Gqui015814.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000312.1:375257-399251[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.74 85 4.9 1.4 1 10 131 140 131 145 0.86 2 10 0.0063 0.73 11.5 0.3 3 23 305 325 304 325 0.97 3 10 0.98 1.1e+02 4.6 1.4 2 23 348 369 347 369 0.95 4 10 0.0001 0.012 17.1 1.4 1 23 375 397 375 397 0.98 5 10 0.001 0.12 13.9 0.1 1 23 403 425 403 425 0.97 6 10 1.1e-05 0.0013 20.1 1.8 1 23 431 453 431 453 0.97 7 10 1.4e-05 0.0016 19.8 0.6 1 23 459 481 459 481 0.98 8 10 6.7e-06 0.00077 20.8 0.2 1 23 487 509 487 509 0.97 9 10 0.00012 0.014 16.8 0.9 1 20 514 533 514 536 0.92 10 10 1.4e-05 0.0016 19.9 0.3 2 23 540 562 539 562 0.93
Sequence Information
- Coding Sequence
- aTGGAAGGAATTTGCTTTGAAGACTATATTGGAAGGAAGATAGCGAAAACCTGTAAAGAACCCATCAATATGGAATCTGCACCAATTGAATTCATAAAAATGGAGATCACAACTGAACCTGAAAATACTGATACATTTCCTCTACCCGACATAAAAGTGGAAACGCCAATTAATGAATACGATGAATTTGATCATCCCGAAGGaataaaaatagaagaaattGATTTGTTATATGAGGAGAAAAGTGGGAATGAATTTGATCAGCCCGAAGgaataaaaattgaagaaattgattTGTTATATGAGGAGAAAAGTGGGAAGGCTGAAAATCAACTTGATGAGTCGAATAATTCAGATTCCCATCTGGAGAAATCCAAGGAAGACAAACCATTCAAATGTGAAGTTTGTGGAAAAGTGCTACATAAAAGTTGTGCAGAAAGACTAAAATTAAGAAGTAATGGAGACCATAAAGTGGAATGCTGCCAAAGTGAGGTTAATCAGAGGTTATCAGTTGCAGATTCCAAAGTACTCCTACTCGAAAAACAACAAGTGGAACTTGAAAATAAGTACCTAAAAGAACTGTTAGATGAAAtgaaagacaaaaataatatcccaaaAATCAAAACAGTTAAACAGCAAGAACACAAACCAACAGTCCAGCGAGGAAACAAACCAACCCTACAGCAAGAAGACAAATCAACATCACAGCAGGAAAACAAACCAACTGAACAGCAGGAAAACAAACCAACTGAACAGCAGGAACTCAAACCATCATTTAGTAGTAAACTACGACAAAACTTAAGACCAGTTGGTCTACCCTCTCATATACAGAGGGCAGCACCTTACACCTATTTTCCCATCATGCTCACGAAGAACAGACACCTTAGCTACCATTTCAAAAAACCCGTCGCTTGTTCGATATGTGGAAATATCTATCGAAAGAAAAAAGACTTTTTGGATCATTATGCCACCCAcaatattgaaaaacataaaGTTACAAGCACGGTGACAGTAAATGAGAGGGTCATCGGTAAACAATCCACGTGTCGCTTTTGTTCAGAACATTTCTTATTGAAATCGGATTTAGCAGCCCACGAACAAAGCCACAGAGGCAAGAAGATTTACGATTGCAAGATATGTCTGAGGAAGTTTCCCACCCGATACCAATTCGTCAGGCACGAAAGAATCCACACCGGCTCGAAACCGTTTGAATGCGCGCAATGCCCGAAAGCCTACGCCCACATGGGGGCTCTGAACGTTCATCAGGTCGTCCACAGGGGCGAAAAAAAATTCCCGTGCGAACACTGTCCCAGAACGTTCTTCTACAAGTCCGGCCTCGAGAGACACCTGCTACAGCATCAAGGGGGCTATCCCTTCAAATGCACGCATTGTTCCAAAAGTTACCCAGACAATCCCGCATTGGCTGCACATCTGACGACGCATACCGGAGAACGGCCATTCTCTTGCGTTGTCTGTTCGAAAGCGTTCCGTCGACAGGCAGACTTGACGCAGCATTTGGCTATTCATAACGAGCGCCCCTTCGCGTGTGCCATCTGCGAAAAGAGATTCAGTAGGGGGTCGCAGCTGAAGCGGCACCACCCTGTCCATGTGAAGCTGAAATGTGAGGTTTGTCCGAGAACATTCCAAAAGAGCTCCTGGCTGAAGAAACATATGGCCGGGGAACATTCAGATAAGACACCTTga
- Protein Sequence
- MEGICFEDYIGRKIAKTCKEPINMESAPIEFIKMEITTEPENTDTFPLPDIKVETPINEYDEFDHPEGIKIEEIDLLYEEKSGNEFDQPEGIKIEEIDLLYEEKSGKAENQLDESNNSDSHLEKSKEDKPFKCEVCGKVLHKSCAERLKLRSNGDHKVECCQSEVNQRLSVADSKVLLLEKQQVELENKYLKELLDEMKDKNNIPKIKTVKQQEHKPTVQRGNKPTLQQEDKSTSQQENKPTEQQENKPTEQQELKPSFSSKLRQNLRPVGLPSHIQRAAPYTYFPIMLTKNRHLSYHFKKPVACSICGNIYRKKKDFLDHYATHNIEKHKVTSTVTVNERVIGKQSTCRFCSEHFLLKSDLAAHEQSHRGKKIYDCKICLRKFPTRYQFVRHERIHTGSKPFECAQCPKAYAHMGALNVHQVVHRGEKKFPCEHCPRTFFYKSGLERHLLQHQGGYPFKCTHCSKSYPDNPALAAHLTTHTGERPFSCVVCSKAFRRQADLTQHLAIHNERPFACAICEKRFSRGSQLKRHHPVHVKLKCEVCPRTFQKSSWLKKHMAGEHSDKTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -