Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010001070.1:91285-205001[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00011 0.013 17.0 3.2 2 23 202 223 201 223 0.98

2 11 2.1e-06 0.00024 22.4 1.4 1 23 229 251 229 251 0.99

3 11 7.6e-05 0.0088 17.5 4.2 1 23 259 281 259 281 0.97

4 11 0.0017 0.2 13.3 3.4 1 23 287 309 287 309 0.98

5 11 0.0003 0.035 15.6 1.0 1 23 321 343 321 343 0.96

6 11 6.6e-08 7.6e-06 27.1 2.0 1 23 349 371 349 371 0.98

7 11 1.1e-05 0.0013 20.1 0.5 1 23 377 399 377 399 0.99

8 11 1.5e-06 0.00017 22.8 0.8 1 23 405 427 405 427 0.97

9 11 6e-05 0.0069 17.8 1.5 2 23 434 455 433 455 0.97

10 11 4e-05 0.0046 18.4 0.1 1 23 461 483 461 483 0.99

11 11 6.3e-08 7.2e-06 27.2 0.5 1 23 489 511 489 511 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00011	0.013	17.0	3.2	2	23	202	223	201	223	0.98
2	11	2.1e-06	0.00024	22.4	1.4	1	23	229	251	229	251	0.99
3	11	7.6e-05	0.0088	17.5	4.2	1	23	259	281	259	281	0.97
4	11	0.0017	0.2	13.3	3.4	1	23	287	309	287	309	0.98
5	11	0.0003	0.035	15.6	1.0	1	23	321	343	321	343	0.96
6	11	6.6e-08	7.6e-06	27.1	2.0	1	23	349	371	349	371	0.98
7	11	1.1e-05	0.0013	20.1	0.5	1	23	377	399	377	399	0.99
8	11	1.5e-06	0.00017	22.8	0.8	1	23	405	427	405	427	0.97
9	11	6e-05	0.0069	17.8	1.5	2	23	434	455	433	455	0.97
10	11	4e-05	0.0046	18.4	0.1	1	23	461	483	461	483	0.99
11	11	6.3e-08	7.2e-06	27.2	0.5	1	23	489	511	489	511	0.98

Sequence Information

Coding Sequence: ATGGAAGTTAAAGTTCATACAGGGGGTCTTTTCGAcattaataaaatttgtaggtCCTGTTTGACCGAAAAAGGAGAAATGAGATCGGTCTTTATGCAAGATGAAACAACAGGACAAGCAGTGATTCTGGCAGAAATGTTAATGGGATTTTCTTCAGTGCAGATTGCAAATGGAGATGGTCTACCATGTCTAATTTGCTTACAGTGTGTTCACCAGATCAGTAGGTGTTATTCTTTCAAACAATTATGTGAGCAATCAGACCTCAATCTTCGTCAGTACCTTGGAAAACCGTCTATCCCCAAACCATGCAAAGAAGAAGAAATTCTTCAAACTAATGACTTTACCAATAGTCTGTTATTGGAAAACTTTGGATTAGATTCATCATCTGGAGATAGTGATGAGGAAGATTTTAAAGATGACTTCAATTTGTTGCAAACATCTTTGATAGATAATGCAGAGGATGAAaaattaattgctcaaaagcaacTTATTAAAGCTGCTAAGCTTCAGAAAAGTAGAATGTCTAGAAGAAAATTACTGGCTAAGAGTGGAAAATCTGGAGTTTCAGCTCTGACAGGACGAAAAATGAAACGTAACATCAATCAGTGTAATGTGTGCAAAAAACAATTCATCAATATGAAATCATTCAAGAAGCACCTGAGAATGCACATTGAAGACCGTCCTTTCAAGTGTAAAATGTGTCCTCGGGGATTCACCGAAGAGAATTACTTGAATAATCACATGAGGACACATGTTCCAGATGAGCAAAAACCCCATGAATGTGAGATTTGCAAAAAAAGATTTATACATATAACACTGCTAAATAAACACATGTTGAAGCACAGTGGCGAAAAACCTTTTGTATGTAAAATATGCCATAAGGGATGCTATGCTGAAAACAGTTTGCTGAAACATATGAAAATCCACGAGAAAAAGGAAGGTGACCCTGGACTGCTGAAACACATATGCGATTATTGTAAGACAGAATTTCCAGACTCCCAAAGTTTATCAATCCATATCAAACAACATACTGGCGATAGACCTTTCGTATGTAATATTTGTGGTAAATGCTTCCCGCAGAGGTTCAACCTTGAATTGCATTTACGAACACACACAGGTGAGAGGCCATTTCAATGTGAAGTTTGCAAAAATGGCTATGTGTCTAAGGCTAGTCTTAAAATACATATGAGAACCCATACAAATGAGCGTCCTTTTGCTTGCAATTTCTGTGGAAAAGCTTTCCGCCAGTCTGGAGATCTCACAAGCCATAAACGTCTTCATGGAACTGAAAAACCTATAGAGTGTTCAGTTTGTCAAAAGAGattcACCACGGTAATGAAGCTAAAGTATCATATGAGAAACCATACTGGGGAACGCCCATATGTTTGTAGTGTTTGTGGCAGGGGTTTCACGGTCAACACCATTTTACTCAGACATATGCGGGTTCATTCTGGAGAAAGACCATATGTATGTGTGACATGCGGGAAAGCATTTTCCCAATCAAGTACGCTCAATACACATATGAAAGTCCATGCTCCCTCCCCTAAATATACTCAGGAACAACAACTGCCCAAATTCCAAGAAACCAACGAACCAAAATACCCAGCTCAACAGCAATCACAACAGCAGCCACGACAAACGCAAGATCATACGAATCGCCTCATGCAGACGGATAATAGAATGCTTCAAAATGAACCTATTCAAAGAATGTTACAGCATGACAATACACGTATGCTCAACAATGATGGCAGCAGGATAATCACGGATACTTCACATTTGCTCACTGATAGAGGAATGACAGACAATACGAGGTTGTTGCCAAACGACGGTACAAGATTACTGATTAATATTACTGAACCCCCACCACTAAGACTATTAGTGAATGAAAATACAAGGTTGATCACTAATGACAACAGACTGATTACACAAGATAATAGATTGATAGCTAATGTGAATATAAATGATGGTTCTAGGATTATGAATGACAAATATCTGACAAACTATGATCCATATCATCGAGGTCACTTGTAA
Protein Sequence: MEVKVHTGGLFDINKICRSCLTEKGEMRSVFMQDETTGQAVILAEMLMGFSSVQIANGDGLPCLICLQCVHQISRCYSFKQLCEQSDLNLRQYLGKPSIPKPCKEEEILQTNDFTNSLLLENFGLDSSSGDSDEEDFKDDFNLLQTSLIDNAEDEKLIAQKQLIKAAKLQKSRMSRRKLLAKSGKSGVSALTGRKMKRNINQCNVCKKQFINMKSFKKHLRMHIEDRPFKCKMCPRGFTEENYLNNHMRTHVPDEQKPHECEICKKRFIHITLLNKHMLKHSGEKPFVCKICHKGCYAENSLLKHMKIHEKKEGDPGLLKHICDYCKTEFPDSQSLSIHIKQHTGDRPFVCNICGKCFPQRFNLELHLRTHTGERPFQCEVCKNGYVSKASLKIHMRTHTNERPFACNFCGKAFRQSGDLTSHKRLHGTEKPIECSVCQKRFTTVMKLKYHMRNHTGERPYVCSVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHAPSPKYTQEQQLPKFQETNEPKYPAQQQSQQQPRQTQDHTNRLMQTDNRMLQNEPIQRMLQHDNTRMLNNDGSRIITDTSHLLTDRGMTDNTRLLPNDGTRLLINITEPPPLRLLVNENTRLITNDNRLITQDNRLIANVNINDGSRIMNDKYLTNYDPYHRGHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -