Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010004490.1:30313-59025[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.16 19 7.0 0.1 2 23 280 302 279 302 0.88

2 14 0.00025 0.029 15.8 0.4 1 23 359 382 359 382 0.97

3 14 0.00067 0.077 14.5 4.6 1 23 507 530 507 530 0.96

4 14 0.036 4.1 9.1 2.8 2 23 537 559 536 559 0.95

5 14 0.00086 0.099 14.2 3.3 1 21 674 694 674 695 0.95

6 14 0.0041 0.47 12.0 1.5 2 23 707 729 706 729 0.92

7 14 0.34 39 6.0 0.9 1 23 732 755 732 755 0.95

8 14 0.092 11 7.8 2.7 3 23 762 782 760 782 0.96

9 14 0.43 50 5.7 0.1 1 23 786 809 786 809 0.96

10 14 0.6 69 5.2 0.4 2 23 816 838 815 838 0.94

11 14 0.05 5.7 8.6 0.5 2 23 847 869 846 869 0.94

12 14 1.6 1.8e+02 3.9 2.6 2 23 1040 1062 1039 1062 0.94

13 14 0.38 44 5.9 0.7 2 23 1069 1091 1068 1091 0.93

14 14 0.55 63 5.4 0.9 1 23 1104 1126 1104 1126 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.16	19	7.0	0.1	2	23	280	302	279	302	0.88
2	14	0.00025	0.029	15.8	0.4	1	23	359	382	359	382	0.97
3	14	0.00067	0.077	14.5	4.6	1	23	507	530	507	530	0.96
4	14	0.036	4.1	9.1	2.8	2	23	537	559	536	559	0.95
5	14	0.00086	0.099	14.2	3.3	1	21	674	694	674	695	0.95
6	14	0.0041	0.47	12.0	1.5	2	23	707	729	706	729	0.92
7	14	0.34	39	6.0	0.9	1	23	732	755	732	755	0.95
8	14	0.092	11	7.8	2.7	3	23	762	782	760	782	0.96
9	14	0.43	50	5.7	0.1	1	23	786	809	786	809	0.96
10	14	0.6	69	5.2	0.4	2	23	816	838	815	838	0.94
11	14	0.05	5.7	8.6	0.5	2	23	847	869	846	869	0.94
12	14	1.6	1.8e+02	3.9	2.6	2	23	1040	1062	1039	1062	0.94
13	14	0.38	44	5.9	0.7	2	23	1069	1091	1068	1091	0.93
14	14	0.55	63	5.4	0.9	1	23	1104	1126	1104	1126	0.95

Sequence Information

Coding Sequence: ATGGAAAAAGAGGAAATTTGGTGGGAACCCTGTAGAGTAAAGgTTTCTCCTTACTGTCTCCTTCCTGATACAATTTGTGGAGAATGCACTGAAAATGTTGACAATTTTTACACCTTTGTAAAAAACTGCTTGCAGAACATCATAATTCTTGAAACTCAGTATGACATCCAGGAATCGAGTTTGAAATCCAAACAAAAAAGAGATAAAGGATGCTACGTTGATTTCCAAGATAGGAAGATTAATAAGGGAATACAAACTGATGACTGTCTTGATGTTCTATGTGGTAGAAATTCCACTTTGGAAGATTACTGCCTCAATTTTCCTCAAACGATATTGTTTCTCGATAAGGAAGAACCTTTATCCAATAAGGAACTGTCTTTGGTTAAATACGACGTTGATTCAGATTCGAGCTTAGAGGAATCTGCTGTCAATAATGGAAAAGTAGTATTGGGGGAAAAATTACAATCTATGGCAGATATATCAAAATATGTTGAATCTTTATTGAGTAAAAATTCGTTTTCaacaaaatctcaatattttgataattcagaaaaacaaattattagtgAGATATCTGAAAGAAAAAACTTGAAACGAAAAAATGAGGTAATAGAAAGTTGTAAGCCAAAAATTTTCAAGCTGGACACATCAagtagaagaaaaaataaaataccaaaGAAACTAGATACTCAAGAAGTTGGCAAAATTACCACACCTCCTTCTGAAACTCGGAAAGTTGATGTATATCAAACATTATCAGAAATCCAAAATAATGATACAGATATTCAAAAAAACATGACTCCTCAGGATGAAAAATTGTTGTCATCTCTACCACAAAGTTGTTTGCTTTGTGATACACATTTTTCTGGTCCAGCTGCTCTGGCATCACATGTTTTTGAAGCTCATGGTATTGATATGGCCGAAGTTGTTTCTTCTGGATCAGGGGAATCTTCTCCAGAAAAACACCGAAAGAAAATTCCCAATCTGGTTAAAATTGCAGATTTGAAAAAAGGTGATTCTGCGGatgatCAGCCTTTAGCTCGCCAAGAAGAACCTCCAGTTCTTCATCCTAGCTTTCGGTGTCCCAACTGTCCTGGCATATTCACAAGCAAACAAGACCTCATGATGCACCTTCGACTGAAACATGCTCAGTTAGCTGCCTACCTTTGTGGGATTTGCTTAACCCAGTGTACATGCTACATGAACTTGAAAAGTCACCTTCAGATTTGCTCCCAGCAGCACCAAATAACAACAAGATATATTTGCCAGGTTTGCCAATATGGAGATGACAACTTTAAGTGGCTTGAGAATCATGTGCTGGTTCATGATTTTTTATtggaagcttgtaaaaaacagtCTAAGATGTTTGACCCAGAAGATTACATTGATACTAATGAAAATTTGGATACTTTTAGTTTGTCTCCTATTTCCAAAGGACTGAATTGTGATGAGTGTGGCATGAGTGAATTCCAGTCATTcagagagttcagcactcatAGAAGGAATCATCATTCTATATTTCACTGTGATTTATGTAATAAGTTTTATGGACGCAACTCACATTTATGGAAACATGTGAATAGACTTCATAAGGGGCATCCAAGTATAACTTGTCAACTTTGTTATAAAACATCTGCTTCCAAATATCATCTTTCCCAGCActtcaataaaattcatttgaCCAAAGTTCCCAAGCAGAAAAGTGTAGAATCCCACTCAATTGAAAAGGATTGCAAGGAAGATTTCAAGTCACAACATTTTTCAGCATTATATTTAGAGTCTTTTACACATACATTTATGAAACAGGATATCATATCCCTGGAGGAGAAGGATATTTTTAAGGATCAGTATCAAGACGACAACTCAAACAATCAAACTTCAGATGCTGAGGAAGAACTTGCTATTAAGGAAGAGCTCAATAGCATAAATGAACATTTAGCTCCTAAAGAAATCGATTCATCACATGACCTCTATACAAATATCATAACAAATTACACACCACCCGTCAATGAAGGTGACTATAAATGCCCAAAATGTTCCAAAGCTTTTCACAAGAAGGTACTTCTCAAAAAGCATAAAAAGAACTGTAGACCAAAGATGCAAAAAGATTTACTAACACGTTGTAAAACATGTGCCAGAATATTCAAAGATCGTCAAAGCCTGACCAAACATTTGGTCAACTATCATTCTGAGTATATTTGcgaaatttgtaatgaaaaagtACAGAGTAAGTGTGAGATTGTATCTCATATTAGATTTCAGCATCCTGGTTGCAATTTGTTTTGCAAActttgtaaaaatatattgagaaGTAAGTATGATCTTCAGGAACACATGCATAATCACTTAGATTCTTATATATGTCAGTTCTGTGGAGATCCCTTGCCAAGCAAAATCAAGCTCAAAATGCACATTCTTAGTTTACACCGTAAGATTCTGAGTCTTTCCTGTGGCATCTGTCTGAAACTGTTTGAAACTCAACACATTCTCAGAGATCACGTTCGATTGGTGCATAAAAATCAATTGACACCACTCACTTCTTGTCCTGTATGTGGCAAAAACTATGGTTCGAAGTGGAAAACATATGACCACCTAAACAAGTCACATGGTAGAATATTTAAAGCGTGTAAGACTTGTCTGGATGTGTTTGACAATGATGCACAGTTTCAAGCTCATTGTGATGTTACTGGTCATGGATCTCAAAATAGTGGTGTCAGCACAAATAGAAACAGTATTATGGCTCACATTACATCTGCGATAAATGAGGTGGCAGCTAATAATGACCTTAATAATGAAACTGAGAGTGAAGAAGAAGTCGAGACTGACAGTGAGTATGAAAATGAACAGTACATGGAAGAACCAAAGATTCCTTTGTTGAACGATAAGAAAATGTCATTACTGGAAAAACGTTTATTAGGAAAAAATGCCACTGAGGATGATTGTAATCCAAAAAGTCTAATGGTAATCAGCAATAGGAAAAGCAAGTCGTCAGGACAAACTAAAAAAGCTACATCAGCTCCTAAAAAAGAAGAAGATCTAGAAAGAAATTATTCACCTTCCAATCTCCAGACAAATTCTTCCAAACGTACAGTGTATGTCAACAGCAACGATCCATCTTACTGCGAGATTTGTTCCAAAACATGGCCAGCAAAGAAGCATCTCTGGCAACATTACATTCGTTGTCATAAAACTGTTGCTGCCACTGTATGTGGCATTTGTCTCAAAACAAATGAGAACTACAAAACTTTACAGAAACATCTGCGCGAAAATCACCCTACCCTGTTGCATGGGCAAGGGTTTGGATCAAATTTCATTTGTAGAATTTGTGGAAGATATCATAATGCAAGTTCTAAGTTACGATTGCACATGGTGATACATGAAAACTTCGATTGGAAGTTGATAGATGAGCCAATGAATCAAACAGAAAGTACTAATAAGCCTAAAACCAATGGGTTCAATGATATTAAAGATGAGCCTCTAAAGGAAGACTTtgataatataaattatgaaagTTTGATAGAGCAAGTGGAGTGTTCCTCTCAGTCTGAACACGGGGAATCCGACAATGAAGGTTTGCAGACTGAAATTAAGCAAGAACAAGAATCATCTTCATCTGAAGAGGAAGATGATGAGGGAAGTGATGATTCAGCACTATCAGAGAACTCAGTTCAAACACGGGAGTTGAACAATATGATGGACAAAAAACGAATGATCAATGACGAACATAGCATAGCTTCTACCAGTGATGATTCAAGCTCTAGTGGGTCTGAAGAACACAATACAGCTAGTAAGAGTAATTCTACTGATGAAGATTGCTCTCGTGGATCCCAGTCACTTTCTTCCCAAAGTAAGTCCAATGATAGATCAAATTCGAACACTGAGGATTCTGCATTGAATAGTAATATTTTCAAGCGGAAACCCGAGGAATTGGATTCAGCTATAAAATCTATTAGTTACGAGTGTATGGAACCAGTTATCTGA
Protein Sequence: MEKEEIWWEPCRVKVSPYCLLPDTICGECTENVDNFYTFVKNCLQNIIILETQYDIQESSLKSKQKRDKGCYVDFQDRKINKGIQTDDCLDVLCGRNSTLEDYCLNFPQTILFLDKEEPLSNKELSLVKYDVDSDSSLEESAVNNGKVVLGEKLQSMADISKYVESLLSKNSFSTKSQYFDNSEKQIISEISERKNLKRKNEVIESCKPKIFKLDTSSRRKNKIPKKLDTQEVGKITTPPSETRKVDVYQTLSEIQNNDTDIQKNMTPQDEKLLSSLPQSCLLCDTHFSGPAALASHVFEAHGIDMAEVVSSGSGESSPEKHRKKIPNLVKIADLKKGDSADDQPLARQEEPPVLHPSFRCPNCPGIFTSKQDLMMHLRLKHAQLAAYLCGICLTQCTCYMNLKSHLQICSQQHQITTRYICQVCQYGDDNFKWLENHVLVHDFLLEACKKQSKMFDPEDYIDTNENLDTFSLSPISKGLNCDECGMSEFQSFREFSTHRRNHHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLSQHFNKIHLTKVPKQKSVESHSIEKDCKEDFKSQHFSALYLESFTHTFMKQDIISLEEKDIFKDQYQDDNSNNQTSDAEEELAIKEELNSINEHLAPKEIDSSHDLYTNIITNYTPPVNEGDYKCPKCSKAFHKKVLLKKHKKNCRPKMQKDLLTRCKTCARIFKDRQSLTKHLVNYHSEYICEICNEKVQSKCEIVSHIRFQHPGCNLFCKLCKNILRSKYDLQEHMHNHLDSYICQFCGDPLPSKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRLVHKNQLTPLTSCPVCGKNYGSKWKTYDHLNKSHGRIFKACKTCLDVFDNDAQFQAHCDVTGHGSQNSGVSTNRNSIMAHITSAINEVAANNDLNNETESEEEVETDSEYENEQYMEEPKIPLLNDKKMSLLEKRLLGKNATEDDCNPKSLMVISNRKSKSSGQTKKATSAPKKEEDLERNYSPSNLQTNSSKRTVYVNSNDPSYCEICSKTWPAKKHLWQHYIRCHKTVAATVCGICLKTNENYKTLQKHLRENHPTLLHGQGFGSNFICRICGRYHNASSKLRLHMVIHENFDWKLIDEPMNQTESTNKPKTNGFNDIKDEPLKEDFDNINYESLIEQVECSSQSEHGESDNEGLQTEIKQEQESSSSEEEDDEGSDDSALSENSVQTRELNNMMDKKRMINDEHSIASTSDDSSSSGSEEHNTASKSNSTDEDCSRGSQSLSSQSKSNDRSNSNTEDSALNSNIFKRKPEELDSAIKSISYECMEPVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -