Gleg006934.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- -
- Assembly
- GCA_003055095.1
- Location
- NCVS01001753.1:2664-6551[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.19 15 6.0 1.1 1 23 330 352 330 352 0.96 2 19 0.02 1.6 9.1 0.6 2 23 387 408 386 408 0.95 3 19 0.011 0.86 9.9 5.2 1 23 478 500 478 500 0.97 4 19 0.0016 0.12 12.5 1.2 2 23 504 525 503 525 0.96 5 19 5.9e-05 0.0045 17.0 2.6 2 23 581 602 580 602 0.97 6 19 0.00015 0.012 15.7 3.8 1 23 607 629 607 629 0.97 7 19 0.00033 0.025 14.7 0.7 1 21 635 655 635 659 0.92 8 19 0.0029 0.22 11.7 4.9 2 23 731 752 730 752 0.95 9 19 0.00015 0.012 15.7 5.0 1 23 800 822 800 822 0.97 10 19 0.00022 0.017 15.3 0.7 1 20 827 846 827 848 0.94 11 19 0.00063 0.048 13.8 0.4 2 23 859 880 859 880 0.97 12 19 2.2e-05 0.0017 18.4 0.6 2 23 919 940 918 940 0.97 13 19 2e-05 0.0015 18.5 1.6 1 23 945 967 945 967 0.95 14 19 0.00011 0.0087 16.2 2.9 1 23 973 995 973 995 0.98 15 19 6.4e-06 0.00049 20.1 0.4 1 23 1011 1033 1011 1033 0.95 16 19 2.9e-07 2.2e-05 24.3 0.6 1 23 1039 1061 1039 1061 0.99 17 19 3.1e-05 0.0024 17.9 0.2 1 23 1067 1089 1067 1089 0.97 18 19 0.00012 0.0089 16.1 4.1 1 23 1095 1117 1095 1117 0.96 19 19 0.0082 0.63 10.3 0.4 1 20 1123 1142 1123 1144 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCATACAAATAAATGCGTCTAATTCACCGCATAACGTAGAAAATGCGGTGAATGAGATGACAATGTGTCGTATTTGTTTGCTGGAGAATTTGGTCATGCGAGATCTCTTTTCGGAAAATGATGTTACGTCTCTGTCGAACAAAGCAATGAGTTTTGCCAACGTTAAGATGCTTCCTGGAGATGGCTTACCACCACAAGTTTGTTGTATCTGCGCTGACAAATTAGAATCTGCATATGAATTTAAACTTCAGGTTGAACAGGCTGATGGAGTATTAAGAGAGAGATACGATTCTCTGCGTGTtaaagaagaattatttttcaatgaagtAGAAGTACACCTAGCAGCCGAAAgtcaaaaagatatttcgaatattcaaataGAAACTCAGTATCACGCTACAGATAATGGCAATTATCATCAAGAGGttgacaatgaaaaaaatcttttgaaagATGATTTAGAACTTTTACCAGTGGATAAGTTGGAAGAACAAAATACACAACCTTTTTCAAAAGaTGAAGGAGAAACAGAGCAACTTACTCTTAAAGATGCTGAACAAATAACAGAAGAGCAGCTAACCATGAATAAATCTGTGGTCGAATCAATGCATGTTGAAGAATCTACTTATTTAACACAAAATGATAATGTTCTTTCAAATGAAGAACTGTCGTGTTCCAAAGAAGAAGTAATTTCTCAACAAGATGTAGAACAGTGTGTAAACTCTATTTTAAGAACTTTACCAGATTCTAATGTAAATTCAGAAAATGATTTGTCcaaagaaaattctgaaattcaattagaaCAGCAAGAGCAATCGTCCATGTTAGAAGAAACACAGATTGAGACAAGGAGAAGTAAACGAAAATCCACGAGCCAAGTCCTTACAGACCGAGACTCggatgaagaaaattattttgagaatttgaATCTGAGTTCACgtttgaaacaatttcaagCTGATAAAGCTGACAAGATTTTTTTTGCCTGTTATCTTTGCGATGAGCAATTCTTATCAAAAGTAGTTCTAAAGGAACATATGCACTCTCATGAAGAAGTCAGGAAGGCTTTAGCTCTGGCTAAGACTCCTGATAAATCGCAAAAAACAACTCAATCACCTGCGAAAATGCCTCCATCGGGAAAACGGGCTAATAAATGTCCATATTGTggtaaagaatatttatatgtaatttctttcaataaacatttaaaacaacacgaaaaagagaggaacgaaaCTAAAGATGAATCAATGCCTCTCGAAGTTTCATTTCGCGAAGATGAACACAGTTTGGATTTCGACAATGCTTCGCGGTATGATGATTTTGATTACCACAGGGGGGACGATGACGGGGATTCAACAAATGAAGAAAGTGAAGAGAACAATGACGACAATGAATTAGATAAAGATCATAAgtcgggaaaattttcttgtgatAAATGTTCcgaagaatttcattcaaaacaCAGTTTATTAAAGCATTCAATTACACATATTAATCTGACGTGTAGCGTTTGCAAAGAAGAGTTTGATACcctcgaaaaattacgaaatcatCGTACAAAGCACGTGATAGAGGGTGTTTTATCTGAACAAGATTTGGAAGAAGACGATAAACACTTAATTGAAAAAGATGCAATGGAATTCGATGAGGGCAAAGCTGAAGATttagaaaatatcgaagatgCAAATAATCACCAAGACAAACTAGATTGGTCTCAGATTAAATATCTGAAATGCCCACACTGTCCTATGAAATATACCCATAAAAAAGCTCTGGCTAGACACGTGGAAACACACACAGGGACCAAATACAATTGTAAGGTTTGTAATCAAGATTTTAGTAAGAAAGATCATTATCTAAGGCATATGGAGCAGCATGGAAGAATTAAAACTTATAAGTGCACGCAATGTAATAAAACATTCGGAAATGAGTTGACACTTCGTAATCACTTAATAGCAACTAATCATAAGACTTTCATACATGGACAAGAATACGATCCAAATAAACGCATCAAGAGAGTAGCCGCAAAGGCTGCTCAGAGAATCATCGACAAAATAAAGACCGAGGACGATGTCGAGGATTATCCTGAAGACAGTGTTGACGACAGTGTCGATTTTGATATAAACCGTAGTCGCAAACGGGACTCTGTACCAAAGAAGTGTTATTATAGAAAAGAATTAGAGTGCGCTACATGTCATAAAAGATGCAGCTCGAAATTATCATTAACGAGGCACATGGAGCAGCACGTTAAGGacgagaaaatggaaaagacGGAAAAAGCTAAAAGGGATTCCAGATTGATGAACAGCAACGAGCttggcgacgacgacgacgacgacgacgacaatTCAGATTTCGAGAGTGGACTTGACTGGCCAATGGACAGTCACGAATGCACTACGTGTAAGAAAAGATACAGTACGAAAAAATCGTTGTTACGTCATCAATTGCTTCACGAAGAACCAAACTTCGAATGTGATATATGTAATGTAAAATTCTACCGCAAGGATAAATTGAAAGCTCATTACGACAAATGTTCGGAGAAAAATCCCGATCAAGTgagaaaatgtaatatttgcGGCGACAGTTTCGAGAACAATGAGATGCTGCGTGAACACAGAGCGAAGCACGTTACCGAAGGAATTCTCACGGAGGAGGACCTCCGAGACATCGAACCTAGACCAGAAGAGAAGAAACCtggcgaaaaaattgtacgtaaGAGGAGAACCGATATAGTCGGTCTCGAATGTACCGAGTGCAACAAGCAATACACTTCTAGAAAAGGTTTACTGCGTCACATACAAGTTCACGAAGGAAAGAAATATCTCTGCGATATTTGTCCCAAGAAGTTTTATAGAAGAGAACATTTGAAGATTCATGTAGCCAAGCATAATATGATCAAACCGTACAAATGCACACGCTGTACGAAACGTTTCATCAAAGAAGAACAGCTTACTAATCATCTCTCTAAACACGACAGAAATTTCAAGAAGAATAAAGAAACGGACACGTCCAAGAGATTCTTGTGCGAAGTTTGTTCCAAGAGTTTCACGCAATCAACGACACTGATTGCGCATCTTCGCGCTCACAATGGAATTAAACCGTACGTGTGTGAGGTGTGTTCGCGTCCTTTCACAACAAATGCGTACTTAAAGATGCATATGAGAACGCATACGCAGGAGCGACCGTACATTTGTCAATATTGTTCGCGAGCGTTCGCCAGAGCTGACACCCTGGCAAATCATTTGACTTCGCACACCGGCGAAGCCAAATATCATTGCAAATATTGTCCAAAGAATTTCCGTCGACTCAAATCTCTCAAAGAACACGTTTTCATTCACACAGGGCAAAGACCCTATGCGTGTCCAACTTGTGATCGTAGGTTCAACAACAACGGCAGCCGTTACGCCCACAGCAAGAGATGCAAGCAGAACCTGTTGCAAAACCAAAATCGTACTCAAACCTTGACTCAAGTTGTACAAAATACGAatcaacaacagcaacagcagcagcagcaggtTGTTAAAACGCAAAACATAAAGACTATTACAATAGCTAGACAAGCCGATCCTGTAACGGCTCCCCATGTTATGCAACATCAGGAAATACTTATGCCGTTGATATTACCCTTGACAGTGACACTCACGGATGTTGGCGAGGAAGTAATATTGCCCGAaggtacaaaaatatttacaacgtcgtaa
- Protein Sequence
- MDAIQINASNSPHNVENAVNEMTMCRICLLENLVMRDLFSENDVTSLSNKAMSFANVKMLPGDGLPPQVCCICADKLESAYEFKLQVEQADGVLRERYDSLRVKEELFFNEVEVHLAAESQKDISNIQIETQYHATDNGNYHQEVDNEKNLLKDDLELLPVDKLEEQNTQPFSKDEGETEQLTLKDAEQITEEQLTMNKSVVESMHVEESTYLTQNDNVLSNEELSCSKEEVISQQDVEQCVNSILRTLPDSNVNSENDLSKENSEIQLEQQEQSSMLEETQIETRRSKRKSTSQVLTDRDSDEENYFENLNLSSRLKQFQADKADKIFFACYLCDEQFLSKVVLKEHMHSHEEVRKALALAKTPDKSQKTTQSPAKMPPSGKRANKCPYCGKEYLYVISFNKHLKQHEKERNETKDESMPLEVSFREDEHSLDFDNASRYDDFDYHRGDDDGDSTNEESEENNDDNELDKDHKSGKFSCDKCSEEFHSKHSLLKHSITHINLTCSVCKEEFDTLEKLRNHRTKHVIEGVLSEQDLEEDDKHLIEKDAMEFDEGKAEDLENIEDANNHQDKLDWSQIKYLKCPHCPMKYTHKKALARHVETHTGTKYNCKVCNQDFSKKDHYLRHMEQHGRIKTYKCTQCNKTFGNELTLRNHLIATNHKTFIHGQEYDPNKRIKRVAAKAAQRIIDKIKTEDDVEDYPEDSVDDSVDFDINRSRKRDSVPKKCYYRKELECATCHKRCSSKLSLTRHMEQHVKDEKMEKTEKAKRDSRLMNSNELGDDDDDDDDNSDFESGLDWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLREHRAKHVTEGILTEEDLRDIEPRPEEKKPGEKIVRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRNFKKNKETDTSKRFLCEVCSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRTQTLTQVVQNTNQQQQQQQQQVVKTQNIKTITIARQADPVTAPHVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -