Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010002448.1:149735-170476[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0025 0.29 12.7 0.5 2 21 121 140 120 141 0.94

2 12 8.5e-06 0.00097 20.5 2.6 1 23 149 171 149 171 0.99

3 12 4.1e-08 4.8e-06 27.8 1.2 1 23 177 199 177 199 0.98

4 12 2.5e-06 0.00028 22.2 3.5 1 23 205 227 205 227 0.99

5 12 0.00047 0.054 15.0 3.8 1 23 233 255 233 255 0.98

6 12 0.0031 0.35 12.4 0.2 2 23 266 287 265 287 0.97

7 12 1.5e-06 0.00018 22.8 1.1 1 23 295 317 295 317 0.98

8 12 4.4e-07 5.1e-05 24.5 3.2 1 23 323 345 323 345 0.98

9 12 1.2e-07 1.3e-05 26.4 1.3 1 23 351 373 351 373 0.98

10 12 8.1e-06 0.00093 20.6 2.3 1 23 379 401 379 401 0.99

11 12 8.2e-06 0.00095 20.5 0.8 1 23 407 429 407 429 0.98

12 12 0.0022 0.26 12.9 3.7 1 23 435 458 435 458 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0025	0.29	12.7	0.5	2	21	121	140	120	141	0.94
2	12	8.5e-06	0.00097	20.5	2.6	1	23	149	171	149	171	0.99
3	12	4.1e-08	4.8e-06	27.8	1.2	1	23	177	199	177	199	0.98
4	12	2.5e-06	0.00028	22.2	3.5	1	23	205	227	205	227	0.99
5	12	0.00047	0.054	15.0	3.8	1	23	233	255	233	255	0.98
6	12	0.0031	0.35	12.4	0.2	2	23	266	287	265	287	0.97
7	12	1.5e-06	0.00018	22.8	1.1	1	23	295	317	295	317	0.98
8	12	4.4e-07	5.1e-05	24.5	3.2	1	23	323	345	323	345	0.98
9	12	1.2e-07	1.3e-05	26.4	1.3	1	23	351	373	351	373	0.98
10	12	8.1e-06	0.00093	20.6	2.3	1	23	379	401	379	401	0.99
11	12	8.2e-06	0.00095	20.5	0.8	1	23	407	429	407	429	0.98
12	12	0.0022	0.26	12.9	3.7	1	23	435	458	435	458	0.97

Sequence Information

Coding Sequence: ATGACTGCAATGGCTTCAGATCCGATCGAGGTTCTAATAAAAGAAGAACCACAAGATCCGGACCTACTAGCCCAAAACATCCCTACAGTCATCAAACAGGAAAATGACCTGGACTTCCTATTGGACAAACCAGACTTGATTAATGTCGAAAATACTCCAGTCATTGATGAACCCAATACATGGGTTGAGGCCTCGGTCGAGGCAGATAACGAGCCCAGCGAAGATGCCTCCGACAAAGACTACGACCCTCCAACAATGGACGAACCATCTCACAAAATCACTCTGGAGTCGCTCCAGTATAGTTCTAGTCAAGGAGACGAATCGAGCAGTAGTTCCGGAGACGAAAGCGATTCGGACTTGAAGTGTAAAATTTGTAAAGAAGAATTCGACGACGACTACTACCTGCAGCAACACTACAAGAGCAGGAGGCTGGCGGAGAAGAGCTACAAATGCTGCGGCTGCGGAAAACTTTTCAGGGATAACACCCAACTCAATGTGCACGCTAGAAAACATACGGGAGAGCAACCGTACTCCTGTAAGACCTGCGGGAAAAGGTTTTCGGTCAATGGGAACCTGAGCAAGCATATGAGAATCCATACGGGGGAGAGGAGGTTCACTTGCGATACTTGTGATAGGAAGTTTACTCAGTTTGCGCATTTGGAAGATCACATGAAAACTCATTCGGGGGAAAGGCCTTTCGTTTGCGACTTCTGCAACAGTTCATTCAAAACCAAGGCTAGACTGAAAAAACACAAGAAATCCCATGACGATACCACGGATAACAGAAGGGCAATACCTTGTCCCATTTGCTCTAGGGTTATGAAAAGTACAAAACAGCTAATGACACACCTAGAAACCCACGACGAAGGGCCCCACAATCCGTTTTCTTGTGACTATTGTGGAAAAAGCTACAAGAATTTGTTTTCATTAAACATTCATATCAAACTGCATGGCAACGTCCGAGACTTCAAATGTAGTTTGTGTGACAAGGCTTTTACCAATGCCAGTCATTTGAGGAGGCATTCCAATTCTCACTCAGGGGTGAGGCCTTTTGTTTGCAACATATGTCATAGGGGTTTTCCGTCTGCGCAAAACCTCAAAAGGCACATGATGACTCACACTGGCGAAAAACCCTATACTTGCACAGACTGCAGCAGAAGTTTCCTGACTCTGGAGAATCTCAATCGGCACAGGAGGACGCATACCGGAGAAAAACCTTTTCCTTGTGAGGTTTGTGGGAAATTTTTCGCACACAGtaCGACAGCCAAAGAACACATGAGAGTACACACGGGTGACAAACCATTCCAATgcgaattttgtgataaaaaattcTCGCTCAGTAAGACCCGTTACAAGCACATTCGGGAGAAACATCCGGCGTTCTTTCCAGAATTCAAGAGACTCAACGACATGCCCCCGAATATGAAGAGGGCGcgcgaaaaaataaaaaaggaggtCGTTCTGCCCGACGAACCGtatgtcaaaaaaataattatgaattattCGAATCATCTCAAGGGGATTGCCCAGAATGGTGCGAGAGTGGGAGGAAAAGAAGATGGCATGGTTGGTCCCGTGGTACAAAAATGCGAGGATGTCGAAGACATCAAAGTTAATATGGACACTGTTGAGAATAGCTTAGATAATAGTAGGACTGAAGAAGTGAGGGTAAAAGAAGAACCCATGGCGGTtttcattaaaacagaaagtgaTGATTTTGATTGTAGTTAA
Protein Sequence: MTAMASDPIEVLIKEEPQDPDLLAQNIPTVIKQENDLDFLLDKPDLINVENTPVIDEPNTWVEASVEADNEPSEDASDKDYDPPTMDEPSHKITLESLQYSSSQGDESSSSSGDESDSDLKCKICKEEFDDDYYLQQHYKSRRLAEKSYKCCGCGKLFRDNTQLNVHARKHTGEQPYSCKTCGKRFSVNGNLSKHMRIHTGERRFTCDTCDRKFTQFAHLEDHMKTHSGERPFVCDFCNSSFKTKARLKKHKKSHDDTTDNRRAIPCPICSRVMKSTKQLMTHLETHDEGPHNPFSCDYCGKSYKNLFSLNIHIKLHGNVRDFKCSLCDKAFTNASHLRRHSNSHSGVRPFVCNICHRGFPSAQNLKRHMMTHTGEKPYTCTDCSRSFLTLENLNRHRRTHTGEKPFPCEVCGKFFAHSTTAKEHMRVHTGDKPFQCEFCDKKFSLSKTRYKHIREKHPAFFPEFKRLNDMPPNMKRAREKIKKEVVLPDEPYVKKIIMNYSNHLKGIAQNGARVGGKEDGMVGPVVQKCEDVEDIKVNMDTVENSLDNSRTEEVRVKEEPMAVFIKTESDDFDCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -