Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010000143.1:1025233-1058563[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.012 1.4 10.6 1.8 2 23 112 133 111 133 0.94

2 17 0.43 50 5.7 2.6 1 23 139 161 139 161 0.97

3 17 0.0073 0.84 11.3 5.1 2 23 165 186 164 186 0.97

4 17 0.24 27 6.5 0.1 2 23 193 214 192 214 0.77

5 17 6.8e-05 0.0079 17.6 2.0 1 23 223 246 223 246 0.95

6 17 0.026 3 9.5 0.9 3 23 257 277 255 277 0.97

7 17 1.3e-05 0.0015 20.0 0.1 1 23 283 305 283 305 0.98

8 17 0.08 9.3 8.0 0.4 1 12 311 322 311 324 0.92

9 17 0.0027 0.31 12.6 1.2 2 23 354 375 353 375 0.97

10 17 0.04 4.6 8.9 0.7 1 23 381 403 381 403 0.97

11 17 0.0004 0.046 15.2 1.0 1 23 409 431 409 431 0.98

12 17 2.8e-05 0.0032 18.9 0.9 1 23 437 460 437 460 0.98

13 17 0.017 2 10.1 3.9 1 23 472 495 472 495 0.93

14 17 0.0078 0.9 11.2 1.1 3 23 506 526 504 526 0.95

15 17 0.00024 0.028 15.9 3.9 1 23 532 554 532 554 0.98

16 17 2.3e-05 0.0027 19.1 0.3 1 23 560 582 560 582 0.99

17 17 0.11 13 7.6 0.5 3 19 590 606 589 609 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.012	1.4	10.6	1.8	2	23	112	133	111	133	0.94
2	17	0.43	50	5.7	2.6	1	23	139	161	139	161	0.97
3	17	0.0073	0.84	11.3	5.1	2	23	165	186	164	186	0.97
4	17	0.24	27	6.5	0.1	2	23	193	214	192	214	0.77
5	17	6.8e-05	0.0079	17.6	2.0	1	23	223	246	223	246	0.95
6	17	0.026	3	9.5	0.9	3	23	257	277	255	277	0.97
7	17	1.3e-05	0.0015	20.0	0.1	1	23	283	305	283	305	0.98
8	17	0.08	9.3	8.0	0.4	1	12	311	322	311	324	0.92
9	17	0.0027	0.31	12.6	1.2	2	23	354	375	353	375	0.97
10	17	0.04	4.6	8.9	0.7	1	23	381	403	381	403	0.97
11	17	0.0004	0.046	15.2	1.0	1	23	409	431	409	431	0.98
12	17	2.8e-05	0.0032	18.9	0.9	1	23	437	460	437	460	0.98
13	17	0.017	2	10.1	3.9	1	23	472	495	472	495	0.93
14	17	0.0078	0.9	11.2	1.1	3	23	506	526	504	526	0.95
15	17	0.00024	0.028	15.9	3.9	1	23	532	554	532	554	0.98
16	17	2.3e-05	0.0027	19.1	0.3	1	23	560	582	560	582	0.99
17	17	0.11	13	7.6	0.5	3	19	590	606	589	609	0.81

Sequence Information

Coding Sequence: ATGGATGATATTCGTTTCATAAAGAAGTACATGCTTCAGACcagGTTCATAAAGGAAGAGATTGAAAATGATCTAGAGCCTGCGAGAAATCAAATCCGAAAACCTAAAAAAAGGGTGCAGGTTTCGGACCCTGATCCAGATTTTTTGATCGAAGAAAAGAAACCCGTCAAAAAAAGAAAGTCCCGAAACTCTGAGGAGCACGCTAAATCCTCTCCCGAGAGCGATCACGAAGATGATCCTAaaagagagtcatcaagaaaacgaaaaaatatcaaaCTCGACTTGATTAAAATCGAGAAGTTCGTGAACCTCAACGAGGTGAAAGAACCACTCGTGTGCGAAGTCTGCAAAAAAACTTTCCCGTCCCACGTGGACCTTGGTTTGCACTCGAAACACCACAACGAAGATTGTACCTACTCTTGCCATCAATGTGACTTCAGAGCAGAAAAGAAGGGAGTTTTCAAAAACCACGTCCAGAATCACGACATGTGGAAATGCGAAAAGTGCAATAAAATCTTCAGAAATAAACGCTGCGCGTTAAAACACTCAAAAACCCATTTTGCGAAAAGTTTCGTACAATGCGAAATATGTGGGAAAGACGTCAGAACTGCATACCTGGACACGCACAAAAAACTTGTCCACGCTGACGAAAAGAACGTTCTCATCTACAAGTGCACTCTGTGTGACAAATCCTACAAAAATTCCACAGCTCTCAAGGGCCACTACTCGTACAATCACAAGGACTACGGCATCGacacatctgtcatttgtgacaTTTGCGGTATGAGGCTGTCATGCAAGGGGAAACTCGCCCAGCACACTAGGACCCATACTGGAGACAGACCCTACCCTTGCACTGTTTGTCCTAGGAAGTTTATATCGAAAGACATCCTGAGGGCTCATATGCGAGTTCATACTGGAGAAAAACCATACGTGTGCATGTACTGCGGAAAGAAGTTCGCACACGGCGCCCCCTATAGGTCAGAGAAGAGGGTGAAACGTAAATACAAGAAGAAAAAGCTGTCCAAAATAGCCCCGACAAAACTAGGACAGCCTTTACGATGTGAAAGTTGCCCGGAATCCTTTACAAACCACGTGGACTTCGCATTACATTCCAAAACCCATAACAAGAAAGGTCTATATTCCTGCCACCAATGCGAATTCAGCGCAACATCAAAAGCCACAATCGAAATCCACGTACGAGATCACGAAAATTCCAACCTGTACAGGTGTGAGATTTGCAATAAGGCTTTCAAGGTTAGCACCCATGCTGTGGATCACAAAAATATACACACGGGCGAAAAACCGTATAAGTGCGAAATTTGTGGAAACCAGTTCTCTTCTGCTAAACTACTGAGTTCGCATAGGATGACGAAGCATTACGAAGTTTTGACGGGCAAACCTCTGGTGAAATACGACTGCAAAATCTGCAACAAACACTACATGTCCTTTCCCGGCCTGAAACACCACATGTACGCCAAGCACAACGAAACCGGCGAGGATAAATCCATCATTTGCGACATCTGCGGAAAGAAACTGAAAGATCGCAGCAAGTACAAGTTCCACAAGAGGATCCACTTGGGCGACAAGCCGCACTCCTGCTCTGTGTGCgcgaaaaatttcatcaaaaaggAGTGCCTCGAGGAGCACATGCGCACGCACACCGGGGAGAAACCGTATCGTTGTGAGGTGTGCGGAAAAGCGTTTGCGCAGAGGGCGCCCTATTGGTACCACAGAAAGACACACACCGGGGAAAAACCTAATATCTGTCAGTATTGCGGGAAGGGTTTCATTTCGAAACCTGTGAGGAATCACCACTCGAAGAGTTGTTTCGTGAAAATGAAGAGTTTGGAGGGCGTCACATTTTAG
Protein Sequence: MDDIRFIKKYMLQTRFIKEEIENDLEPARNQIRKPKKRVQVSDPDPDFLIEEKKPVKKRKSRNSEEHAKSSPESDHEDDPKRESSRKRKNIKLDLIKIEKFVNLNEVKEPLVCEVCKKTFPSHVDLGLHSKHHNEDCTYSCHQCDFRAEKKGVFKNHVQNHDMWKCEKCNKIFRNKRCALKHSKTHFAKSFVQCEICGKDVRTAYLDTHKKLVHADEKNVLIYKCTLCDKSYKNSTALKGHYSYNHKDYGIDTSVICDICGMRLSCKGKLAQHTRTHTGDRPYPCTVCPRKFISKDILRAHMRVHTGEKPYVCMYCGKKFAHGAPYRSEKRVKRKYKKKKLSKIAPTKLGQPLRCESCPESFTNHVDFALHSKTHNKKGLYSCHQCEFSATSKATIEIHVRDHENSNLYRCEICNKAFKVSTHAVDHKNIHTGEKPYKCEICGNQFSSAKLLSSHRMTKHYEVLTGKPLVKYDCKICNKHYMSFPGLKHHMYAKHNETGEDKSIICDICGKKLKDRSKYKFHKRIHLGDKPHSCSVCAKNFIKKECLEEHMRTHTGEKPYRCEVCGKAFAQRAPYWYHRKTHTGEKPNICQYCGKGFISKPVRNHHSKSCFVKMKSLEGVTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -