Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010000786.1:143852-186065[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00022 0.026 16.0 0.3 1 23 182 204 182 204 0.99

2 12 0.00087 0.1 14.2 1.9 1 23 210 232 210 232 0.96

3 12 1.6e-05 0.0019 19.6 4.8 1 23 249 272 249 272 0.96

4 12 1.1e-06 0.00013 23.3 0.7 3 23 288 308 286 308 0.98

5 12 3e-05 0.0035 18.7 0.7 2 23 315 336 314 336 0.96

6 12 1.9e-07 2.2e-05 25.7 3.5 1 23 342 364 342 364 0.99

7 12 1.4e-07 1.7e-05 26.1 2.2 1 23 370 392 370 392 0.98

8 12 5.8e-05 0.0066 17.9 2.8 1 23 398 420 398 420 0.98

9 12 0.00017 0.02 16.4 1.2 1 23 426 448 426 448 0.97

10 12 1.1e-05 0.0013 20.1 1.4 1 23 454 476 454 476 0.98

11 12 0.00031 0.035 15.6 0.9 1 23 482 504 482 504 0.98

12 12 2e-06 0.00023 22.5 1.6 1 23 510 533 510 533 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00022	0.026	16.0	0.3	1	23	182	204	182	204	0.99
2	12	0.00087	0.1	14.2	1.9	1	23	210	232	210	232	0.96
3	12	1.6e-05	0.0019	19.6	4.8	1	23	249	272	249	272	0.96
4	12	1.1e-06	0.00013	23.3	0.7	3	23	288	308	286	308	0.98
5	12	3e-05	0.0035	18.7	0.7	2	23	315	336	314	336	0.96
6	12	1.9e-07	2.2e-05	25.7	3.5	1	23	342	364	342	364	0.99
7	12	1.4e-07	1.7e-05	26.1	2.2	1	23	370	392	370	392	0.98
8	12	5.8e-05	0.0066	17.9	2.8	1	23	398	420	398	420	0.98
9	12	0.00017	0.02	16.4	1.2	1	23	426	448	426	448	0.97
10	12	1.1e-05	0.0013	20.1	1.4	1	23	454	476	454	476	0.98
11	12	0.00031	0.035	15.6	0.9	1	23	482	504	482	504	0.98
12	12	2e-06	0.00023	22.5	1.6	1	23	510	533	510	533	0.97

Sequence Information

Coding Sequence: ATGAAATTGGACAAGATATGTCGTACCTGCCttgtagaaaaaacgaatctgaGACCATTATTTGAGGCTTGTATTGCAAACATGTTGATGTCTTGTGCTTCCCTACagGTGATACAAGGAGATGGCTTACCAAACCAAATCTGTACCCAATGTCTCCAAAGTGTTAATAAAGCATATACATTCAAACAACTCTGCGAAAAGTCCGACATCACAATTAGAAActatttaaatattaatttacagTCTATTTCAATTCCAACAGATAACATAATGAATGAAGTGAAAACTGACTTATTCGGGAACAGCGAAGTACTCCAGCAGAGTTCCCTATTTCAGGATATTTTCAATGATGCCACTACTCATTCTTTAGTTGAAACTTTTACAAATCAAAATGCTAGTACGGTAGTTTCAGATTTGGCCGAAACAATGCAAAGTCTCCAGACGATTGCAGAACAATGTTTACCTGAATcttgggaaagtgatggcaatatAGTACCTTGTCATTCGGATGAAGCCACTGATCACTTCACTTTGGGGTCAATATACAAATGTGAATTTTGTGAAAGTATATTCAAAGATGAATGGTCCCTTGCAGAACACATGAAAAGCCACACAGGCCGACCCAAGTACTTTTGTAATATTTGCAGAAAAGTATGTAACAGTTCGAATGACTTAGACAAGCATCTCATTGAACACACATTTGTTGGAAGCAAAAGTGACCTGGCTGAAACAGGCAAAGTAGATTTCACATGTAatTTCTGTGATAGACATTTTAGCGATTCGAAATATCTGAAGAGGCACCTCAAAGAACTACATTTTATTGATACTGATCCAATCTtggaaccagaaaaaaaatttggttgTAATATTTGCGGAAAAAGTTATAGACAAAACAAACTCTTAGTAATGCATATGAGAAGCCATACTGGGGAGAGACCTCTTAATTGTGAGATATGTGGAAGGAACTTTGCTTTACCCTCATCCCTGCATAAACATAGAAATATTCACATTGCTGAGAAGAAGTACGAATGCAATATTTGCCATAGAAAATTCAATCAATCTTCTAATTTGAATGAACATCTCAAGACCCACACAGGTCAAAAATCTCATACATGCAGTGTTTGTGGAAAGAACTTTTCAACAAATACAAATCTCTATATCCATATGCGAATTCACACTGGTGTCAAGCCATATAGCTGCAATTTTTGTCAGATGTCATTCAATACAAGTACCCAAATGAAGAAACATCAATTGATTCATACCGGGGAAAAACCTTATCCTTGTTGGCAATGTGGAAGATCATTTCGTAGAAAAGAAACAAGAGATACCCACGTGAGATATCACACAGGGGAGAGACCATATTCGTGTGAAAtatgttccaagaaatatgtggCGGCAAGCCATTTGAGGGACCACATGAAGTCGCACAACAATAATAGAAAGTTTGAGTGTATGATTTGTGAAAAGAAGTTCTTGGATTCCAAAACGCTGAAAAGTCATATTTTGACACACACTGGACAGAAGCCCTACTCCTGCCAATTTTGTGGGAAAAATTTTACTCAAAATGGTAGTCTTGTAACACAcatgaaaaattatcataattcataa
Protein Sequence: MKLDKICRTCLVEKTNLRPLFEACIANMLMSCASLQVIQGDGLPNQICTQCLQSVNKAYTFKQLCEKSDITIRNYLNINLQSISIPTDNIMNEVKTDLFGNSEVLQQSSLFQDIFNDATTHSLVETFTNQNASTVVSDLAETMQSLQTIAEQCLPESWESDGNIVPCHSDEATDHFTLGSIYKCEFCESIFKDEWSLAEHMKSHTGRPKYFCNICRKVCNSSNDLDKHLIEHTFVGSKSDLAETGKVDFTCNFCDRHFSDSKYLKRHLKELHFIDTDPILEPEKKFGCNICGKSYRQNKLLVMHMRSHTGERPLNCEICGRNFALPSSLHKHRNIHIAEKKYECNICHRKFNQSSNLNEHLKTHTGQKSHTCSVCGKNFSTNTNLYIHMRIHTGVKPYSCNFCQMSFNTSTQMKKHQLIHTGEKPYPCWQCGRSFRRKETRDTHVRYHTGERPYSCEICSKKYVAASHLRDHMKSHNNNRKFECMICEKKFLDSKTLKSHILTHTGQKPYSCQFCGKNFTQNGSLVTHMKNYHNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00329865;
90% Identity: -
80% Identity: -