Gqui007291.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010002259.1:25311-73027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0041 0.47 12.0 0.6 2 23 179 201 178 201 0.95 2 20 0.01 1.2 10.8 0.8 1 20 316 335 316 337 0.95 3 20 0.032 3.7 9.2 5.4 1 23 366 389 366 389 0.92 4 20 0.021 2.4 9.8 1.8 1 23 422 445 422 445 0.93 5 20 0.00062 0.072 14.6 0.6 2 23 520 541 520 541 0.98 6 20 0.3 34 6.2 0.1 1 23 566 588 566 588 0.86 7 20 0.00011 0.013 17.0 0.7 2 23 592 613 591 613 0.96 8 20 0.27 32 6.3 0.0 3 23 644 664 642 664 0.96 9 20 0.003 0.34 12.5 0.3 2 23 676 698 676 698 0.95 10 20 0.065 7.5 8.3 6.3 2 23 712 733 711 733 0.97 11 20 0.00086 0.099 14.2 8.4 1 21 758 778 758 780 0.95 12 20 0.07 8 8.2 0.2 3 23 797 818 796 818 0.91 13 20 0.00022 0.025 16.1 1.4 1 23 839 861 839 861 0.98 14 20 0.01 1.2 10.8 1.2 3 23 876 897 875 897 0.95 15 20 0.00011 0.013 17.0 0.1 1 23 914 936 914 936 0.94 16 20 7.2 8.3e+02 1.8 0.0 1 23 973 996 973 996 0.92 17 20 0.00017 0.02 16.4 2.2 2 23 1007 1028 1007 1028 0.97 18 20 0.00015 0.017 16.6 0.3 1 23 1079 1102 1079 1102 0.96 19 20 2.4e-05 0.0027 19.1 1.2 1 23 1110 1132 1110 1132 0.98 20 20 0.0029 0.34 12.5 0.1 1 23 1147 1170 1147 1170 0.94
Sequence Information
- Coding Sequence
- ATGTCGGACCCAAGACTTTGCAATTTCCAATCATGTTGCAGGCTATGCCTGACTGAGAGGTTGGACACTTTGAAATCCATTTTCGACGAAACTGTAGAAGATCAGGCGTTATcgctgaaaatttttcaattcgtTGGTGTCGAGataaattCTTCAGACAAACTGTCAACACAGATCTGCCCAGAGTGCATAATTAAAGTAAGCAGTTTCCACAGTTATAAAGAAGAATGCGTTCAAAACCAAATAAAGTTGCAAGAATGGCTGACCAGTTCTCAAACTGTCAATACGAATGGTTTGGCTGATACGAGTTTTCAAATAAAAGAAGAACCTGCCGACGAAACGGATAGTATTCCTGATGGGCCTGAAAGCCGCGTCGAAATGGTCCAAGTGAAAAATGAGCCTATGGATCAGAATGAAGAAACTATGGAAGAAGTATATAATGAATTGCCTCCCCCACTGACGCCTCATCCTCTTGAGGCTGCAAATCATGAACAGTTGCAAAATGGCGATGCTAgTTCTGATATCAATAAACTGCAGTGTGGCGTTTGTGGCAAATTATTCAGTAGTGTtggaaataagaaaaaacatgaaaagaAGATGCATAAACTACAAGTTCAAGAAATTGTTGATACTACAAAAACAGTAAATGGATTGGCAGATCAAGAGGAGACCACCAACTCTCAAGAAAGTCAACCGGACAAAGACTCTTGTGACGGAGCTGATCAACAAAAAATACTGTTTGCAGCCGGACTGAAACTTCTTCAAAAAGACTCCACCCCAATTTCTTGCGAATCTCTTTCTAAAATTGAATTGAGTTATATCGAAAAATGCAAAGCAATGGTGAATATGCATAAGAGCTTGATTTGCGCCTGTCACAATGTACCACATCAGAATCTCAAAGGTTTATTATCACATCTGAGAGCGTTGAGAATTTGGTTCCCAGTATTCACTTGCTATAATTGTATGATAACGTTTACGGACCGGTCTACATTCACAAGGCACATCGTCAGATGCCCCAGTCAGTCATTAGACACAATAACTAAACTTAGTAACTTGCGAAAACGTAGCGAAGTCAAAACGAGGCTCTATCAAAACTTCAAGTGTACAATTTGTAAGTTCATGTTTAGCTTTCACGAAGATTTCTGCAGACACGTCGATGAGGAACATGCCTCTCTTGCATTCCCTTTCCACTGTCAGTGTCGCAGAGTTTTCGATAATATGGAGGATTACAAGGACCATGTATATGTGAGCTGCATGGTGGACTATTATTGCGACATATGTTTCATCACCACCAAAACGCTGGATGATTTCCAGAAGCACGCGTGTGAGGTTCACGACAATTCCGAGGGATTTATTCTGTTGCAAGACGATAATTACAAAATGAGAAAACCAGCGTGGCATACGGCTTCTAGGGAGGAAGTCGATGAGAGTGTTATTTTAACTGGAAAAAGGGAGAGAAGGGCATCTGTTAAAGCTCCTATAATCGAAAATGATCTAGAAGAAGTGCCGCTCAAAGTTATCAATCCTGTTATATTATCTCCGAAGTCTAATAACAGAAAGTGTCCCGTTTGCGCCAAAGAATATTCGTCTTATAAGAATATGATGCGCCattataaagtacatcaaaactCGGAAAAACTGGAACATTTCAAAGAAGAAGAAGGAGACGACGAGGAGGAAGAGGAAGGTTCGTTTTATTCTTGCCCAGATTGCGGGGGCATGTATAACACCGTAGAATGGCAAAATCATCTGTTGGAAAAACACGAATCGAAGAGTTGCGGAGACTGCGGCAAATTCTTCCAATTCCAAAGCGAATTGGAACAACACAGAAGTGTACACTTGAATCTGAAAGTTTACAGGGATTCTAAAACTCAATCGTATAAAAGCACGGTGATCAGCCCTGGATCGGACGAAGAACTGATGCTGGCTTGCGAAGTGTGCGACCTGCTAGTCCCTACCAGAGAAGCGCTCGAAGAACACAAACTGACTCATGGAAACCAATCGACTAACGATGAGAAAATGCGGAAGTGCGTACTTTGTGACAAGGAATTCGCTACCTATTCGGGATTATgggaacacaacaaaaaaatgcatCCGGAGAGGAAAACGCCTGCTAGTAACTCGTACCCGAAACAATGCACTCACTGCGATAAGGTGTGCACTACTGGAGCAGCGTATCACAGACATAAACAGATACACGAGAAAGTGGAGAATAGAACACCGATAGTTAAAGGGAAGAAAAATGATTCTTCGGCCGAGGAGGAATCTTATCATACGTGTAAACGGTGTTTCAAGGTATTTTCGTCCAAgtataatttgaaaaatcacaTGAAATGTCACGGTATAAACAGCAGTCCTCCGATAAAGAAAGTCCTTAGAAAACCAAACTGTAATGTATGTCAACAAGTATTCGACACAATCGAGGAAGTGACGCGACACAAAGAAGAACTACACAACGACACCGAAATGCCGTTGTTGTCCAATCAAACGGAAGGAGAAGAGGTTCCGTTTGTTTTCACATGCGACGTGTGTGTGATGACTTTCTCGACGAAAATGGCCTTGAAAAAACACAAAGAAAAGCACCTTCAAGAATCCAAGTCGGCTAGCCAGAAGCAGTCGGTCTTCTGCAAGTATTGCAAAATTCCCTTCGATTCGATAATTTCGCTGACTAAGCACATGCACTTGGAACACGACGAAGGCGGCAAACCCAAAATCGGCAAGCTGAAAGAGAAAGAAGACTTCGCTTGCAGCATTTGTAAAAAGAGTTTCCAAACAGCAGCTGCTCTAACGACCCACATTGGCTGGCATAAACGTTCCCAAAACGAAATGAATACAAAGTTGATGAGACAGACTAAGGTCGTCAACAAATTAACTCCGAGTGCGCAGATAAAACAAGAACCGGCAGACGAGCCAAAGTTCCAGTGCGCCACGTGCTTGGCGGAGCTACCCAACGATACCGCTTTGCAGGTTCACATTCTGGAGAAACACAGGAGCGTAAGCGCTATCATGCTTATTCCTCGTTGCAACACTTGCAATAAGGATTTCACCACTCAGGATGAGTATGAGACCCACAAGCGTCTGCACGACTTCCTCGAGAGGCAGAAACAGCACGAACAAAATATGCTGCTTCAACAGCAAGCTCAGGCGGTTCCTACTAAGAAGGCGGAACAACAAAACCCGTTACCGACCAAAGCGCCGATTATTCCGGGAAGTCCGCCGAAGATCGCCAAGAATTTTCCGTGCAAGTACTGCAATGCTGGGTTTAGCAGGTCTGATACGCTAGGAGCGCACGTTCGACAATACCACAAGGAGTTTGTTCAGACTGAATTCAAATGCACCCAATGCGACAGGATATTCGACAAGCAAAATTCCCTAACGATTCATCTGAAAGTACATGAGAAACAGAAGGTTGTGGTTAGTCCTGCGAGTAAGCCCTTGTTTTCGTGTTCTATTTGTAACATGGGCTTCGATTTACCAAAGGATCTTAGGGCGCATACTATTAATGCTCACCCGTTTTGA
- Protein Sequence
- MSDPRLCNFQSCCRLCLTERLDTLKSIFDETVEDQALSLKIFQFVGVEINSSDKLSTQICPECIIKVSSFHSYKEECVQNQIKLQEWLTSSQTVNTNGLADTSFQIKEEPADETDSIPDGPESRVEMVQVKNEPMDQNEETMEEVYNELPPPLTPHPLEAANHEQLQNGDASSDINKLQCGVCGKLFSSVGNKKKHEKKMHKLQVQEIVDTTKTVNGLADQEETTNSQESQPDKDSCDGADQQKILFAAGLKLLQKDSTPISCESLSKIELSYIEKCKAMVNMHKSLICACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHIVRCPSQSLDTITKLSNLRKRSEVKTRLYQNFKCTICKFMFSFHEDFCRHVDEEHASLAFPFHCQCRRVFDNMEDYKDHVYVSCMVDYYCDICFITTKTLDDFQKHACEVHDNSEGFILLQDDNYKMRKPAWHTASREEVDESVILTGKRERRASVKAPIIENDLEEVPLKVINPVILSPKSNNRKCPVCAKEYSSYKNMMRHYKVHQNSEKLEHFKEEEGDDEEEEEGSFYSCPDCGGMYNTVEWQNHLLEKHESKSCGDCGKFFQFQSELEQHRSVHLNLKVYRDSKTQSYKSTVISPGSDEELMLACEVCDLLVPTREALEEHKLTHGNQSTNDEKMRKCVLCDKEFATYSGLWEHNKKMHPERKTPASNSYPKQCTHCDKVCTTGAAYHRHKQIHEKVENRTPIVKGKKNDSSAEEESYHTCKRCFKVFSSKYNLKNHMKCHGINSSPPIKKVLRKPNCNVCQQVFDTIEEVTRHKEELHNDTEMPLLSNQTEGEEVPFVFTCDVCVMTFSTKMALKKHKEKHLQESKSASQKQSVFCKYCKIPFDSIISLTKHMHLEHDEGGKPKIGKLKEKEDFACSICKKSFQTAAALTTHIGWHKRSQNEMNTKLMRQTKVVNKLTPSAQIKQEPADEPKFQCATCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFTTQDEYETHKRLHDFLERQKQHEQNMLLQQQAQAVPTKKAEQQNPLPTKAPIIPGSPPKIAKNFPCKYCNAGFSRSDTLGAHVRQYHKEFVQTEFKCTQCDRIFDKQNSLTIHLKVHEKQKVVVSPASKPLFSCSICNMGFDLPKDLRAHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -