Gleg013054.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- -
- Assembly
- GCA_003055095.1
- Location
- NCVS01000743.1:17323-20504[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0006 0.046 13.9 0.6 1 23 33 55 33 55 0.98 2 14 0.2 16 5.9 1.1 2 23 62 86 61 87 0.92 3 14 0.00027 0.021 15.0 2.8 1 23 93 116 93 116 0.97 4 14 1.5e-05 0.0011 18.9 1.3 1 23 122 144 122 144 0.97 5 14 1.1e-05 0.00087 19.3 2.1 2 23 151 172 150 172 0.96 6 14 2.6e-06 0.0002 21.3 0.2 1 23 178 200 178 200 0.98 7 14 0.0017 0.13 12.4 0.4 1 23 247 269 247 269 0.96 8 14 6.1 4.7e+02 1.3 3.5 2 19 277 294 276 297 0.74 9 14 9.2e-07 7e-05 22.7 3.5 1 23 751 773 751 773 0.98 10 14 0.00029 0.022 14.9 2.7 1 23 780 803 780 803 0.96 11 14 4.4e-05 0.0033 17.5 0.1 1 23 811 834 811 834 0.97 12 14 0.0008 0.062 13.5 6.4 1 23 840 862 840 862 0.96 13 14 0.00018 0.014 15.5 6.3 1 23 868 890 868 890 0.98 14 14 3.9e-07 3e-05 23.9 1.5 1 23 896 918 896 918 0.98
Sequence Information
- Coding Sequence
- atGTTTAAACAAACGAATTTAACAAGTGCAATACTCAATGAtaatactgagaaaaaaaattggaaggaGCGTTCGTCTGAGGAAACACAGTATGATTATATTTGCCCAGtctgtaatttaaaatactccaatgaaaaacaattttatggGCATCTACAAACGCACAAAGGAGAAGTTTTTTGGAAATGCAAACAATGCCCAGATAATGTTGCTGAATTTCAATCACAGTCAAAATTAAAGTTGCATGAAAATACACATCATAATATGGCTCGTCCTTTCAAATGTGAATTGTGTAATTTTACATTCGATCGTGCTTCTCAACTCGATTATCACCACCGTAATATACATCTTGGTGAAAAATCTCATGTATGTCAAATTTGCTCAAAAGGATTTTTTCGTAAAGCTGATTTACAAACACATTTAAATGTACATTTGGGTATGAATATGTGCATATGTGAAGTATGTGGAAAAGAATTCAATcatatttctaatttaattagGCATAGTAGAATTCATGCAGGTGTAAAACCATATCCTTGCGATATTTGTGGAAAAagatttatacaaattaattCTCTTGCTAAACATAAACGTATTCATAAAACTAAAGaagataaatttcaacaagAATCTGTCAACAGATGTAATAGTAGTGAAACtacaatacaaaatttgtttagtaCTGAAAAGtctgATACAGACACAAACTGTGGTAACACAAGTACGATAAAACGACAGTATTATTGTAAAGTATGTGGTAAAAGTTATCCTTTTATTCTCTTACTTCGGCAACATGAAGAAAGTCATgttaatcaaattgaatcattGGAATGTAAAGACTGTAAAAAGattttccaATGTTTGAGTGATATTAAAGATCACAAGTgttctaatgaaaaattaagaaataacagtgataaaataaaaagggtaaaaaagaatttaaaacatttagctcaagaaaaaaaagtattgaaaattattaaagtaaatAATGAATCAAATAGATGTAATACAATAGAGATAACAGCAAATGTATGTGATgagatgaataaaatatcagaGCAGacTAATACACAGCTAATTaagttattacaaaataattcaaatgaaGATGTAGAACAActagaaatattaaatgaatcaGAAGAATCTTCTACATCggatgaaagaaatttgtttgaaaagaacgaggaagaaatatttcatgtttCCTCTTCAAACATTACTGACtgtgatttaaattttgaaatttttccaaataataATGATGGTAATAATTCTGTGgataatatttctcaaaatattgaaggcaataataatagtaaaaaatcacatgaaattttatcaaaaactcAGACTGTGAGTTCATTAAATTCAAGTGGTAGTAGCAATCtagaaaatgttaataatattaacaatgcAATTGTTAATTTCAAAGAACCAATGTTACGTTTAGTACAAACTGAAACTGGtgaacaattttatgaattgataataaatGTTTCGGACAAAGTTTCTACTCCTGGATTAGCTGTATATGATGACAAAAAttctgaagaaaataaaaaaaatgaagaacatCGAATCAAATCTAATAgttttcaaaagaatatttttataaatagaaacgTCGGAAAAGAAGacgtaagaaaaattcaaaacgatAAAGTAGAAAATCTTGTGCAAACATACAgtgatatgaataaaattatcaataacgAAGAATCATATGACACAAAATGTGtacaaaattctattattttgcAACATGATGATAATGATCAgataatatatacaaatttgaagaataaagATTATTCTATAGGTATCTGTGAAACTTTAGATAGTTacattgaaacaaattttgagatttttgaaaaagcaAATTATGATAGTAACGAAGCAAGATTTTTTGAACTCATAGAAATTGGTAATAATAccaatgataataaaatgtcTGAACAATCAACAGCAGTTTGTgttatagaaaaagaaaaagaaaattcacaagAATTATTTGAACAATCTTTAGAAATGATTGAAGATGAGAGCCATAAAATAGATTACATCAACTATGTAATTGGTGGTAACAAGAATAAATCAGATTTATTGATCTATTTTGGAAATAGTGTTCAATCAAATGTAGATGTAACAGATGaacaaaattcatcgaaaaatgattttcaaacaatacaAACTGATAAAACACAATATCTACAAAAATGCTCCAAACCAAAAGTTAAGAAATATCATTGCAATGTTTGTGATAAATCATTTTCTACTAgctataattataaacaacaTATAGGAACACATTTTACTgatcaacaaaaatttaaatgcaaTAAATGCCATATGACTTTTGCTTGGAAATCTACATTGAACAAACATATTGCTTCTAATCATAGACCAGATggtcaacaaaaatttgtctgtGATATTTGTCCAAAAGTATATAATACTTTGTCTCAAGTAAATGAACATGTAAAAAGGGATCATTTGAAACAGCGAAATCACGCGTGTTCCCACTGCGGcaaatcatttttcaagaagttcgatatgaaaattcacaGTCGAACTCATACAAATGAACGGCCGTATATTTGTCGTATTTGCGGAAAACAGTTTCACCATCAGAGTCATATAATTCGTCACGAGCGTACACATTCTGGAGAAAAACCGTACAGTTGtgatatttgcaaaaaaacaTTTACTCAACCTGATTCTTTAAAAGTGCACAAACAGAAGCACCAGCAAATTAAAgccgatatttttaattatcaaatggACGAAAACGAAccattcgaaataaaaaagttgtaa
- Protein Sequence
- MFKQTNLTSAILNDNTEKKNWKERSSEETQYDYICPVCNLKYSNEKQFYGHLQTHKGEVFWKCKQCPDNVAEFQSQSKLKLHENTHHNMARPFKCELCNFTFDRASQLDYHHRNIHLGEKSHVCQICSKGFFRKADLQTHLNVHLGMNMCICEVCGKEFNHISNLIRHSRIHAGVKPYPCDICGKRFIQINSLAKHKRIHKTKEDKFQQESVNRCNSSETTIQNLFSTEKSDTDTNCGNTSTIKRQYYCKVCGKSYPFILLLRQHEESHVNQIESLECKDCKKIFQCLSDIKDHKCSNEKLRNNSDKIKRVKKNLKHLAQEKKVLKIIKVNNESNRCNTIEITANVCDEMNKISEQTNTQLIKLLQNNSNEDVEQLEILNESEESSTSDERNLFEKNEEEIFHVSSSNITDCDLNFEIFPNNNDGNNSVDNISQNIEGNNNSKKSHEILSKTQTVSSLNSSGSSNLENVNNINNAIVNFKEPMLRLVQTETGEQFYELIINVSDKVSTPGLAVYDDKNSEENKKNEEHRIKSNSFQKNIFINRNVGKEDVRKIQNDKVENLVQTYSDMNKIINNEESYDTKCVQNSIILQHDDNDQIIYTNLKNKDYSIGICETLDSYIETNFEIFEKANYDSNEARFFELIEIGNNTNDNKMSEQSTAVCVIEKEKENSQELFEQSLEMIEDESHKIDYINYVIGGNKNKSDLLIYFGNSVQSNVDVTDEQNSSKNDFQTIQTDKTQYLQKCSKPKVKKYHCNVCDKSFSTSYNYKQHIGTHFTDQQKFKCNKCHMTFAWKSTLNKHIASNHRPDGQQKFVCDICPKVYNTLSQVNEHVKRDHLKQRNHACSHCGKSFFKKFDMKIHSRTHTNERPYICRICGKQFHHQSHIIRHERTHSGEKPYSCDICKKTFTQPDSLKVHKQKHQQIKADIFNYQMDENEPFEIKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -