Gqui024273.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000171.1:570234-578704[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1e-05 0.0012 20.3 1.0 2 23 13 34 13 34 0.97 2 15 0.00089 0.1 14.1 0.4 2 23 37 59 37 59 0.95 3 15 5.6e-06 0.00064 21.1 0.5 1 21 97 117 97 118 0.94 4 15 0.00058 0.067 14.7 0.3 1 23 126 148 126 148 0.93 5 15 0.0034 0.4 12.3 0.5 1 23 154 176 154 176 0.97 6 15 3.9e-05 0.0045 18.4 2.6 1 23 182 204 182 204 0.97 7 15 1.7e-05 0.0019 19.6 2.0 1 23 210 232 210 232 0.99 8 15 0.00058 0.067 14.7 0.8 2 23 428 449 428 449 0.94 9 15 0.41 48 5.7 4.1 1 23 463 486 463 486 0.96 10 15 0.00051 0.058 14.9 0.4 2 23 491 514 490 514 0.95 11 15 1.3e-05 0.0015 19.9 1.5 1 22 524 545 524 545 0.95 12 15 4.8e-06 0.00056 21.3 3.3 1 23 553 575 553 575 0.99 13 15 0.2 23 6.7 3.0 2 23 582 603 581 603 0.96 14 15 0.015 1.7 10.3 0.6 1 23 609 631 609 631 0.94 15 15 2.5 2.9e+02 3.3 4.1 1 23 637 659 637 659 0.96
Sequence Information
- Coding Sequence
- ATGCATTCGCCAGAGGAAATAAACGATGGAAACCCTACATGTCCAATctgcaaaaaaaatttcagaaccCTTGTGTCACTTCAAAAACATGAAAAAGTTCATTATCCCCAATGTGATAAATGTGGCGAAAATTTCGAAACCGTCAAATTACTTCGAACTCACGTCAAGGAAGAACATCCTAAAgataaaCAATACAAATGCAGAGTTTGTCCAAACTCTTTATTCCCCACCGAAAAAGACTATTTAATGCATATTTGCAAAGACCACGGAGGAAAAATCATAGAATGCCACATGTGTAGCGTCTGTGGAAAAACATTTCGCACAAGTTCTGGATTATCACTGCATATTAAATCGAAATGTGGcactgaaaaaaatttcatttgtataGAATGTGGGAAAAAATTCATGTCACCTGGATCTTTGTACACTCATCTGCAGAGGCACAAGGGAGAGAACAGTTTCATGTGTAGGTTCTGCGCCAAGCTTTTTGGTACTTCCGGACAGTTGAAGGTGCATGAGAGGATTCATACACAACAGAAGGATTATATTTGTAATGTTTGTGGTAAAGGCTTTTGCCACCGCCAGAGCCTGGTAACCCACATTTCCCTGCACACCGGTATCAAACCCTACCAATGCGAAGGCTGCGGTAAGTCATTCAGCTGTGTTGGAAACCTACTAAAGCACCGAAGATCCCATGCAGAAAGCTGTGGGTCGGTACCAATGACCAGTCACAGAGTGCAAAACCCTTCTACAAAAATCAAGGTTAAAATAAATACTCCAGATTCAACTAAATTGAAGAGGGCGCGCATGAAAGATGAACTGGAAAAGAAATTTGCCAAGTTGAATGTTGAACAAGAGTTCAAAGGAAATATTTCTGGAAAGGAGGAGAAAATGGATGGAGAAATGGAAAGAGGGTACTTGCTGGATGGATTTGGCAACAATGAGAAGTTCTTTGATGCTAATTCAGAAGTTGATATTATGGGGGTAACACAGAAGACTGAAGTATCGAAAGGAATTGTATCAGAAGATATTCAAGAATTGAATGTTACCAAAACGAATAGTGGATCAGAAATTACCTCAACATTTCTCAATACTGATTCTGATGTTCACAAAGTCATGGAGAAAAAAATTGGAGGCTCTCCAGATTACAAGCAGGATGATAATAGTGACATAATAGAAGAGATAGTTCCTAAAATGACGAGCAAAAGAAAAAAGGCCAGAAACATTGAGGATGCTATGGGAATTTATATCAAGGAACGAAACCATGAAGGCGAAGTTGCTGTTTGTAAGTATTGCAGAAAAGCATTCAGCAATTTAAGGGGGTTGTACAAACATGAACAAGATCACGAGAATAATACTGGGGATGATAAATCCAAAAAACTTCCATTCAAGTGCAGCTGTTGCAAAATGAGGTTTGAGACAAGAGATAAGGTCAAGGAACATCAGGAACGAGTACATATAGATGAGCTGGTTTGTCACGAATGCGGCGATAAGATTTTCTCAAACGTGGATTCCCTCAAGTCCCACCAACAAATTCTCCACAAGGGCATCCCACGCAGAGGCTACGTTTACATCTGCGACAAATGCGGCAAATGTTACAAGCAAAAAGCCCTACTGAGAACCCACGTTAACACGAACTGCGGTACAATTTCCCGGTTCCAATGTACCGTTTGCCAGAAAAAATTCTCCACTCCGCACACTCAAAAAGCCCATATGCGCGTGCATAATTCGGAAAAAGAAATGTCCTGTAGGTTCTGTAAGAAGGGCTTCCATTGGAAGGGGCAGTTGAAGGTCCACGAAAGGTCTCATACCGGTGAGAAACCGTATACTTGTCTTTTTTGCCCTAGTTCATTTGCGTACCGCGATAGTTTGATAACGCATAGTACTCTGCATACGGGGGTCAAACCGTATGTGTGCAAATGTTGCGGGTGGAGGTTTTCTTGCGTGGGGAATTTCGCGAAACACAAAGTTACGCATGGAAGTACTTGTGGGGCTTGGTATGGGGAAAATGTGAAATGA
- Protein Sequence
- MHSPEEINDGNPTCPICKKNFRTLVSLQKHEKVHYPQCDKCGENFETVKLLRTHVKEEHPKDKQYKCRVCPNSLFPTEKDYLMHICKDHGGKIIECHMCSVCGKTFRTSSGLSLHIKSKCGTEKNFICIECGKKFMSPGSLYTHLQRHKGENSFMCRFCAKLFGTSGQLKVHERIHTQQKDYICNVCGKGFCHRQSLVTHISLHTGIKPYQCEGCGKSFSCVGNLLKHRRSHAESCGSVPMTSHRVQNPSTKIKVKINTPDSTKLKRARMKDELEKKFAKLNVEQEFKGNISGKEEKMDGEMERGYLLDGFGNNEKFFDANSEVDIMGVTQKTEVSKGIVSEDIQELNVTKTNSGSEITSTFLNTDSDVHKVMEKKIGGSPDYKQDDNSDIIEEIVPKMTSKRKKARNIEDAMGIYIKERNHEGEVAVCKYCRKAFSNLRGLYKHEQDHENNTGDDKSKKLPFKCSCCKMRFETRDKVKEHQERVHIDELVCHECGDKIFSNVDSLKSHQQILHKGIPRRGYVYICDKCGKCYKQKALLRTHVNTNCGTISRFQCTVCQKKFSTPHTQKAHMRVHNSEKEMSCRFCKKGFHWKGQLKVHERSHTGEKPYTCLFCPSSFAYRDSLITHSTLHTGVKPYVCKCCGWRFSCVGNFAKHKVTHGSTCGAWYGENVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -