Gqui032666.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000143.1:507131-523640[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.7 5.4e+02 2.4 0.2 1 10 5 14 5 18 0.83 2 19 0.016 1.8 10.2 0.6 6 23 37 54 36 54 0.98 3 19 1.9e-06 0.00022 22.6 1.9 1 23 60 82 60 82 0.98 4 19 0.0006 0.069 14.7 7.1 1 23 109 131 109 131 0.98 5 19 0.16 19 7.0 0.1 1 23 146 169 146 169 0.94 6 19 0.00031 0.035 15.6 4.0 1 23 175 198 175 198 0.96 7 19 7.5e-05 0.0087 17.5 0.2 2 23 204 226 204 226 0.92 8 19 0.00071 0.082 14.4 1.2 2 23 234 255 233 255 0.97 9 19 0.00024 0.028 15.9 0.4 1 23 262 285 262 285 0.97 10 19 1.2e-05 0.0014 20.0 0.6 1 23 291 313 291 313 0.98 11 19 2.1e-06 0.00024 22.4 1.5 1 23 318 341 318 341 0.98 12 19 0.0021 0.25 12.9 1.0 1 20 347 366 347 368 0.94 13 19 0.9 1e+02 4.7 0.1 2 20 403 421 402 423 0.91 14 19 0.42 49 5.7 8.5 1 23 429 451 429 451 0.98 15 19 0.091 10 7.8 1.0 1 21 609 629 609 630 0.95 16 19 0.14 16 7.2 0.6 3 23 638 659 637 659 0.96 17 19 0.01 1.2 10.8 1.5 3 23 665 685 664 685 0.97 18 19 0.0028 0.32 12.6 4.1 1 23 691 714 691 714 0.96 19 19 1.4e-06 0.00016 23.0 1.5 1 23 719 741 719 741 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAGTTATTCGTTTGCAAGATATGCCATATTTCATTGGATAGTGAGAAGATATTGTTACCTCATATGGAACATCAAGCAGAGAaAACTCTACCGATCATTTCCTGCGGCAAAAGATTCAACAAGAATACTATGCTCGTAACGCATTCCAGAATACATACCAAAGAGAAGCCGTACAAGTGCTCCTTTTGTGACAAGACTTTCAGGCAGAAGCCTGCGTTAAATGTGCACCTGAAGTATCATACGGGGAAAATTTTGCACGAGTGCTTAGTTTGCGGAAAAAAGCAAACTATCGAATGCGAGAGCGATTTCAATAAAGTATACCGCTGCGAGCATTGTAATAAAGAATGTCCCACTTGGCACCAATTAAAAACCCACTTCCGCGGCCACGAGACCTCAACCAAACGTCAAATCGCCATCGAACTCGAAGAATTCAGATGCCAATTCTGCGCCAAGCTACTAGGAGACAAAGGAACCCTCGCGAGGCACATCGCCGAGTCCCACAAAAAAGAAACCCGATACGAATGTTACAACTGCGACCAGAAGTTCTACCACAAGTATATGTTGGTAAGGCACATCAAAGAAAAGCATACAGGAGTGCCGCCCACCTGTGACATATGCGGTCTGGAATTCTCCACTTACGCCACTCTGCGCAGACACATCGCCGACAAGCACGAAGTCGATTTCAAAGACCTGTACTGCTATGAATGCAAGAAGTCGTTCGTGGGGGGGATCAGCTACAGGAAGCACATGAGGAAACACACCGATGATGGAGCCAAATACGTCTGCAGCGTTTGCGGCAAGATCCTATCTTCGATGTCCAGCATGAGGGATCACATGACGAGACGTCACAGTGAACAAACGCCCTACGAGTGTGACCAGTGCGAGAAAGCCTTCACAACCCCCTTGTCGCTGAAGACGCATAAGCTCACTCATATCGGCCCTTCCTTCAAGTGCGACCTCTGCCACAAGCAGTTCATCCAACCTGCTTCTCTGAGGATTCACATGAAGAGGGTGCACGTAAAACTAAGGCCGCATCCGTGCGATATATGTGCCAAGTACTTTGCGACCAGGACGGAGTTGAAAAAACACCACGTGAGATGTAAAGGACCGAAACCCGAGAAAGATCCCAAATCTGATTACAAATCTATTTCCAGATACGAAGAACAGGCCGACGAAATAGACATGGAACCCACCAAAATCCAATGCGGAATGTGTGCCGCCGTGTTTCCAAACAAGAAAAAATTCGTGGAACACTCGATGAAACTGATAGGGCAACAATACACTTGCTGCAAATGTCGGGCCAAGTTCAGAACTTGCATGCAACTCTACCAACATTACGACACGCACAAACCTATAGAAAGTACGGATATCGTTATCGAAGACGACGATGGAGACGTGACATTGAACTATACCGACCAGGAAGAAATCATGGTGCAACCGACCATAACCGAAGCTAACGAGTTGTTTTATATCCTAGACGATTCTTCTTGTGTTAACGAAGTCGTGATCGAGGAAGACGAGCCTACTGCTGGCGCTCAACCCAGACCTCGCAAAGAAACGGTCGAGATCGTCAACCTAGAACACGGTTATGTCGTGTCTAATATCGGGGATTACATGGAAGAAGAAGTCGAAGATGACGAGGGGAACATTTTGATTACTAGAAAGCTGGCCGATGCCATCAATCCATCCACTAGTAAAACGGTTATTTCTTCTCCGAGAACAAGGAATCCGCAGCCCAAGAAACGTCATGAAGTCCCCGATTTTTCCGCCACGAACTATATGTACATTGACGCTAATAACGACATTGAAGTTCCTCATTACAAATGTCTGAGGTGTGAGCAACTGTTCATCAATAAGTTCGGTTTCTTCAGACATATCGAGAAAGGAAAGTGCTACATCAATAACTGCGACGTTTGTACAGATACATTTACCAAAAATACAGATTTTTACGATCACTACATAACAGAACATACGGATCGGGCAATATGCAATTTTTGCTTCAGAACGTTCATGTACGAGAAAAATGTTAAAGAACACATGTTGAGGCACTTGGATCAATTCAGGCATCGCTGTGAGGATTGCAACAAGGGATTCTATACCGTCAGGGAGTACAGGAACCATTACAAAAATAGACATATGGGTATCAGGCACAAATGCGAAGTTTGCGGGAGAAGTTTTGCCGACGAGTATTACTTCAAGCGACACATTGCTACCCATGCCAAAGCGGCTAATACCAAGATCGTGTATAAACTTGCGAATTGA
- Protein Sequence
- MEELFVCKICHISLDSEKILLPHMEHQAEKTLPIISCGKRFNKNTMLVTHSRIHTKEKPYKCSFCDKTFRQKPALNVHLKYHTGKILHECLVCGKKQTIECESDFNKVYRCEHCNKECPTWHQLKTHFRGHETSTKRQIAIELEEFRCQFCAKLLGDKGTLARHIAESHKKETRYECYNCDQKFYHKYMLVRHIKEKHTGVPPTCDICGLEFSTYATLRRHIADKHEVDFKDLYCYECKKSFVGGISYRKHMRKHTDDGAKYVCSVCGKILSSMSSMRDHMTRRHSEQTPYECDQCEKAFTTPLSLKTHKLTHIGPSFKCDLCHKQFIQPASLRIHMKRVHVKLRPHPCDICAKYFATRTELKKHHVRCKGPKPEKDPKSDYKSISRYEEQADEIDMEPTKIQCGMCAAVFPNKKKFVEHSMKLIGQQYTCCKCRAKFRTCMQLYQHYDTHKPIESTDIVIEDDDGDVTLNYTDQEEIMVQPTITEANELFYILDDSSCVNEVVIEEDEPTAGAQPRPRKETVEIVNLEHGYVVSNIGDYMEEEVEDDEGNILITRKLADAINPSTSKTVISSPRTRNPQPKKRHEVPDFSATNYMYIDANNDIEVPHYKCLRCEQLFINKFGFFRHIEKGKCYINNCDVCTDTFTKNTDFYDHYITEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEDCNKGFYTVREYRNHYKNRHMGIRHKCEVCGRSFADEYYFKRHIATHAKAANTKIVYKLAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -