Gleg006230.1
Basic Information
- Insect
- Goniozus legneri
- Gene Symbol
- lov
- Assembly
- GCA_003055095.1
- Location
- NCVS01000124.1:42322-44300[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 3.4 2.4e+03 -2.0 0.0 29 40 176 188 174 191 0.82 2 6 9.8e-08 6.9e-05 22.1 0.0 2 38 198 233 197 240 0.84 3 6 3.3e-12 2.4e-09 36.4 0.0 5 39 251 284 248 291 0.85 4 6 0.18 1.2e+02 2.1 0.0 21 34 318 331 304 338 0.80 5 6 3.3 2.3e+03 -2.0 0.0 32 45 346 360 346 360 0.89 6 6 2.5e-12 1.8e-09 36.8 0.1 4 39 362 397 359 402 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAAATCGGCGATCAGCTTGAACATCATCAAAGCTATTGCTTCAAATGGGCCGATTACCAGAATCATCTGTCTGGAGTGGTACGTCAACTTCTCGAAGAGGATTGTATGGTGGATGTTGTTCTTTCAGCCGATGGTGTTCGTATACAGGCTCATCGAATTGTTCTTTGTGCCTGCAGTACTTTATTTCaggaAATTTTGAGCCAAGTAAACGATGATCATCCTACTATAATATTAAGTGACATATCGGCACAAGATGTGAGATGtataatagaatttatttacCATGGGGAAGTAAGAATTCCAGTAGAGAACATCAATAGTTTATTGGATGCAGCTCGATCGCTAAAAATATGTGGATTAGTAGAGATTGATGGACTGGAAGATCCAGACACTTCTATGCAAAGTGTTAAAGAAATGTCCTCCGATGAAGCAAGCAAATTGGTAGAATCTGATGATAAAGTAATAGATGCTATTGATATTGGTTATGAAATAACAGAACCTCAATCCGAAGTTAATTTGAGTGACACTACAATAATTAACAGAAGGAAAAAACGTCGAAGAGACGCTATTAAGAGGGAATATAGCGATGATATGTTAGTGTCTGCTATAAACGACCTGAGATCGGGTCAAACCTTAATTGAAGCTGCTACCCGACACAATATTCCAAGGTCTACTCTTTACATGAGGGCAAAAGCAATAGGTATTCATTTGAATACCTCTCGAAATGAATATCCCGCTGAGTGCATGAAAGCAGCTATAAATGCTGTAGTCGAGGGTTCTAGCTTACAACATGCTTCAGAAATGTTTGGTATTCCGAAAACAGTGCTTTGGAGAAGAATACAAAAAGAAGGATATCATATTTTGCGATCCGAAATGAAACGGTCTTATGGTtctgaaaagagagaagccgCGGTAAAAGCATTAGAGAGGGGTGAAAATCTTACAAAAGTTGCTTTAGAATTTAAAATACCGAAAACAACCCTATTCCGCGATAAAGCACGCTTGGTTCATGAAGGTAAGTTACCGCtatctttttggaaaaaacGCAAAACAGAAAATGAGGAATTGAAAAGGTCACGATTGGAAGAGGCTGTAGCGGCCTGTAAAAATGGGAAAATGTCTCAAGCTGCGGCATCTGTTACATATCGAATAccaaaaacaacaatatggAGGCGACTACAGCAGGATTgtaaaaaatctgaaaaacaatcgaaaagACATCAACGGGAATCCGAATCTGCCCAAAGTACTACggataaaattgaagaaacggAATTCAATTATTGCGAGGTCTCGTCTGAAATACCAATAACCTATATAGACGAAAATAGTATTCCTGAAGATTCGGTAATCATTCTAACTACAGAAGATGTTGATGGATTGAATTTAGAAGAAGGGAGACAAATTATCGTAAATACTactACTGATTCGGAATATGTTCCTTGTACCATAAGTATTCAAGATAACTCGAATTATTCGCAAGAGGAAAGTTAG
- Protein Sequence
- MSEIGDQLEHHQSYCFKWADYQNHLSGVVRQLLEEDCMVDVVLSADGVRIQAHRIVLCACSTLFQEILSQVNDDHPTIILSDISAQDVRCIIEFIYHGEVRIPVENINSLLDAARSLKICGLVEIDGLEDPDTSMQSVKEMSSDEASKLVESDDKVIDAIDIGYEITEPQSEVNLSDTTIINRRKKRRRDAIKREYSDDMLVSAINDLRSGQTLIEAATRHNIPRSTLYMRAKAIGIHLNTSRNEYPAECMKAAINAVVEGSSLQHASEMFGIPKTVLWRRIQKEGYHILRSEMKRSYGSEKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVHEGKLPLSFWKKRKTENEELKRSRLEEAVAACKNGKMSQAAASVTYRIPKTTIWRRLQQDCKKSEKQSKRHQRESESAQSTTDKIEETEFNYCEVSSEIPITYIDENSIPEDSVIILTTEDVDGLNLEEGRQIIVNTTTDSEYVPCTISIQDNSNYSQEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00756782;
- 90% Identity
- iTF_00756782;
- 80% Identity
- iTF_00756782;