Gleg005415.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- -
- Assembly
- GCA_003055095.1
- Location
- NCVS01000088.1:242582-250309[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.4e-05 0.0011 19.0 0.9 1 23 216 238 216 238 0.98 2 30 0.0021 0.16 12.1 1.8 1 23 261 284 261 284 0.96 3 30 0.00012 0.0088 16.1 0.5 2 23 291 313 290 313 0.96 4 30 0.00086 0.066 13.4 0.6 1 21 335 355 335 356 0.95 5 30 0.00061 0.047 13.8 1.0 2 23 451 472 450 473 0.93 6 30 0.0017 0.13 12.5 0.8 2 23 480 502 479 502 0.90 7 30 0.0001 0.0078 16.3 0.1 1 23 567 590 567 590 0.96 8 30 0.0041 0.31 11.3 0.5 1 23 596 619 596 619 0.96 9 30 0.053 4.1 7.7 0.8 1 23 632 654 632 654 0.97 10 30 1.8e-05 0.0014 18.7 2.7 3 23 699 720 698 720 0.97 11 30 0.0056 0.43 10.8 1.4 2 23 782 805 781 805 0.94 12 30 2.7 2e+02 2.4 0.0 2 23 814 836 814 836 0.84 13 30 0.0016 0.12 12.6 0.1 2 23 843 865 842 865 0.95 14 30 2e-05 0.0015 18.5 1.2 1 23 873 895 873 895 0.98 15 30 0.46 35 4.8 1.3 1 23 930 954 930 954 0.95 16 30 0.00021 0.016 15.3 1.6 1 23 957 980 957 980 0.97 17 30 0.12 9.3 6.6 0.6 2 23 987 1009 986 1009 0.95 18 30 0.00078 0.06 13.5 3.9 1 21 1036 1056 1036 1057 0.95 19 30 0.0023 0.18 12.0 1.8 2 23 1071 1092 1070 1093 0.93 20 30 0.4 30 5.0 1.4 1 23 1096 1119 1096 1119 0.94 21 30 0.0013 0.098 12.8 0.6 2 23 1126 1149 1125 1149 0.93 22 30 2.6 2e+02 2.4 0.2 2 23 1157 1179 1157 1179 0.94 23 30 3.5 2.7e+02 2.0 0.0 2 23 1186 1208 1185 1208 0.86 24 30 0.19 15 6.0 2.7 2 23 1217 1239 1217 1239 0.96 25 30 0.97 75 3.8 0.4 2 23 1245 1267 1245 1267 0.91 26 30 1.7 1.3e+02 3.0 0.5 1 20 1334 1353 1334 1357 0.86 27 30 0.01 0.77 10.0 4.0 1 21 1387 1407 1387 1408 0.94 28 30 0.42 33 4.9 1.3 2 23 1510 1532 1509 1532 0.94 29 30 0.59 46 4.4 2.5 1 23 1572 1594 1572 1594 0.97 30 30 2.5 1.9e+02 2.5 0.4 3 20 1603 1620 1601 1620 0.94
Sequence Information
- Coding Sequence
- ATGGAGCAACAGAATCAGTATTACGATCTGTGCCGTTTGTGCGCCTCCTACGACGCTGTCAAGATGGATTTATTCGGTAAGGACGGACGTAGTCGTCAGCTCGTGGAGAAGATACAGACGTGTTTACCATTCAAGATTCAGGAAGATGATCGCCTGCCAAAATGTTTGTGCTACAGGTGCATGTacaatctcgaaaatttctttgactTCAGGACAGCTTGCGTTAATGCTGTTGCAATGCTTGAAAGatttttacaagaaaatgGAATGAACCAAGAGGATTACAAAGAAATCAATAGACAATTTAATGATATCAGTTCTAGAAATATTAGAGATAGAGTTAAAATGCCAATTTTGATCCCAGAAGCACCTGTTGTCAATCCAAATGCAGCTCTTGGTACTCCACCAAGACTATGTTTTGACGATAATGATGTAGAggaaattgttcaaaatagtGGCACGGATGAAggGCAAGAAGAAGTCGAGGATGAATATGAAATGGATATGGAAACCAATCCAAGTGATTTCTTAGAAATGACTCCAATGGTAACAGGAGAATCCGAAGAAAATGATTCAAAGAATGTTGTTAACGAACAACAGGATTCTCCAACTGTATTCCAACACACATCCGAACAGCATGAGGTTTATGTATGTTCTCTTTGCAGTAAGGCATTTAGTTCTAAAGGCCACTTATCGCTTCATGCAAGGATACATGTGGGTGCTGGTGATGTAATCGGCGAAAAAGTCATAACGGACGATCATACCTCTTATAAAAGGCCTTATCAGTGTGATCTTTGTAACAAATCTTATTCGACCGCGAAACATCGTTGGGGTCATGTATCAACGAGTCACAGAGGACATCCAGCTGTTACGTGCGGATATTGCTCTCGTATATATTCAACGCGTACGAATCTCGAAGAACACATCAAATCACGACATGCAGGTATGCCTGCGTTGTCGGAAGTAGctacaaaaaatcaatttagtCGCACAGAAAACAGATTTCAATGTAAAACATGCCCAAGGATGTACACTAATATAACAGACTTGAACAAGCATAGTCGACTCTGTACAGGGGAACAACGAATAGAACTTTCTAATAAGAATCCTATTCAGAAAGGAAAGGGCACACCTGATATTTCAGATTTATCTAGTATAGATTCGGATAGCGAAAACAAAGATTATAAAACGGCAGAAGcaaaattgtcgaaaaatcCACAACTCACGATACTCAAACAAGCTCTAACTAAGGGTATTAGTATAAAACAAGAGCTTGATGAGAAATTGAGGAGAACAAAcgtaaataatacaaatagagTTCATTCTGATTCTGGGGTACAAAGTAAATTGACTTGCACCATTTGTCACAAAAATTTCGCATCTGCCGCACTTCTTGAAGAACACGAAACTATTCACCATTCGGACGAAGATTCATTCAATTGCATATTATGCAATAAAGACTTCACATCAAAATCTCTACTGAGTAACCATATCGTGACTTCTCACGGGGTAGACCCCGATCCTATTTTGAAATGTCAAAgtaacagaaagaaaaaagtggaaaaagcGCCTTGTCAGCAAAAAACAgacaaaaatgaaactaaagTTCCTGCCATTATCCCTCCTGAGGTGAATGTAGTAAATGATGCAGAAAATAGAGAGACTAATCAGGATAATATGATTGAGATCGAAACGGTATTTGTATGCGAAATATGTACACGCGATTTTAATGACAGAGCATCTTTATGGTTGCATATACGAGCCACTCATAAAGAATTTGCTGCTTTTGCATGTGGGGTTtgtctgaaaatttgttctgaTAATTCGCAGTTATTAGATCACGTAAATATGTATCATGGTGGTTCAAAACTACAAGTATCGGAACAAAgaagatacaGTTGCACTATTTGTGGTAGACAACatgattcgagaaaaaaattgattgctCATGTATCAATTCATAATATTGATCCAGCTTTTGATGCTGCTAATTTTGTTCAGTTGAACACCAGTTATTACAACGAAGCTGCTAATAacgttgaaaataatgatcaaataattgattttgatGCAGAGGAAAATGATAAAGTAGATTGtcatatttgtttcaaatcgTTTCCAAATGAAGATCATTTGATTCGTCATCAGAGAAATGCACAtaaaGGTGAGCAAATGTCTACAAGTGGAGATCCTAATGCTaatggaaattcgaattcaaatGGCAATGGAAATAAAGCGCagtatcatttatttttcgtatgcGAATTATGTGGCAGTTCTCATCCAAGCAAGTGGGAACGTTGGTTACATGTGAGCAGCGATCACGTTGATGAACCTGCCataaaaTGCGAGAGGGACGATTGtggcaaaatattttcaaccaAAGCTCTGAGGAATGAACACACACAACATCATCTACTTCAAGGTTCTTCACCAAACACGTGCGAAATTTGTGGCAAATTATGGGGCAGTCGGGTCGATTATTGGAAACACGTTATGGGCGTCCACTCTGATATGGTACCATTAATTTGCGGCGTTTGTTTAAAAGTCTTTCCAGACGTTTTTAACTTGAATGCACATGTGAAAACAAAACACTGGCCACTTACAAATGGAGATTTTAGTTGCGATGTCTGTGGTCGGCCATATTCCAATAAATCCAAAATGTCAAGACATCGAAAGATTCATGGTATCGAGAGCAATGGTTTTGATGCTACTGGTTACGATTCAACCGTACCCAGCACGAATGAATCTTGCAAACTGGACAGTACAGCAATTGCAGAATGCGACTTTACCTGTACTATGTGCGACAATGTCACGTTCTTAAACTTGGATGATTTGTGCAATCATCGACGTGTGGTACATGGCCTTTTCCCATGTGATTTATGCAACAAGTTTTACGGAAGAACTTCTCATTTATGGAAACATGTCAATCGTGTACACAAAGGCCATAAAGACGTGACTTGCCGTTTCTGTATGAAGACCAGTGCTTCGAGAGACCACTTAGCAGCTCATATAGCCAAAATTCATCGATATGAGCCAGAAGTTAGAAAAATCACGAAAGAGGAGAGTACTATGAAACCGGAAACAGCAGAAGATAATTTTATGCATTActgtgaaaaatgtaacaagGGTTTCCACAAAAGATACCTTCTTAGAAGACACATGAAGGGGTGTCAAAATTACAGAAAAGATCCAGGAGCGTTACTGACGAGATGCCGTGCTTgcgaaagaatatttaaagatCGAGCAAGTTTACAAAAACATATAGAGAACCATCATAGTACATATACATGTCACCTTTGCAACGAAACAATTACCTCAAAATTAGGTATTATGACGCACAACAGAATCAAACATATGAATCATCCCGATCTGACGTGCGAGTCTTCTGGGTGTAAAAAGTTATTCCGAACGAAAGAAGATCTCGAGGCACATAGGAAAGATCACAAGTACCATAACAATCCAAATGTATGCGACTTCTGCGGAGACACTGTTGAAAATAAGCTTAAGCTCAAAATGCACGTGTTATCTTTGCACCGTAATGAAATTGGCGTATCCTGTGGGGTTTGTTTAATACCTATGAAAGATCCTAAAGATCTGAAAAAACACGTAGCCGACGTTCATGGAAGCGTATTATTGAAACCTAATACATGCCAGGTGTGCGGTAAACAATATGCTTCCAAGTGGAAAGCATTCGATCACACGAAAAAGTGCCATGGCAAAGTTTTCCGTACATGCAAGCAATGCCTTGCTGTTTTCACAACAGATGCTGAAATTCGTCATCATTACGAAGAAGTTCATAATGTCCCAAATGACCAATTAGCTGcttttgaacaaaaaatggaaattggTTCAAAAGCCGACATGTGCGACGATCCTAAACTCAGGGAATCTTTGGAAGTAGTAGTCAAAGAAGAACCAGAAGATTTGGAATATTGTGAAGAACAGTATGAAGAGAATTACAACTCAACAAAACGTAAAAGAACGTCAATGGATACTTATGATTGCGAAATGTGTccggaaatatttttgaatttagaGACATTAACCGAACATTGCAAAAATGTTCACAACGTTGATCCTTCTATAttgctgaaaaaaatcaaactcgatacaaattcttcaaaatcaaCACGAAAAATGCGTAATCGTAAAAACTTCGAGTGCAAAAGCTGCAAGAAACAATTTTGCACAAAAACTCTATTCTGGAATCATATCACTACCTGTACTCGACGAAATCAATACAACAAAACAGATGGCTCGGGTGTGCCGACCACGTCCATTCTTGAAAATCACTTGAAAAACAACAATCAAATAAAACGCGAAGTCGATGCCGACGTAACGATGAACGAATCAAACCTCAACATTccagattttaatttattcgaagaCATTAATATGCAGTTAGCTGGGGTAAAGCCTGTGCCAAATTTGGTTTCAGTAATGCCAGCAAAAGGTTCCGGTAATGTCAAATGCTCAAGGAAAGACTCGCGCAAGGTTTACGACGAAACAACCAACACCGAATGTGCATGCGAGGTTTGTGGTAAGCAGTGGCCAGCTAAGAAACATCTTTGGCAACATCTAATTCGCTTCCACCGTGCGGAAGCAGCCGTAACGTGTGGCGTTTGTCTGAAACTCTGTAAATGTTACGACAGTCTGGCTGAACATCTCAAAGAAGAACACGGAGCTATACTATCTTGCGAGGGTAACAATTTCACGTGTAAAACTTGTGGAAGATACCACAATGCACGTAGTAAGCTGTTGCTTCACATGAGTATCCATATAAATCTCAATGGTAATTACTGGTGTCAAAATTGTCAGAAAAACTACGATACCGAAGAACGTTTCAACGAGCACCAGCCTTCTTGCGTGAAGGAGGTGAGTACCAAAAAGACAGTCGAATCTTCGAACGTTCTCAACGATACGAAAGGCGAgcaggaggaggagaaggaggagggcAGTTTGATCGGTGACGAGGCGAGCGCGAGCGGCGAGATGGAGGAAGAAATGGTGATCGATGAGGAATTCGATTCACAGGCCGAGGGTGACGTCGAAATGCAACCGGAAACTAATACTGACGATAGCGAAAACAGCGAAGAAAATACTGCAGAATCTGACGCTGAAAGTAATACCGGGACGACCGACGAAACCGCGGACGAGAACGAAATGAGCTCGAGGACGGATTTGGAGTCTCGATCCAACACCCCCGAAGGCGTTTGCCAATCGGAAAGCGTCGATTCAGAAACGGAAAATTCCGATAAATTTGATGAGAAGTCTCACAGTGACAACAGCAATCATTTTAATGCTAGATCTGAAAGTCCTGAAGAAAAGGATTCTGTGATCAAGAACGTACAGCATCCAGCATCCGACAGTGACGATCCTCAAATGAAGATTGAAAAAGTCGATTGCGAATCGACTGATGATGAAATTGACGAAGAGGACGATGACGGTCCTCCCGTCCTCAGCCCCAACCCGCCCATAAAAATTGGCGATGAGGTTGAGGAGAACGAGGAATCTGGTAAAATTCAACACAGACTCGTTCCAATGATGTCATACAGCGACGAccaagaggaggaggaggaggaagaggaggaagaggaggaagaggaggaggcggaggaggcggaggaggcggaggaggaggaagaagatgaagaaaacgagaattttGTCGAGGCGAAAAATCAGGATTTAGATGACGAGGACGTGGATTCGGAGTATGGAAATGGTCAATTGGAAGTCGTTGTCGAGAGCAATCCTGAGCAGGAAGAAGAGGGCGAAAATTCTAACGAACCCAGCATTCAAGACGAGGAAAGTGGCGAGATTCAGATAAACGGCGAAGATGGTTCATACGTTGTTGCCAATGATATAGATGgcaatcaaattttgatacaGTCCAACTTGTTAGAGCTTAACGAAGATTCGAACGGTGAAGGGCAGGAGTACGTGGCAAACTATCAAGATGGTAATTATTACGAATTAGAAGAGTATCAGGTGAAACAAAACGACGGGGAAGAAGAATTAGAGATGGAGGTGGATCAAGAAAATTGTTCcgacgaggaagaggaaacTGTAGAAGAGGAATTTAGCAATGCCGAAAAGTTAACCGCTAGTGCCAAAAGTCAATAA
- Protein Sequence
- MEQQNQYYDLCRLCASYDAVKMDLFGKDGRSRQLVEKIQTCLPFKIQEDDRLPKCLCYRCMYNLENFFDFRTACVNAVAMLERFLQENGMNQEDYKEINRQFNDISSRNIRDRVKMPILIPEAPVVNPNAALGTPPRLCFDDNDVEEIVQNSGTDEGQEEVEDEYEMDMETNPSDFLEMTPMVTGESEENDSKNVVNEQQDSPTVFQHTSEQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTSHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGMPALSEVATKNQFSRTENRFQCKTCPRMYTNITDLNKHSRLCTGEQRIELSNKNPIQKGKGTPDISDLSSIDSDSENKDYKTAEAKLSKNPQLTILKQALTKGISIKQELDEKLRRTNVNNTNRVHSDSGVQSKLTCTICHKNFASAALLEEHETIHHSDEDSFNCILCNKDFTSKSLLSNHIVTSHGVDPDPILKCQSNRKKKVEKAPCQQKTDKNETKVPAIIPPEVNVVNDAENRETNQDNMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNSQLLDHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLIAHVSIHNIDPAFDAANFVQLNTSYYNEAANNVENNDQIIDFDAEENDKVDCHICFKSFPNEDHLIRHQRNAHKGEQMSTSGDPNANGNSNSNGNGNKAQYHLFFVCELCGSSHPSKWERWLHVSSDHVDEPAIKCERDDCGKIFSTKALRNEHTQHHLLQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDMVPLICGVCLKVFPDVFNLNAHVKTKHWPLTNGDFSCDVCGRPYSNKSKMSRHRKIHGIESNGFDATGYDSTVPSTNESCKLDSTAIAECDFTCTMCDNVTFLNLDDLCNHRRVVHGLFPCDLCNKFYGRTSHLWKHVNRVHKGHKDVTCRFCMKTSASRDHLAAHIAKIHRYEPEVRKITKEESTMKPETAEDNFMHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRIKHMNHPDLTCESSGCKKLFRTKEDLEAHRKDHKYHNNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVADVHGSVLLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDAEIRHHYEEVHNVPNDQLAAFEQKMEIGSKADMCDDPKLRESLEVVVKEEPEDLEYCEEQYEENYNSTKRKRTSMDTYDCEMCPEIFLNLETLTEHCKNVHNVDPSILLKKIKLDTNSSKSTRKMRNRKNFECKSCKKQFCTKTLFWNHITTCTRRNQYNKTDGSGVPTTSILENHLKNNNQIKREVDADVTMNESNLNIPDFNLFEDINMQLAGVKPVPNLVSVMPAKGSGNVKCSRKDSRKVYDETTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKCYDSLAEHLKEEHGAILSCEGNNFTCKTCGRYHNARSKLLLHMSIHINLNGNYWCQNCQKNYDTEERFNEHQPSCVKEVSTKKTVESSNVLNDTKGEQEEEKEEGSLIGDEASASGEMEEEMVIDEEFDSQAEGDVEMQPETNTDDSENSEENTAESDAESNTGTTDETADENEMSSRTDLESRSNTPEGVCQSESVDSETENSDKFDEKSHSDNSNHFNARSESPEEKDSVIKNVQHPASDSDDPQMKIEKVDCESTDDEIDEEDDDGPPVLSPNPPIKIGDEVEENEESGKIQHRLVPMMSYSDDQEEEEEEEEEEEEEEEAEEAEEAEEEEEDEENENFVEAKNQDLDDEDVDSEYGNGQLEVVVESNPEQEEEGENSNEPSIQDEESGEIQINGEDGSYVVANDIDGNQILIQSNLLELNEDSNGEGQEYVANYQDGNYYELEEYQVKQNDGEEELEMEVDQENCSDEEEETVEEEFSNAEKLTASAKSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -