Gleg007793.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- su(Hw)
- Assembly
- GCA_003055095.1
- Location
- NCVS01003742.1:35739-38719[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 1.4 9.2 0.1 3 20 43 60 41 62 0.93 2 13 6.1e-06 0.00047 20.1 0.6 1 23 137 160 137 160 0.96 3 13 3.7e-05 0.0029 17.7 4.2 1 23 166 189 166 189 0.96 4 13 0.00079 0.061 13.5 2.0 1 20 195 214 195 216 0.94 5 13 1.3e-07 1e-05 25.4 4.3 1 23 227 249 227 249 0.98 6 13 0.0011 0.086 13.0 0.3 2 23 259 280 258 280 0.97 7 13 0.0021 0.16 12.1 0.5 2 23 287 308 286 308 0.97 8 13 0.0001 0.0079 16.3 1.6 1 23 314 336 314 336 0.98 9 13 4.3e-06 0.00033 20.6 1.8 1 23 342 364 342 364 0.94 10 13 2.6e-05 0.002 18.2 0.9 1 23 370 393 370 393 0.94 11 13 1.6e-06 0.00012 22.0 0.7 1 23 399 421 399 421 0.97 12 13 3.7e-07 2.9e-05 24.0 0.5 1 23 427 449 427 449 0.99 13 13 0.002 0.16 12.2 3.0 5 23 459 478 456 478 0.91
Sequence Information
- Coding Sequence
- ATGGCTGAAATAATAGAACTAAGTAatcttaaagaggaagaagtGCTTACATCATCagaggaattgaaaaatataaaagtgtATGCTGAAAGTGGAAACATTATTCATTTAGTTACTGATTACGGGTGTGTAACATGTCATCGAGTATTTCAAACAGAAGAACTTCTGAAAGAACATCTGGATGTCTGCCGAGAAGAAGattcaattgatattttagaattaggaagtttaaataattatgattccgaagaagaagaagaagaagatgatcCAGATTTTCAAGATTCTAATAACGAAGATTCACCAAATGGAAagaacaataatgaaaaagtagTTATAAGGCCAGTACCAGAAACACAATGTCATTGTTGCGCTGAAGATTTAAAAACTGCTCATAGCGGAGGAGAATTTAAATGTAACGAATGCGAATTGTCATTCAAAAAGAATGCGTCACTAGAAAGACACACAATAGTTATGCATTGGAAGTGCGATACTCATTCCTGCAAAGAATGTGGCGAATCTTTCCACGACAAGAAAGCACTCAACAAACATCGATATACTGTTCACGAagacaagaaaatttatagaTGCGAGCCATGCGATACATATTTCTCTCGGAGCTATCATTTAAATCGACATAAATTGCAATCTGGATGTCATGGAACTATTCGCAATACATTCAATTGCCAAgTTTGTCACAAATCCTTCACACGTAAAGATAATTTACGCGAACACTTACGTTCTCACGCTGGTGTACCACAAAGACAGAAAAAACCATGTAGTTATTGTCCCAAAGAATTTCTTACTAGTCAACAACTGTTGATTCATGAACGAATGCACACTGGTGAGAGACCAGTGCAATGCGATTTATGcccaaaaacatttttatcatcgCTTGCAATGAAAAAACATCGGCGGATACACACAGGAGAAAAACCATTTGAATGTACCTTAtGTCAACGAAAATTTGCTGCACGAGAAACATTAAAGCGTCACAAACTCACACATACTGGAGAAAAACCGCATGTCTGTCAATATTGTGGGAAGTCATTCATACAGGCAGCGCAACTTAGAGCACATGTATTTCATCATACGGGTGAAAACGGTTTTTATTGCGATGTTTGTGGCAAAGCATTCAATCGCAAAGCCCGGTTAAGTGCTCACAAGAAATTCGAACACGAAGGTGCTACTCCATTTACATGTCAGATATGCGAAAAGCCGTTTACGCGAAGAGAAGATTTGGTGAAACATACGAATCTTCATACAGGCTTGAAACCGTTCAAGTGCGAAAAGTGCCCTAAAGCGTTTTCCGCAAAATCGTCTTTACAAGCTCACGCGAAAACTCATATACGCGAGCCACCACAATCTTGCATTGAATGCAATCGTGTATTCATTAGACACGATTGTTTAATGCGTCACATTCGTGCTAAACATCGTGAATTGCTTGATGATTTAATGGATGAAGTACAGAAAAAACAGCTACAAACGCAACTGTTTAATATTGCAAGTATGGCTGCAGCAAAAATTAGAAATGGAGAAGCCAATACGTTATCTACAAATGAGCTATTGAAGGCAATCGTTGATTTATTGCGAATACTTATAGAAGAAGAAACTTTACAGtTGTTTGGTTGGCCGAAAGCACCTATACAAGATGTTTTAGAAGCTGTGATAAGGAGATGTGGTCACGAACCTTTAACATCGGATAGTGACGTACCATTCCACGACAGGTTGAGAGAAAATGTTAAACTATTGTTCACCGTCGTTGTAGATGACGATACAGTAAAATCGTTGTTATCGACTCAGACAGTAGATGATGTTATTTTGCACGTTTTGAAGATATCCAACGAAAATCAACCATCATCATCTTAG
- Protein Sequence
- MAEIIELSNLKEEEVLTSSEELKNIKVYAESGNIIHLVTDYGCVTCHRVFQTEELLKEHLDVCREEDSIDILELGSLNNYDSEEEEEEDDPDFQDSNNEDSPNGKNNNEKVVIRPVPETQCHCCAEDLKTAHSGGEFKCNECELSFKKNASLERHTIVMHWKCDTHSCKECGESFHDKKALNKHRYTVHEDKKIYRCEPCDTYFSRSYHLNRHKLQSGCHGTIRNTFNCQVCHKSFTRKDNLREHLRSHAGVPQRQKKPCSYCPKEFLTSQQLLIHERMHTGERPVQCDLCPKTFLSSLAMKKHRRIHTGEKPFECTLCQRKFAARETLKRHKLTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCGKAFNRKARLSAHKKFEHEGATPFTCQICEKPFTRREDLVKHTNLHTGLKPFKCEKCPKAFSAKSSLQAHAKTHIREPPQSCIECNRVFIRHDCLMRHIRAKHRELLDDLMDEVQKKQLQTQLFNIASMAAAKIRNGEANTLSTNELLKAIVDLLRILIEEETLQLFGWPKAPIQDVLEAVIRRCGHEPLTSDSDVPFHDRLRENVKLLFTVVVDDDTVKSLLSTQTVDDVILHVLKISNENQPSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -