Basic Information

Insect: Goniozus legneri
Gene Symbol: -
Assembly: GCA_003055095.1
Location: NCVS01001849.1:118535-124964[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.2e-05 0.0032 17.5 1.4 1 23 457 479 457 479 0.96

2 18 1.6e-05 0.0012 18.9 1.9 1 20 485 504 485 507 0.94

3 18 1e-05 0.00079 19.4 1.4 1 23 513 535 513 535 0.98

4 18 6e-05 0.0046 17.0 4.4 1 21 541 561 541 563 0.95

5 18 8.1e-06 0.00062 19.8 5.6 1 23 569 591 569 591 0.99

6 18 1.9e-05 0.0014 18.6 5.3 1 23 597 619 597 619 0.97

7 18 7e-05 0.0054 16.8 6.9 1 23 625 647 625 647 0.96

8 18 6.9e-08 5.3e-06 26.3 2.7 1 23 653 675 653 675 0.98

9 18 5.1e-05 0.0039 17.2 6.7 1 23 681 703 681 703 0.97

10 18 1.6e-05 0.0012 18.8 5.8 1 23 709 731 709 731 0.98

11 18 4.2e-07 3.2e-05 23.8 2.9 1 23 737 759 737 759 0.98

12 18 6.2e-06 0.00048 20.1 7.8 1 23 765 787 765 787 0.98

13 18 2e-05 0.0015 18.5 9.1 1 23 793 815 793 815 0.98

14 18 2.6e-05 0.002 18.2 7.5 1 23 821 843 821 843 0.98

15 18 0.0012 0.095 12.9 8.8 1 21 849 869 849 871 0.94

16 18 9.4e-06 0.00072 19.5 0.4 1 23 877 899 877 899 0.98

17 18 0.023 1.7 8.9 4.5 1 23 909 931 909 931 0.98

18 18 3.6e-07 2.8e-05 24.0 1.3 1 23 937 959 937 959 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.2e-05	0.0032	17.5	1.4	1	23	457	479	457	479	0.96
2	18	1.6e-05	0.0012	18.9	1.9	1	20	485	504	485	507	0.94
3	18	1e-05	0.00079	19.4	1.4	1	23	513	535	513	535	0.98
4	18	6e-05	0.0046	17.0	4.4	1	21	541	561	541	563	0.95
5	18	8.1e-06	0.00062	19.8	5.6	1	23	569	591	569	591	0.99
6	18	1.9e-05	0.0014	18.6	5.3	1	23	597	619	597	619	0.97
7	18	7e-05	0.0054	16.8	6.9	1	23	625	647	625	647	0.96
8	18	6.9e-08	5.3e-06	26.3	2.7	1	23	653	675	653	675	0.98
9	18	5.1e-05	0.0039	17.2	6.7	1	23	681	703	681	703	0.97
10	18	1.6e-05	0.0012	18.8	5.8	1	23	709	731	709	731	0.98
11	18	4.2e-07	3.2e-05	23.8	2.9	1	23	737	759	737	759	0.98
12	18	6.2e-06	0.00048	20.1	7.8	1	23	765	787	765	787	0.98
13	18	2e-05	0.0015	18.5	9.1	1	23	793	815	793	815	0.98
14	18	2.6e-05	0.002	18.2	7.5	1	23	821	843	821	843	0.98
15	18	0.0012	0.095	12.9	8.8	1	21	849	869	849	871	0.94
16	18	9.4e-06	0.00072	19.5	0.4	1	23	877	899	877	899	0.98
17	18	0.023	1.7	8.9	4.5	1	23	909	931	909	931	0.98
18	18	3.6e-07	2.8e-05	24.0	1.3	1	23	937	959	937	959	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAACATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACACGGGTCAGAGCGGTCGTCCTCCATACCCAGGTGGTTTGGCTACTGCGACCAGTCTTGGCAATGTAGGGAATACCCCTCATTCGTCCCCAGACCTGCGTGTAGGTACAGCTGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTGTTTCCCGGGCCGCTACCCCAGGTCTCAGTTTATCACCATTCCCACCATAACTCCTCGCACAGGAGTGGTGGCAGTGGAGAATCATCTTCCAAAGAGCCACCTTCCTCGTTGACCCAGGAAATGGCGTTGACTTCCAGCTCTCATCATCAGTCGCCACCTTCGCATCATCATCATCAATCTACAGTTAGCAACGCAAGTCACCACAGTTCCCTGCAAACCACTCCTCAGATTCCAGTATCCCTTCCGGGTCTTAATATAGACGGGTCACACATTCCTGCGAGCCATTTACAGGCAGCTCACGCGCAAATGCAACAAATGCAGGCTCAACAGCAACAGCTGcatcagcagcaacagcaatcgcagcagcagcaacaacaacaacagtcTCACCATCCAATGCAAAATCATCAAACTGCTCAGAACAATGGACCAACTACGCACAATCAAAGTACACAACGGGATGATAATAAGGTAAAAGATGAAGGTGGTAGCTGCACAACCGAACGTTGTAGCGACAATCAAGTTCATTGCCAAGTTCAATGCGATCTTCAACTACAACCACCACAAGATCTGCAGCAAAGTTTAatgcaacagcagcagcagcagcagcaacaacaacagcagcagcagcaacaacaacaacagcagcagcaacagcagcagcagatTGGCGCCAATATTAGCAGTAATTCTACGAGCGAAGGAGGCAATCAAACGAATTCCGAGAAGccagagaaagaaaaggaattGCGACAACTAAACATGGCGCAatttcAAGTGCCGGATTTGAAACCTGGGGGCCATATGATGGACGTCAGAACAGCGGATGGATCTGTTGTGAAGATAAGCGCTGGAAACGAACAGGATCTTGCTAAAACATTAGGCGTAGAGATGGTTCAAAATATGTACAAgGTCAATGTTGAAGATATAAATCAACTATTGGCGTATCACGAagtttttggaaaattgcAAAGTGAGATAGCTGCCGGTACTACCCTGGTAGGTGGCACGGTACCTACTCAAACGGTTACAACAATACAAAATGGCACACCGATTGTGCAACaagttcaattaaataaattcgacaTTAAAACAAGCGATGGTGAGGCAACACCAGGTCCAAGCGCGTCGCCCGTTTCTGTGGGCAGTCACGCTTGTGAAATTTGTGGTAAAATCTTTCAGTTTCGTTATCAACTTATTGTTCATCGTAGATATCACACTGAAAGAAAGCCTTTCACTTGTCAGGTATGTGGAAAAGCGTTTACGAACGCTAATGATTTAACACGACACGGGAAATGTCATTTAGGCGGTTCTATGTTTACGTGTACAGTTTGTTTTCACGTATTTGCCAATGCCCCGTCGCTTGAACGTCATATGAAACGCCATGCTACCGATAAACCTTACAATTGTACGGTTTGCGGTAAAAGTTTCGCCAGGAAAGAACACCTTGACAATCACACGCGTTGTCACACAGGCGAAACGCCTTATAGGTGCCAGTATTGTTCTAAAACATTTACACGCAAGGAACATATGGTAAATCACGTTCGCAAACACACGGGTGAGACACCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGAAAAGAACATTTTATGAACCATGTTATGTGGCATACAGGAGAAACGCCTCATCATTGCCAGGCATGCGGCAAGAAGTATACGCGTAAGGAGCATCTCGCTAATCATATGCGGTCGCACACCAACGACACGCCGTTCCGTTGCGAAATATGCGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACACCGCACCGATGTGACTTCTGTTCGAAGACATTCACGCGGAAGGAGCATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCCCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTAGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGGAAGGACCATCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAATCGCCACATCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCACGTGAGAATCCATACTGGCGAATCTCCACATAGGTGTGAGTTCTGCCAAAGAACTTTTACTAGAAAGGAGCATCTTAATAATCATCTCCGTCAGCATACCGGGGATTCTTCCCACTGTTGTAATGTTTGTTCGAAACCGTTCACGAGGAAGgaGCACCTTGTTAATCACATGAGATGCCACACCGGTGAACGCCCGTTCGTTTGCACCGAGTGCGGAAAGAGCTTCCCGTTGAAGGGCAACTTGCTATTCCACATGCGATCGCACAATAAAGGCAGCAACGCCGAACGACCGTTCCGTTGCGACCTCTGTCCCAAAGATTTTATGTGCAAGGGCCATTTGGTATCGCATAGACGGTCGCACTCCGACGAACGACCGCACAGTTGTCCCGACTGTGGCAAGACCTTTGTCGAGAAGGGCAACATGCTGAGACATTTGAGGAAACACGCCGCCGAGGGCCCACCGACGCAAGTAAGCACGCCATCGGCGATACCGCAGTCCAGTGTCCTGCCGATACCAGCAGCGGCAGTACTCGTGGGACATCCATTGGCACCGCCGGCCCCGCCAGTCGTACCCCAACACACGGTCGTCGTACCAACGCCGCCCGGTGTACTCACATCGTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNTGQSGRPPYPGGLATATSLGNVGNTPHSSPDLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSGGSGESSSKEPPSSLTQEMALTSSSHHQSPPSHHHHQSTVSNASHHSSLQTTPQIPVSLPGLNIDGSHIPASHLQAAHAQMQQMQAQQQQLHQQQQQSQQQQQQQQSHHPMQNHQTAQNNGPTTHNQSTQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQQQQQQQQQQQQQQIGANISSNSTSEGGNQTNSEKPEKEKELRQLNMAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSSVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00899003;
80% Identity: -