Gqui005024.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000317.1:144421-187480[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.042 4.8 8.9 0.3 3 23 328 348 327 348 0.92 2 19 0.11 12 7.6 3.2 1 23 414 436 414 436 0.98 3 19 0.0025 0.29 12.7 4.2 1 23 441 463 441 463 0.98 4 19 0.0079 0.91 11.2 7.0 1 23 469 491 469 491 0.95 5 19 4.2e-06 0.00049 21.4 2.4 1 23 497 519 497 519 0.98 6 19 0.00022 0.025 16.0 0.1 1 23 525 548 525 548 0.97 7 19 2.2e-07 2.5e-05 25.5 2.9 1 23 582 604 582 604 0.98 8 19 1.1 1.3e+02 4.4 0.5 2 23 612 630 612 630 0.80 9 19 2.9e-05 0.0034 18.8 0.9 1 23 637 659 637 659 0.98 10 19 0.027 3.1 9.5 4.7 1 21 665 685 665 687 0.95 11 19 5.2e-05 0.0059 18.0 2.9 1 23 694 717 694 717 0.97 12 19 0.0007 0.08 14.5 3.4 1 23 723 745 723 745 0.98 13 19 2.6e-05 0.003 19.0 2.4 1 23 751 773 751 773 0.98 14 19 0.00063 0.072 14.6 2.1 1 23 779 801 779 801 0.98 15 19 2e-05 0.0023 19.3 2.1 1 23 807 829 807 829 0.97 16 19 3.3e-05 0.0038 18.7 0.9 1 23 835 857 835 857 0.98 17 19 2.3e-05 0.0027 19.1 4.3 1 23 863 885 863 885 0.99 18 19 0.0017 0.19 13.3 6.7 1 23 891 914 891 914 0.97 19 19 8.5e-05 0.0098 17.3 0.9 1 23 919 943 919 943 0.92
Sequence Information
- Coding Sequence
- ATGGAAGAACATCCGTTGCTTGTTAATTTTCCATTCATTTGTAGAATCTGCTTGACTGGTAATGATTTGAAACCTTTTGCTGGAGAAAAATGCCAACAAATACTTTTTAGGAACATTACTAATATTCAGGTGGAAAACCAAGATAGTCTTCCAAAAAATGTATGCCAGAATTGTTTGATCAAACTGCAAGACATATCactattcattgatttatctaaGTATAATAACATAAGCTTCCATCAAGATTTAATAAAAGAGAAAGAAGAACTGCATACATCCAAAAAAGATGAAATAACAATAATAGATGATGGTACAACAATTAAAATTGAAGATTGTGGTGAGAATGGTATCCTCGCAAATTATAgtgctgaaaaacaaaaaaatggacAGAGATACGAAGTGAGAAATGGCAAGAAATCTGATGAAAGAACATAcacaaattattttccacttgttTGCCGAATTTGCTTAGCAAAAAATAATCTGAAGGTTTTTGATGGACATGAAAATCTCATTAATGTATTCAGGAATATCACTAATATAGGGGTTTCAACTCAAGATGAACTTCCAAAGAATATCTGCTCTGTATGTATCGAGAAGCTCCAGGGAATTTCAGCCTTCATTGAATTGTCAAAGTTCAACAATGCCAAACTCCAGCAGATTTTTTCAACGCAACAAGATGACATTCCTCTAGAACGATCAGATGGAACTGCAGAAGTCGGTGGAATCAATACTGAGGAAGACCTTACTATCACTTGTAGAACTCTTGGATGCCTTAAAGAAATAACGAACAACGGGGATACCTTCACTACAGAAAGGGATCGGACCAATCAGAAACATGGACATACTTCTGATAAGATATATATAACAGATAATAATGAACTGGCTTTGCGGAAACGTGGGAAGTGTAACAAAGATTTCCCTACATCACTATCAGAGGACAAACACATGGAGTCCCATTTTGGAAATGATTTTCTACTCTGTTTCATTTGTGGAAGAGCATTCATCAAAAAAGAAGAGTATCTATTGCACAGCACATTACATTcagtcaaagaaaaaaaaaattcggacaAACCATCCGGAAATAATAGGAATAATAAATCTAAagaaatccagaaaaatatttctgatggaatatcaaataataattcacatttatctaatgaaaaaaaaacagcagaaaaGAAAAAACCTCGAAAGATTTTGGCAATTGCGATTAGAGGATTACGTCAAAGGTCATTTCAATGTAAAGTATGTCTAAAATATTACTTGAAGGAAATTCATTTGAGACAACATATGAAGGTTCATTCAGAACCCTCATTCCATTGTGAAGTTTGTTTGGGGAAATTCACATACAAACATAATTTAATAACACACATGAAGGTTCATTCGGACGAACGTCCATTCTGCTGTAAAATCTGTAGCAAAGCTTTCAAATTCAGGCATACCTTGGTAAAACATTTGTTCCTGCATACAGGCAAGAAACCATTCGAATGTCACAACTGCCAGAAAAAGTTTGCTGAGAAGAGAAACTTGGAAGTTCATATGAAAATACATACTGGTGAGCGCCCTTATAAGTGTTCGATATGCTTAAAAGCATTTGCTCAAAAAGGATATGTGAAAATACACATTGACATGATCCATTTAAAAAAGAGGAATTTCCAGTGTTTCCTTTGCTTGAAGTATCACATGACCAGACAGTGCCTCTCCAAGCACTTGGAAACCCATAAAGACGAAAAAGCATTCAAGTGCACCATTTGTTCTAAAACTTTCAAACAACGAGACAATCTGAGGAAGCACCTAGTAACCCATGATGAAGCTGGCAAACGTGCTCAGTGTGAAGTGTGTTCCAAAATGGTTGTAGATCTCTCTACTCATATGAAGACTCACACCGAGAGGGTGAGATCTTTCAAGTGTGTCGAGTGCGGGAAAGGTTGCTACACCAAAGGAGACTTGATAAAGCACCTGTCAATTCATAGGACTGAGCGATCTTTCAAATGCTTTCTTTGCTCGAAGGATTTCCGTTCCAAAATACTCTTGGGAAAACATATGAAGTGTCATATGAAAATAGAAAAGCCACACCAATGTAACATTTGTtccaaacaatttatttttccaagcCAGTTGAAATATCACCAGCAGAAGGTCCATAAGGGGGAAAAACGTTTCGAATGCCAGTTTTGTTCGAAGCGTTTCTTTTATAAGTCTCAAATGCTTTTACACCAACGAGTACATACAGCTGAGAAACCTTATCCATGTGATCAGTGCACCAAAAGGTTTTCCCATAAGACATCTCTAGACGACCATTTGAGAGTACATTCGGGTGAGAAGCCATTTAAGTGTGAGGAATGTCCTGCATGGTTCAGAAAACAGTCCCACTTGAAAACCCACTCAAGAGTCCACACGGGAGAGAAGCCTTACGAGTGTGAGATTTGTTCTAAGAAATTTACCCAAAAAAACGATATGAAAAAGCATCGGCTCCTCCATTCAGGCAAGAAAAACTTCAAGTGCACTGTATGTTCGAAAGTATTTGCTGAGAAGTACACCTTGATCACTCACTCTAGAATACATACTGGAGAAAAACCATATACATGCTCTATATGCTCAACTAGCTTTTCACATCTTCGCACTTTGAAAAGACACTTGAGCACACACACTGGCCAAAAACCTTATAGTTGCCATGTATGTTCAAAAAGCTTCGCACATAAATCATATATTTCCCAACACTATAAAAAAACGCATATAGAAACATCCTTCAGTTGTAGCATTTGTTCGAAAAGTTTTCCCAAAGAAGGCCATTTGAAAATGCACGAACGAATGGCTGAACATAAAGGGGTGAAACGAAAATGA
- Protein Sequence
- MEEHPLLVNFPFICRICLTGNDLKPFAGEKCQQILFRNITNIQVENQDSLPKNVCQNCLIKLQDISLFIDLSKYNNISFHQDLIKEKEELHTSKKDEITIIDDGTTIKIEDCGENGILANYSAEKQKNGQRYEVRNGKKSDERTYTNYFPLVCRICLAKNNLKVFDGHENLINVFRNITNIGVSTQDELPKNICSVCIEKLQGISAFIELSKFNNAKLQQIFSTQQDDIPLERSDGTAEVGGINTEEDLTITCRTLGCLKEITNNGDTFTTERDRTNQKHGHTSDKIYITDNNELALRKRGKCNKDFPTSLSEDKHMESHFGNDFLLCFICGRAFIKKEEYLLHSTLHSVKEKKNSDKPSGNNRNNKSKEIQKNISDGISNNNSHLSNEKKTAEKKKPRKILAIAIRGLRQRSFQCKVCLKYYLKEIHLRQHMKVHSEPSFHCEVCLGKFTYKHNLITHMKVHSDERPFCCKICSKAFKFRHTLVKHLFLHTGKKPFECHNCQKKFAEKRNLEVHMKIHTGERPYKCSICLKAFAQKGYVKIHIDMIHLKKRNFQCFLCLKYHMTRQCLSKHLETHKDEKAFKCTICSKTFKQRDNLRKHLVTHDEAGKRAQCEVCSKMVVDLSTHMKTHTERVRSFKCVECGKGCYTKGDLIKHLSIHRTERSFKCFLCSKDFRSKILLGKHMKCHMKIEKPHQCNICSKQFIFPSQLKYHQQKVHKGEKRFECQFCSKRFFYKSQMLLHQRVHTAEKPYPCDQCTKRFSHKTSLDDHLRVHSGEKPFKCEECPAWFRKQSHLKTHSRVHTGEKPYECEICSKKFTQKNDMKKHRLLHSGKKNFKCTVCSKVFAEKYTLITHSRIHTGEKPYTCSICSTSFSHLRTLKRHLSTHTGQKPYSCHVCSKSFAHKSYISQHYKKTHIETSFSCSICSKSFPKEGHLKMHERMAEHKGVKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -