	2.8	1	23	485	508	485	508	0.94
6	20	0.01	0.78	10.0	1.0	3	23	515	535	515	535	0.96
7	20	3.9e-05	0.003	17.6	1.4	1	23	578	600	578	600	0.97
8	20	0.00039	0.03	14.5	0.1	1	23	606	628	606	628	0.97
9	20	7.2e-06	0.00056	19.9	1.2	2	23	671	693	670	693	0.96
10	20	0.014	1	9.6	1.9	1	23	699	722	699	722	0.94
11	20	8.1e-06	0.00062	19.8	0.8	2	23	730	752	729	752	0.95
12	20	0.0013	0.1	12.8	0.8	1	23	759	781	759	781	0.96
13	20	0.07	5.4	7.4	0.1	2	20	805	823	804	823	0.94
14	20	0.00038	0.029	14.5	0.1	2	23	843	864	842	864	0.96
15	20	2.2e-05	0.0017	18.4	1.1	1	23	878	900	878	900	0.97
16	20	0.004	0.31	11.3	2.4	1	23	921	944	921	944	0.90
17	20	0.024	1.9	8.8	1.2	2	23	980	1002	979	1002	0.94
18	20	0.011	0.84	9.9	2.2	3	23	1027	1048	1026	1048	0.91
19	20	0.21	16	5.8	3.9	1	23	1108	1131	1108	1131	0.96
20	20	0.0047	0.36	11.1	0.2	2	23	1161	1183	1160	1183	0.94

Sequence Information

Coding Sequence: ATGGATGAGGTGgttgaagttgaaaaaaaagtgcaaaaGGTTTGCCGATTATGTCTTTCTTCGGATGAACCGAGTGCGTCGATTTTCGAAGAAGGAAAGTCAGCATCGTCATTGGTTGATAAAATACAAGCTTGTTTATCAATTAAGGTTACTGTCACCGATAAGTTATCTACTCGAATATGTGACAACTGTACTAGCGCTGTGAGTAAGTGGTATGAATATAAGCTGTCATGCTTAAAATCCCAAGAAACTCTTAATTCATGGTTAGCAGATGAGCAACATACAACGTCAACAGTAGTGACTATTAAAGAAGAACCAGTGGATTATGAAATATCCAATGATGCTGAAATTGTGTCTGTCAGAGATGAAACGTCAGAGattatTCCTCTTGATTCGCCACCTGATGATACCGAAAATACTTCTCAAATAGTAATCAATGAATCAGGAAAGGAAGTTGATAAACATCAAACCTCTAGTGCATTATCTGATACCCTAGGTTTGagtaatattaaaactgaGCCGATAGATGAATCTGACACTGATTACACAATCGAAATTGAATCTGTCACATCTAATTATGTTGATGACAAAACTGACAATGTGGTCGAAGCTGATTCCACTCAAAAATCCAATACAGGATCAGAGgccaaaagaaaaaaatatagacaaGGAGTGCAGAGTCATTACAAAACTCCacaaatatttaagaaaaaatgtcctaattgtaatatatttttacattcaaaGCGCAGTTTCACAAGACACATGGAAAAATATCATGGAAAATTATACAATGTCGAAGCTGATGAAGTCGGAATGGAAGAGGATGAAGAATCTGTCGAAGATCTCGAAGCAGAGTTGGCTAGCATGGAGCAGGAGACGTCGCTTACTCAGGTTCAGCAAAATATCATAAGCCAATTGAAAACTTTTAGTTGTTACGCTTGTCAGAAAACATTCGACGACAGAAGAATTACCCTCAATCACATTAGACAACATATGCCTGATTTAAGACCGTATACTTGTATAGCATGTTTAACAGAATTTCCTGACAGAGCAATGTATAAATTACATTGTACAGCATCCTTCGAATGTGCCATGAAAATCGCTTTGGTAGTACCTAACCATGGTGAGGAAAAATACTTCACTTGCAACATGTGCTTGCAAGCTTTATCAAGTAGGAAGGAATTACTTAGTCATTTGTCAAAACATTCTGACAAACAGTACGAAGAATTAATGTCACCTAGCGCGTCTTCACCCAAACCACTGTCAAGATCTGCTTCGGACAGATCTTCGAGTTCAACgattaattcttcattcaaagGCCCGTTCAACGGTGGGGATCcgatttacaataatttatgCGAATTATGTGGCATGATTTACAAGCACAAGTCGAATCTCGATAAACACAAAGAGCTTTGCACGAAACTTGAACCAGAAGTGAGGACTTGTTTCAAGTGTAGTCATTGTGGTAAAACATTCcttgttttcaaaaaattacaaaatcatGTAGTAACGGAACATGGCACGAAAGAGATCGGTTGCGTTATTTGTAACATAACATTTCGCTCgccaaaagaatttttgagCCATCACGAGGAGCATCGTCAATCGAGGCTCCAAGGGATGGAACCGGAATCAATTGTTTCCAATTCGGAGATTAAGGCTCCCGAGATGGTATCAGAAACTTCTATGGAAGTGAACAGTTTGAACGAGACTTCTGAGGAAATTCACAAATGCGCTTTGTGTAGTGAAGTATTCTCCTCAAAATCAGAATTGACTGAACACAGGAATCTCcatttgaaagtaaaaatatattcgtgTGTTATCTGCCGCAGCATGTTCAGTAACGCGGGTGCACTAGAAATACACATGAAAGACCATGGCATCTTGGACCCGAATGAGCAAAACGCAAACATCTCCTACGTCGAGTATGGGCAATCTGAGGACGAGTCGGACTCCGAGATGCTCAATTCCACAGAAAAACCCAAATCTGCCTCTGGCAAGAAATCCTGCAACATGTGTTACAGAGTATTCTCAAACTACGCAAACCTTAGAAGACATTTGCGTAACGTGCACGAAGGGAATAGTCGTTTTCCATGTTCTCTctgtaaaaatgtattcaaCTCCATGCATCAGCTGGAGAATCATTCCAAATACGTCCACAAGACTATGAGACAGCCACTCAAGTGCCCTCACTGTCCTAAAACCTTCGTGTTCGCGGCCAATTTAGAGAATCACTTTCAAAAAGCTCACGGTGGGGTCGAACAGGATTTCACGTGCGATATTTGTGGCAAAAAATGTAGCGACGAACTACCGTTGAAGATTCACAGGTCGTGGCATTTCAGGAACAATTATCGCTACAATAACATCAACCCTCCCCAGACACCATCGCTGGCAGCGAAGAGCCTTATCTGTCGCGTGTGCAATCAGCAATATAGCGACGTCGAGGCGCTGAAGAAACATCTATGGGACGTTCATTGCGCTCGCCACAAGCAGGAGAAGAGCCTGTCCGATAACGAATTGCAATGCGCACTCTGCACGTACGTCTTCCCGGACAGCAAGTCTCTGGAGACTCATCTTCAGTGGCACAAGGCCAACCCGATCCTGAGCGACACCACAAAGATGAGCTATTCTTGTGAGATATGTGGAAGGACCTACAGCTCGAAGAAAGTCCTCTGGAAGCACAAGAAGCTGCACAAAGCTACCACAAAAGCCTCGGCACTGCAGCTTCATTCGATCATGAAGAAACCACTACAGTATTCATGTCATGTTTGCAACATAACATTTGCTTCCGTACGATCTCTACATAGGCACAACGCTAACTCTCACACAGGTGCCAACTACAGTCGCACCCAACCGCCAGCAAGTCTGTCCATGACGAATTCTGAGGAGGACGTCAAGTCGAGTCAGATCCGAACTGGAAGGAAGCCTGTCAAGTGCCACGTCTGCAAGAGGATCTACGCCAACATGAGCGTGCTCTACAAGCACAAGCAGCTCGTCCACAAGGTCAGGAGCCTCCCTGGTAAACAGACGCAAGAAGTTGTTGCAGTTCCTGGGCCGAACGGCAGGGTTGCTTGCAACGTTTGCCGCAAGCAGTTTAGGGCTCTGTCACATCTTAAACAACATTTCTCTCTGATGCACAAACTGGGCGGTCGGTTCTATAATCGGCGAGTTCAGCAACCAAGCGTTCAACGCGAAAACCCGATCCCTGTTCAGATACCCAGCAACAACGTTCCAGTTCCAGCAACACCCACTCCTGTCGAACCTACTCCGGTTAGGACGAGAAAATCGGAGCTCAACACGTCCAATATGATTATCTACACTTGCGTACTCTGTCATCGACACGTTTTCAGCTACCCGTCCTTGATTCATCACATGACAGTCGAGCACAAGATTAAATATCCCCAGGAAAATGGAAACGAACTTCACAGGGAAACGGACCTGTATAATTACTACGTGGACGGTGCTGAAAACTTGGTCTGCCCTGTCTGCAAGGTCAAGTATCCCAACAACAGGGCGTTAAAAATACATTACTTCAAGGTCCACGATTATGGGCAAGTCTGA
Protein Sequence: MDEVVEVEKKVQKVCRLCLSSDEPSASIFEEGKSASSLVDKIQACLSIKVTVTDKLSTRICDNCTSAVSKWYEYKLSCLKSQETLNSWLADEQHTTSTVVTIKEEPVDYEISNDAEIVSVRDETSEIIPLDSPPDDTENTSQIVINESGKEVDKHQTSSALSDTLGLSNIKTEPIDESDTDYTIEIESVTSNYVDDKTDNVVEADSTQKSNTGSEAKRKKYRQGVQSHYKTPQIFKKKCPNCNIFLHSKRSFTRHMEKYHGKLYNVEADEVGMEEDEESVEDLEAELASMEQETSLTQVQQNIISQLKTFSCYACQKTFDDRRITLNHIRQHMPDLRPYTCIACLTEFPDRAMYKLHCTASFECAMKIALVVPNHGEEKYFTCNMCLQALSSRKELLSHLSKHSDKQYEELMSPSASSPKPLSRSASDRSSSSTINSSFKGPFNGGDPIYNNLCELCGMIYKHKSNLDKHKELCTKLEPEVRTCFKCSHCGKTFLVFKKLQNHVVTEHGTKEIGCVICNITFRSPKEFLSHHEEHRQSRLQGMEPESIVSNSEIKAPEMVSETSMEVNSLNETSEEIHKCALCSEVFSSKSELTEHRNLHLKVKIYSCVICRSMFSNAGALEIHMKDHGILDPNEQNANISYVEYGQSEDESDSEMLNSTEKPKSASGKKSCNMCYRVFSNYANLRRHLRNVHEGNSRFPCSLCKNVFNSMHQLENHSKYVHKTMRQPLKCPHCPKTFVFAANLENHFQKAHGGVEQDFTCDICGKKCSDELPLKIHRSWHFRNNYRYNNINPPQTPSLAAKSLICRVCNQQYSDVEALKKHLWDVHCARHKQEKSLSDNELQCALCTYVFPDSKSLETHLQWHKANPILSDTTKMSYSCEICGRTYSSKKVLWKHKKLHKATTKASALQLHSIMKKPLQYSCHVCNITFASVRSLHRHNANSHTGANYSRTQPPASLSMTNSEEDVKSSQIRTGRKPVKCHVCKRIYANMSVLYKHKQLVHKVRSLPGKQTQEVVAVPGPNGRVACNVCRKQFRALSHLKQHFSLMHKLGGRFYNRRVQQPSVQRENPIPVQIPSNNVPVPATPTPVEPTPVRTRKSELNTSNMIIYTCVLCHRHVFSYPSLIHHMTVEHKIKYPQENGNELHRETDLYNYYVDGAENLVCPVCKVKYPNNRALKIHYFKVHDYGQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -