Gleg000790.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- -
- Assembly
- GCA_003055095.1
- Location
- NCVS01000821.1:258714-261042[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.081 6.2 7.2 0.0 1 20 34 53 34 55 0.95 2 19 9.1e-05 0.007 16.4 0.8 1 22 72 93 72 93 0.96 3 19 1.2e-05 0.00093 19.2 0.8 2 23 127 148 126 148 0.95 4 19 0.00056 0.043 14.0 2.3 1 23 152 174 152 174 0.97 5 19 1e-05 0.00078 19.4 0.9 2 23 181 202 181 202 0.97 6 19 1.3e-06 9.8e-05 22.3 2.2 2 23 209 230 208 230 0.96 7 19 8.6 6.6e+02 0.8 6.7 1 20 239 258 239 261 0.89 8 19 0.075 5.8 7.3 0.1 2 23 268 288 267 288 0.94 9 19 0.42 32 4.9 2.5 3 13 296 306 295 308 0.89 10 19 0.00068 0.052 13.7 0.6 1 23 372 394 372 394 0.98 11 19 0.00031 0.023 14.8 2.5 2 23 405 427 404 427 0.95 12 19 7.4e-05 0.0057 16.7 3.7 1 23 433 455 433 455 0.96 13 19 0.048 3.7 7.9 0.4 1 23 459 481 459 481 0.97 14 19 5.7e-07 4.4e-05 23.4 1.5 3 23 489 509 487 509 0.97 15 19 0.00064 0.049 13.8 0.4 1 23 515 537 515 537 0.98 16 19 0.7 53 4.2 1.5 1 23 543 565 543 565 0.96 17 19 1.5e-06 0.00011 22.1 0.5 2 23 572 593 571 593 0.97 18 19 8.3e-07 6.3e-05 22.9 0.6 1 23 599 621 599 621 0.97 19 19 2.2e-06 0.00017 21.5 1.5 1 23 627 649 627 649 0.98
Sequence Information
- Coding Sequence
- ATGGCACCAATAACGAAGCCTCGATGGAAgccaaataaaattctcattacCTCAATTCGAGAAAtaccgaaaatttcgataaaacaaaaatcaagCAGTTATCGTTGCGATTCGTGCTCCGAAGAATATCCGACAGAAGCCGCACTCATTATTCACAGAACCGAACAATCAATTCTCAGAACTCGCGAAGCTCTTCGTACAGCCGAAAAGAGATATAAGTGTGACAATTGCGGCGAAAAGTTCGCGCGTAAACAGACGTACATTCAGCATAGTCGAACAAAGTGTGAGCCCTCAGcgttcgaaacgataaatatgAACAAGGAGAGAACGATGAAAAACAAGGTAGGCCAAAGAGAGCTCGAACCTACCGAATCCATTCAATGCGACATATGCGAAAAGACAttcaagaaacaaaaatatctgaaCGCACACAAGATTTTACACGACGCGTGTCATATTTGCCACATTTGCGGAGCCAAGCTCACCTCGGAATATTATTTGAAGATTCATGTAAAGAGGCACAATAAAGAGTTCACCGAATATTGTCCAATTTGTAATAAAGGTTTTTTTCTAAAAGGTAACCTGAGAAATCATATGACCAAGCACAACGACGTGAAGCCTTGTATTTGTGAGATTTGCAACAAATCTTTCAGTAACAAAATCTACCTGAAAAGTCATATAAAGATTCACAGCGACCCCGAGACTCGTAAGAAATACAAATGCGAGATATGTAATTTCGAGACGTTCTATAGTTATTGTTTTAAGGAGCATCATTGGACGCACACAGGCGAGGGTAACGTACCCTGCGAGGTTTGCGGTAAATTAATTCGACGCCAGTACATGAAAATTCACATCAGGATACACACTGGCGAGAAACCCGAAATTTGTGAATTCTGCGGCAAAGCATTCAGCTCGAGGAAGTGTGAAGGATTCGAGAACATCGGGGCAAAGCTGAAGCGAATTGAGTTCATCGAGCTGGATGAAACTCTAGTCGGGTATCACGACGAAACTTTGGAGCTCGATATCGTgaattcgtcgaaaattcAGCAGCGAGTGAATGCGCCGTGTAAGTACAAGGAATCTCAAAGGACGAGACAAAAGAATCAAGCGATCTACGAGTGCGAGATTTGTCAAGAGCGCGTTAAAGGAAAATCTCTGTTCGCGAAACACAAATCTACGCACGTGAAAGCCGACGCGACTGAGGAGGGACTTCACTGCGAGAAATGCGATAGAgctttttcgactcgcgagagattCGAGAAGCACCTGATCAAGTCTCATCAAGAAGAGAGGCCCTTCCCATGCAGCTTGTGCGGCAAGTGCTTCAAAACCGAAGGGTTCTTGAAAACTCACTCGAAACAGCATAACAAACGTTTCAATTGCGATGTGTGCGGAATCTCAAAAGTGTCCGGTTACGATTTGAGATTGCACAAGAGAAAACACGACAAGGAGTACGTAACCCATTGCGACATATGCGGAAAAGGATTTTACACTAGTCAGTCCCTAGAGCGCCACATGCTCACTCACACTGGTGAGAAACCGTTCGTGTGCAAAGTCTGTAACTCTGCGTACGCGAGCAGGGCTTATCTCAACCTGCATACGAAATCTCACGGCCAGCGCGAAACGTACAAATGTACGTCCTGCGAATTCGAAACGCACTGGAAATCCGCCCTGAAGATTCACGTGAAAATTCACACGGGAGAGAATCAGATCACCTGCAATCTCTGCGGCAAGTCGGTGTCCAGTAAAACTTATCTGCAAACCCACATGAATATTCACGCGGGCGTCAAACCGCATATTTGCGAAGTTTGCGGTAAAGCCTTTAGCGTAAGGAAATATTTGATAGTGCATTTGAGAACCCACACAGGCGAAAGACCTTACGCGTGCAAAATCTGCTTCAAGAAATTCACTCAACAGGGTACTATGAACGCCCATATGAAGAGTCATAAATCTAAATGA
- Protein Sequence
- MAPITKPRWKPNKILITSIREIPKISIKQKSSSYRCDSCSEEYPTEAALIIHRTEQSILRTREALRTAEKRYKCDNCGEKFARKQTYIQHSRTKCEPSAFETINMNKERTMKNKVGQRELEPTESIQCDICEKTFKKQKYLNAHKILHDACHICHICGAKLTSEYYLKIHVKRHNKEFTEYCPICNKGFFLKGNLRNHMTKHNDVKPCICEICNKSFSNKIYLKSHIKIHSDPETRKKYKCEICNFETFYSYCFKEHHWTHTGEGNVPCEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCEGFENIGAKLKRIEFIELDETLVGYHDETLELDIVNSSKIQQRVNAPCKYKESQRTRQKNQAIYECEICQERVKGKSLFAKHKSTHVKADATEEGLHCEKCDRAFSTRERFEKHLIKSHQEERPFPCSLCGKCFKTEGFLKTHSKQHNKRFNCDVCGISKVSGYDLRLHKRKHDKEYVTHCDICGKGFYTSQSLERHMLTHTGEKPFVCKVCNSAYASRAYLNLHTKSHGQRETYKCTSCEFETHWKSALKIHVKIHTGENQITCNLCGKSVSSKTYLQTHMNIHAGVKPHICEVCGKAFSVRKYLIVHLRTHTGERPYACKICFKKFTQQGTMNAHMKSHKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -