Gqui013269.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000558.1:21583-33634[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9e-05 0.0045 18.4 0.5 1 23 109 132 109 132 0.97 2 11 0.44 51 5.7 0.1 2 22 145 164 144 164 0.91 3 11 6.7e-06 0.00077 20.8 4.0 2 23 216 238 215 238 0.96 4 11 1e-05 0.0012 20.2 1.2 1 23 244 266 244 266 0.98 5 11 4.4e-05 0.0051 18.2 2.0 1 23 272 294 272 294 0.96 6 11 1.3e-05 0.0015 19.9 0.9 1 19 300 318 300 320 0.97 7 11 6.9e-05 0.008 17.6 0.5 1 23 331 353 331 353 0.99 8 11 0.0003 0.035 15.6 4.1 1 23 359 381 359 381 0.97 9 11 0.0015 0.18 13.4 0.8 1 23 387 410 387 410 0.97 10 11 3.9e-06 0.00045 21.6 0.5 1 23 424 446 424 446 0.98 11 11 9.7e-05 0.011 17.2 3.3 1 23 452 475 452 475 0.97
Sequence Information
- Coding Sequence
- atgataggtttttgttcaatttgtttGCGAAGTGATATCAGTGTTATAGAAATTAACGAAAATGGACCAAATAATAGAGATATattggaaaagttgaaaaaatgtgTTCCAGAAGTGgaATGGTATCCTTCCCTTAAAATATGTGAACTCTGTAATGAGGAATTGGAAAAAGCCTATAATTTCAAAACGTTGTGCATCAGTTCATATCGTTCCTGGAGAACAATACCCCTTCCTTGCAATAAGGTAGAAACCACTTCAGATTCAGAAAATGAGTTGCTGGAGGATAGTAGCGAAAGATCATCTGCGGAAGAATATAAATTCAACTTTGAATGTTATGATTGCAAGAGAgtattcaaaacaaaaatccTTCTAGAAGAGCATGCAAAAAGTGAACATGAAACAAAATCAACTGATACAGATGTAAATCAGAAGCCGTGTGGAATTTGTGGGAAACTATATGCTGCTAAGAACATAAAGAGGCATATAAAAACTTGTGAGAACAGAAGTGAGCGGAATCCTGAAAAGTACAGTGGCAGTCAATGTGTTAGAAATGATATGCAATCCATATACGTTTATGAAATTATTCTTGTAGCAAATGGAAAGATTTATGGATGTGAGAGGATAATTAAAGAACAAATAGAATCCACTTGTTCTTTTTGTGGTACACATTTTACTAATAAATATCTTCTGAAAAGACATATGAAAAATGTTCATGCCACTGAAAAGAAATTCAAATGTGAATTTTGTGAGAAAACATTTGTATCAGCGGTTTATCTGAATGCTCATAAAAGGTATCATTCTGGGGATCGACCTCACATATGCCCATTTTGTGGAAAAGGATTCATAACAACAAGCGATCTCTATCATCATGAGAAAATCCACGTTAATAAAAGAGCATACACATGTGAAAAATGCCCGAAGGCTTTCAATACTTCCTCAGACCTGCACAAACACAACATATGCGTTCACATAGATCGGTCACAATGGAAATATGTCTGCAACTCATGTGATAGAAAGTTTCCCTTGAAAATTAATCTTGACAGCCATATTAAAACACACACCGGTGAAAAGAATTTTGCCTGTCACTTATGTGATAGGAAATGTATCAGCAAGTCGGTGTTGAGAAGCCATATCCAGACTCATTCAAATGTAATTTCGTTCAAGTGTACTGTGTGCTTACAGGCTTATAAGTATAGGAAGTCGTTGAATCTGCATTTGGCTAAGGCACATGGAATTGGAAATGCTAAAGTACCAGTATTGGTTAAGAAATTCATTTGTCCTCTTTGTTCGAAGGCTTTTTCTGCTAATAACAAATTACAGAAACATATTAGATCACATGACGGTGTAAAGCCCTTCAAATGCCTCGAATGTTCTAAATGCTTTGCTGATAAGTCTTACATCAAAACACATCTGAAAAATGCACATAATATTCCAAAAGACGAATATTTGTAG
- Protein Sequence
- MIGFCSICLRSDISVIEINENGPNNRDILEKLKKCVPEVEWYPSLKICELCNEELEKAYNFKTLCISSYRSWRTIPLPCNKVETTSDSENELLEDSSERSSAEEYKFNFECYDCKRVFKTKILLEEHAKSEHETKSTDTDVNQKPCGICGKLYAAKNIKRHIKTCENRSERNPEKYSGSQCVRNDMQSIYVYEIILVANGKIYGCERIIKEQIESTCSFCGTHFTNKYLLKRHMKNVHATEKKFKCEFCEKTFVSAVYLNAHKRYHSGDRPHICPFCGKGFITTSDLYHHEKIHVNKRAYTCEKCPKAFNTSSDLHKHNICVHIDRSQWKYVCNSCDRKFPLKINLDSHIKTHTGEKNFACHLCDRKCISKSVLRSHIQTHSNVISFKCTVCLQAYKYRKSLNLHLAKAHGIGNAKVPVLVKKFICPLCSKAFSANNKLQKHIRSHDGVKPFKCLECSKCFADKSYIKTHLKNAHNIPKDEYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -