Gqui004995.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- salm
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010001879.1:182559-217002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.8 3.2e+02 3.1 0.2 2 19 44 61 43 63 0.91 2 11 6.1e-06 0.0007 21.0 0.9 1 23 363 385 363 385 0.98 3 11 8.3e-06 0.00095 20.5 1.9 1 23 391 413 391 413 0.98 4 11 0.076 8.7 8.1 3.8 2 23 728 749 727 749 0.98 5 11 5.2e-08 6e-06 27.5 0.6 1 23 755 777 755 777 0.97 6 11 7.3e-05 0.0084 17.6 2.6 1 23 787 809 787 809 0.98 7 11 0.093 11 7.8 4.5 2 23 1079 1100 1078 1100 0.97 8 11 0.055 6.3 8.5 1.0 1 14 1106 1119 1106 1120 0.93 9 11 10 1.1e+03 1.4 0.3 13 23 1168 1178 1166 1178 0.89 10 11 1.7e-06 0.00019 22.7 4.0 3 23 1278 1298 1276 1298 0.96 11 11 2.4e-07 2.8e-05 25.4 0.9 1 23 1304 1326 1304 1326 0.98
Sequence Information
- Coding Sequence
- ATGCACGCGATGTACTCCGCAGAGCAGACGTACCAGCTCTTGCGATTGTTCTCTCAGTTAGCTTACAATAGTGTTTTGTTCGCAGATGTTCCGAGTTTGGACGCGCCGTCGGATTTACCCGAAGTTCTCATGTGCCAACGTTGTCAAGAGCAATTCACCGAATCTCAGGACTACGTCTCGCACAAAGCCGAATGCGACAAGAAGGCCATCAAGCACGACGACCCCGCACACTCCGATCCGGAGGACATGGTTGTATCTGAGGAGGACGAAGAGGAAGATGAATCGAATGGGAAGAGCATAGAGCGCATGAGCAAACACCGTCAGGATGCCGCTAACAACAACAACAGCGGCGAAGAGAGCTCTCCCGACGAAAATACTCAGAGGATAGGTTTTCCGTTTCCTACACCCGCAGCTCCGGGGCACGTCACACTGGAGGCGTTGCAAAACACCAAAGTTGCAGTCGCGCAGTTCGCTGCCACCGCTATGGCGAACAATACTGATAACGAAGTGGCTCTGCAAGAACTGGCAGTATTACAATCGACATTATTCACTTTACAGCACCAGCAAGTTCTCCAGCTGCAGCTCATAAACCAGCTTCAGCACCAACTGCAGATAGATCGGACAAAAGAGGAGGAGGACCCTTGTCCCAATTCACCGCCGCCATCGGAAAACGAGGCTGAAACTACTCCAGTGGAATCGCCGCCTGTACCTCAAGTTTTACACGAATCTCGGGAACCTACTCCGATAACGTTGCCCCCACCAGTTGTACAGCCTATTGCACAAACACAGCCAGTAGCAGAGCCTCTTCCTGAAGTCAAGGCTCCTCAATGCCTACCTCCGCAAATTCAACCTCCAATGTGTTCTATATCATCATCTTTAGCTTCTACTATCATCACGCATAATGACGAGCAACTTACGGAGCAGCCCAACACACTGGAAATGTTACAAAAACGAGCGCAGGAAGTACTAGATAACGCCAGTCAAGGGCTACTAGCTACAAATTTAGCAGACGAGTTGGCCTTCAGGAAAAGTAAAGGCTCTATGTCTCCGTATGATTCTAAAGGACGCAACGAGCCTTTCTTCAAACATCGCTGCAGATATTGCGGCAAAGTGTTCGGTTCAGATTCAGCCCTTCAAATACATATCCGTTCCCATACCGGAGAACGACCCTATAAGTGTAACGTTTGCGGAAGTCGATTCACAACGAAAGGAAACTTGAAAGTACATTTCCAAAGGCACAGTCAGAAATTCCCTCATATCAAAATGAACCCCAACCCGGTTCCAGAACACCTCGATAAGTACCATCCTCCACTGTTGGCGCAGCTTGGACAATCATCTCTCTCGCCTGGCGGCCCCCCTCACCCTCCCCATCTGGGCTTTCCCGGAGGACATCACTTTCCACCATCACCTCTACCCATATTCCGTCCCACGGGTCCACCACCACCTGAACTCATGAACAGCAGGCTTCAACCATCGCCGCATAGGCTTCTTGATGCAACAGCAAGGCTTTTTTCTCCCCATCCACTGTTTCTCAAGAGGGAAGAACAAGAAACCCCTGCGGATCTGAGCAAACCCCAGAGATCGCCCACGCCGATCGAAGATAAAAGCCAGCTTGATCCGGGTCTTGGAGAAAAGGAAGAAAGAGTTTCGAAAGAAGAACATACAGCACCAATCAACATTCCGCAGCTGACTCCGAAACAAGAACCTGTTCTGACCGATACCGAAAATGAGATTGAACAGGAGAGGTATACCTCACCTATACCGTACGACGATTGTAGCAATAGCAGTAAATATAGTAATGGTGACTTGTCGGAACATAGGAGTCCGGGTGGCGAGATATCTGAAAATATGCAGGACGAGCCTGAAAATTTGTCCAACAGAAGCAACAACTCCATGACTGTGCCGTTGAGTATAGCCACTGGACAGAGACTACCGGCGAATTTTTCATTCGGAAACGCGGCTTCACCACCAAGCAGTACTTCCTCTGGCTCACTGGGGCAGTATCCAATCAACCCATTACACGACATCACGAAAGATCCTTCGATTTATACCAACCTATTACCACGACCTGGCAGCAACGATAACTCGTGGGAAAGTCTCATCGAAGTTACGAAGACTTCAGAGACGAGTAAACTACAGCAGCTGGTGGACAATATAGAGCACAAACTTTCAGATCCGAATCAGTGTGTGATTTGCCATCGGGTGCTATCGTGTAAAAGTGCTCTGCAAATGCATTACCGTACACATACAGGTGAACGGCCATTCAAATGTAAGATATGCGGACGAGCGTTCACAACGAAGGGCAATCTGAAAACCCATATGGGGGTCCATAGAGCCAAACCTCCGATGAGGGTTCTGCACCAGTGTCCTGTATGCCACAAAAAATTCACGAATGCCCTGGTGCTTCAACAACATATCCGCCTCCATACAGGCGAACCCACTGATCTCACCCCCGAGCAGATCCAAGCAGCAGAAATAAAAGACTTTCCTTCGCCCGGTGGTTTTCCAAGTCTCTCCAATTCAATGCATCCTTTCCTCGGACCAGGGTTCTCCGTTCCTGGCCTGTCTCCTCTGGGGCAATCCGGCATTCATTTCAATATGAAATACGACAGGGACATCAAGTCGGAGCATGGAAGTATGGACGATGACGACGATGAAGATGATGATATGATGAGTACGTCGGAGCACCAGAATATGCCGCCATTTTCCACTTCGCCTCCTGAGATGCAGAGTGGTTCAATACCGCCCGTGAGTACAACCCCATCGCAGTATTCCATGGGTGGCTTGAGTTGTTCGGCGGAGGATCTCTGCTCCAACAGGATCCCGACATCGACCCCGCCGCCCATGCAGAATGGAGAGAAGTCTCCAAGTCAATCAGGAGTTACGAGTCCTGAGAGTTCAGAGCTACGACCGTCGCCAAATCGAACTCCCGTCCAAATTCCTCGACCTCCATCATCCCAGCAAGCCGGTAGTCCCACACCGTCAGATAATTCAATGGGAGCGTTGGATTTAACACCGAGGAGCCAACCTTCCATCACAAGTCCGGGCCCAACTAGCCTCAATGGAGCTCCGCCGCTTTTTCCTTCCTTTGGACTTCTGGCATCCTCTGGTGGCCAGTCCCCTTTGATGTCTTCAGCTTTGTCCTCTTTGACGTCATCTGTCCTGACATCCACATCTTTCAGTCCACTGAGGTTGGCTGTTGGTCCGATTGGAAATATGGGAAGAGGAAACACCACCTGCAATCTCTGTTTCAAGACGTTCGCCTGTCATTCGGCCCTGGAAATCCACTACAGGAGCCACACCAAGGAGCGGCCCTTCAAATGTACAGTTTGCGATCGAGGATTCTCTACGAAGGATGGTTGTGTGTGTACGCAGAGGCGTATCCAGGACGAAGTGGAACCATGGAGGGCACGAAAACGAAAAGCTGCCCTTCTCAAGTCCATTCCTTCTGTATTTCCCTTACCGATGACCCCTGGATACGCCTCGAGTTGGATGCAAACGGCGGGTAACATGAAGCAGCACATGCTGACGCACAAGATTCGCGACATGCCGCAGCATGTGTTCGATAACAAAGCCCCCTCCTTGAGCGGGGACGACTCCACGCCCTTACCCCCCAGTTTACCCCAAAGAGAAAATATATCCAGCGAGGGGGAGCCTCAGCAGATTCCGCAACAGCAGCCACAGCCTTCGCAAATCCTGCACCCCCCTCCGCCGCAGGTGAAGCCGGATCTGGAACCGCAGCCAATCAAAAGAGAGCCAACCGAGACTGAACTTCCTTTGCCCAAGCGTCCGCCAAGTGAGTTCTTCTGCTTACAATCAAGTAAGCATTTGTGCCACGTGTGCAATAAGAACTTCTCCTCCAGCTCGGCCCTCCAGATACACATGAGGACGCATACGGGAGACAAGCCGTTTCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAACCTCAAGGTACACATGGGAACACATATGTGGAGCAACGGAGCATCACGACGAGGTCGTCGCATGTCCCTCGATCTGCCCCCCATCCCCATGACCCCCAAGGATTCCGAATTTCTCCAGCGGAGGCCAGATCTTTTCTACCCGTACCTACCGGCCCCGTTCCTTAATGGGATGCAACAAAAGttgaacGAGATTTCCATGGTGCAAAACAACCAGAACGGACTCGCTGGCGCCGGCAAATACGGCGGACTCCTCGGCTTCGGCTACCCGCCGCCCGAAGCCATCCGATCTCAGGCGAGTTCTCCCGAGCGAGGCGAGAGACCGCCCAGTCACGAACCCGATACCCGAGGTCTTTGGGATCTGCATTTCGAGAGAAAGAGTGCTGCGGACGCCCCCAGGGAAGACCTTTTACCAGCCACAAGGGAAGGTCTGGCTGCCTGA
- Protein Sequence
- MHAMYSAEQTYQLLRLFSQLAYNSVLFADVPSLDAPSDLPEVLMCQRCQEQFTESQDYVSHKAECDKKAIKHDDPAHSDPEDMVVSEEDEEEDESNGKSIERMSKHRQDAANNNNSGEESSPDENTQRIGFPFPTPAAPGHVTLEALQNTKVAVAQFAATAMANNTDNEVALQELAVLQSTLFTLQHQQVLQLQLINQLQHQLQIDRTKEEEDPCPNSPPPSENEAETTPVESPPVPQVLHESREPTPITLPPPVVQPIAQTQPVAEPLPEVKAPQCLPPQIQPPMCSISSSLASTIITHNDEQLTEQPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSQKFPHIKMNPNPVPEHLDKYHPPLLAQLGQSSLSPGGPPHPPHLGFPGGHHFPPSPLPIFRPTGPPPPELMNSRLQPSPHRLLDATARLFSPHPLFLKREEQETPADLSKPQRSPTPIEDKSQLDPGLGEKEERVSKEEHTAPINIPQLTPKQEPVLTDTENEIEQERYTSPIPYDDCSNSSKYSNGDLSEHRSPGGEISENMQDEPENLSNRSNNSMTVPLSIATGQRLPANFSFGNAASPPSSTSSGSLGQYPINPLHDITKDPSIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKDFPSPGGFPSLSNSMHPFLGPGFSVPGLSPLGQSGIHFNMKYDRDIKSEHGSMDDDDDEDDDMMSTSEHQNMPPFSTSPPEMQSGSIPPVSTTPSQYSMGGLSCSAEDLCSNRIPTSTPPPMQNGEKSPSQSGVTSPESSELRPSPNRTPVQIPRPPSSQQAGSPTPSDNSMGALDLTPRSQPSITSPGPTSLNGAPPLFPSFGLLASSGGQSPLMSSALSSLTSSVLTSTSFSPLRLAVGPIGNMGRGNTTCNLCFKTFACHSALEIHYRSHTKERPFKCTVCDRGFSTKDGCVCTQRRIQDEVEPWRARKRKAALLKSIPSVFPLPMTPGYASSWMQTAGNMKQHMLTHKIRDMPQHVFDNKAPSLSGDDSTPLPPSLPQRENISSEGEPQQIPQQQPQPSQILHPPPPQVKPDLEPQPIKREPTETELPLPKRPPSEFFCLQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISMVQNNQNGLAGAGKYGGLLGFGYPPPEAIRSQASSPERGERPPSHEPDTRGLWDLHFERKSAADAPREDLLPATREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047711;
- 90% Identity
- -
- 80% Identity
- -